View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11855_high_23 (Length: 310)

Name: NF11855_high_23
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11855_high_23
NF11855_high_23
[»] chr1 (20 HSPs)
chr1 (1-294)||(27442322-27442613)
chr1 (94-294)||(32715690-32715890)
chr1 (94-267)||(17971338-17971513)
chr1 (102-294)||(28723914-28724106)
chr1 (105-294)||(13603078-13603270)
chr1 (202-294)||(45691551-45691643)
chr1 (97-293)||(28165076-28165273)
chr1 (94-248)||(31152432-31152585)
chr1 (94-288)||(36437155-36437350)
chr1 (94-248)||(3574723-3574880)
chr1 (94-293)||(42745541-42745740)
chr1 (101-238)||(39150187-39150324)
chr1 (94-248)||(9851809-9851963)
chr1 (97-222)||(11435553-11435678)
chr1 (92-170)||(17988358-17988436)
chr1 (95-249)||(46443700-46443853)
chr1 (98-248)||(31181047-31181199)
chr1 (93-227)||(28469930-28470064)
chr1 (94-148)||(31003677-31003731)
chr1 (193-248)||(32800405-32800462)
[»] chr4 (14 HSPs)
chr4 (98-288)||(25376800-25376991)
chr4 (94-192)||(54863921-54864020)
chr4 (97-238)||(18838752-18838893)
chr4 (114-293)||(31707303-31707480)
chr4 (98-246)||(42312399-42312556)
chr4 (142-288)||(25382395-25382541)
chr4 (98-172)||(21128097-21128171)
chr4 (118-196)||(38216015-38216093)
chr4 (193-281)||(34326143-34326230)
chr4 (94-156)||(33721704-33721766)
chr4 (182-237)||(32599765-32599820)
chr4 (96-170)||(16572251-16572325)
chr4 (165-218)||(40413086-40413139)
chr4 (94-172)||(44884424-44884503)
[»] chr6 (10 HSPs)
chr6 (108-294)||(9425503-9425691)
chr6 (105-294)||(6657887-6658075)
chr6 (94-286)||(19780228-19780421)
chr6 (94-293)||(180337-180537)
chr6 (117-248)||(34837146-34837278)
chr6 (193-293)||(12143670-12143770)
chr6 (98-251)||(1856752-1856905)
chr6 (221-293)||(5428827-5428899)
chr6 (95-169)||(3611560-3611633)
chr6 (98-235)||(7926806-7926944)
[»] chr2 (29 HSPs)
chr2 (97-288)||(7011095-7011284)
chr2 (95-288)||(14200323-14200516)
chr2 (119-294)||(32872363-32872539)
chr2 (159-294)||(45723867-45724003)
chr2 (195-293)||(34309311-34309409)
chr2 (121-249)||(31404969-31405098)
chr2 (94-293)||(38214110-38214310)
chr2 (94-248)||(39063590-39063745)
chr2 (91-293)||(38496467-38496670)
chr2 (98-251)||(16781263-16781416)
chr2 (94-247)||(40503872-40504026)
chr2 (101-248)||(3268802-3268950)
chr2 (101-248)||(3269361-3269509)
chr2 (101-248)||(3269920-3270068)
chr2 (95-247)||(40442716-40442869)
chr2 (94-293)||(40664231-40664432)
chr2 (97-282)||(35310806-35310994)
chr2 (204-293)||(13027910-13027998)
chr2 (94-278)||(19285877-19286062)
chr2 (91-277)||(2287486-2287672)
chr2 (121-196)||(34262733-34262809)
chr2 (94-148)||(21794853-21794907)
chr2 (98-179)||(4015854-4015934)
chr2 (224-293)||(21229611-21229680)
chr2 (193-277)||(2315509-2315593)
chr2 (97-153)||(3711930-3711985)
chr2 (98-141)||(44883267-44883310)
chr2 (181-238)||(31365047-31365104)
chr2 (181-248)||(21794921-21794989)
[»] chr8 (17 HSPs)
chr8 (98-289)||(38209474-38209666)
chr8 (102-294)||(36408135-36408327)
chr8 (94-238)||(36054813-36054958)
chr8 (94-293)||(8251233-8251433)
chr8 (97-251)||(31658853-31659007)
chr8 (123-289)||(5923844-5924015)
chr8 (94-248)||(16890264-16890422)
chr8 (94-251)||(1445350-1445508)
chr8 (94-293)||(2207769-2207967)
chr8 (104-248)||(2152328-2152473)
chr8 (97-156)||(40694232-40694291)
chr8 (195-248)||(30653627-30653680)
chr8 (181-238)||(30870747-30870804)
chr8 (141-248)||(43698930-43699036)
chr8 (195-248)||(2520129-2520182)
chr8 (94-171)||(30112499-30112576)
chr8 (182-242)||(37993221-37993281)
[»] chr3 (26 HSPs)
chr3 (122-288)||(30041262-30041429)
chr3 (159-293)||(43105097-43105233)
chr3 (143-294)||(35104715-35104866)
chr3 (140-293)||(30577831-30577984)
chr3 (94-294)||(24650120-24650322)
chr3 (181-294)||(49983793-49983908)
chr3 (98-293)||(22923629-22923828)
chr3 (102-179)||(49983561-49983638)
chr3 (102-248)||(41559992-41560133)
chr3 (98-168)||(43105935-43106004)
chr3 (98-248)||(35455309-35455456)
chr3 (95-288)||(40344888-40345080)
chr3 (94-293)||(45261361-45261558)
chr3 (94-248)||(17003573-17003727)
chr3 (96-248)||(43320133-43320280)
chr3 (98-191)||(32211842-32211936)
chr3 (193-289)||(42279191-42279287)
chr3 (97-221)||(38854614-38854739)
chr3 (94-248)||(8825355-8825508)
chr3 (94-289)||(46918418-46918613)
chr3 (99-170)||(25295127-25295198)
chr3 (194-249)||(27828544-27828599)
chr3 (123-238)||(49787770-49787886)
chr3 (185-252)||(52596618-52596686)
chr3 (205-293)||(25294809-25294897)
chr3 (98-150)||(50452386-50452438)
[»] scaffold0015 (1 HSPs)
scaffold0015 (98-294)||(38783-38979)
[»] chr7 (25 HSPs)
chr7 (94-288)||(10599706-10599901)
chr7 (94-286)||(14568354-14568547)
chr7 (102-248)||(41508105-41508252)
chr7 (193-294)||(10409790-10409893)
chr7 (98-293)||(14658727-14658921)
chr7 (97-194)||(42935454-42935552)
chr7 (98-247)||(7307441-7307592)
chr7 (138-289)||(15033262-15033410)
chr7 (181-293)||(17757336-17757448)
chr7 (97-171)||(2195805-2195879)
chr7 (98-179)||(17757477-17757558)
chr7 (202-278)||(42935834-42935911)
chr7 (97-242)||(14650104-14650247)
chr7 (193-242)||(13777737-13777786)
chr7 (98-251)||(37048576-37048735)
chr7 (195-251)||(45072511-45072567)
chr7 (98-211)||(46101245-46101359)
chr7 (102-171)||(12506713-12506782)
chr7 (97-248)||(20949073-20949224)
chr7 (213-288)||(15968471-15968546)
chr7 (102-156)||(46341502-46341556)
chr7 (102-171)||(12485281-12485350)
chr7 (121-237)||(18145799-18145916)
chr7 (213-281)||(20022046-20022114)
chr7 (142-221)||(35333328-35333405)
[»] scaffold0006 (1 HSPs)
scaffold0006 (105-294)||(131735-131927)
[»] scaffold1809 (1 HSPs)
scaffold1809 (94-289)||(452-648)
[»] chr5 (15 HSPs)
chr5 (98-293)||(17686233-17686427)
chr5 (117-248)||(11983578-11983709)
chr5 (100-202)||(3257251-3257354)
chr5 (102-235)||(6688792-6688928)
chr5 (101-293)||(18705003-18705196)
chr5 (103-293)||(2225586-2225777)
chr5 (95-170)||(27193009-27193084)
chr5 (97-242)||(17693562-17693705)
chr5 (114-238)||(19296165-19296288)
chr5 (94-293)||(3629160-3629360)
chr5 (91-142)||(1962962-1963013)
chr5 (201-288)||(33432787-33432873)
chr5 (193-248)||(39569147-39569202)
chr5 (181-249)||(14417941-14418009)
chr5 (182-278)||(19090208-19090303)
[»] scaffold0024 (1 HSPs)
scaffold0024 (97-293)||(154340-154537)
[»] scaffold0836 (1 HSPs)
scaffold0836 (94-293)||(3019-3219)
[»] scaffold0088 (1 HSPs)
scaffold0088 (97-247)||(51273-51424)
[»] scaffold0026 (1 HSPs)
scaffold0026 (94-193)||(68798-68895)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 27442613 - 27442322
Alignment:
Q  1 gtattagcaatgtttcctctgtgccgctctccaatgatctttttatactctctttggttctatttataagaaaattctatnnnnnnnnncttagtcctat 100  Q
    ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| || ||||||||||||||||| |           ||| |||||||    
T  27442613 gtattagcaatgtttcctctgcgccgctctccaatcatctttt-atactctctttagtactatttataagaaaattttc-aaaaaaaaacttggtcctat 27442516  T
Q  101 ttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttcaatattagtggatatattta 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||    
T  27442515 ttataagaaaaaatcacaacttttaaagtatatttagtgtttaaaagacttttctaaccctcatttaatgttggtctttcaatattaatgggtatattta 27442416  T
Q  201 atacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtttc 294  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  27442415 atacttcacaaatttttatgaggatatatttgtaaaaacattcaaaaaattgcaacaactaatgattgtcttggttttgataatttttggtttc 27442322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 94 - 294
Target Start/End: Original strand, 32715690 - 32715890
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtcttt-caatattagtgga 192  Q
    ||||||||||||||||||| |||||| |||||||||  ||||| |||||||||| ||||||||  ||||||||||||||| ||||| ||||||||||||     
T  32715690 gtcctatttataagaaaaagtcacaaattttaaggtc-atttattgtttaaaagtcttttctagccctcatttaatgttgatcttttcaatattagtggg 32715788  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtt 292  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  32715789 tatatttaatacttcacaaatttttatgaggatatatttgtaaaaacattcaaaaaattacaacaactaatgattgtcttggttttgatgatttttggtt 32715888  T
Q  293 tc 294  Q
    ||    
T  32715889 tc 32715890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 94 - 267
Target Start/End: Complemental strand, 17971513 - 17971338
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtgga 192  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||      
T  17971513 gtcctatttataagaaaaagtcacaacttttaaggtatatttattgtttaaaagacttttctaaccctcatttaatgttggtcttttcaatattagtgtg 17971414  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattc-aaaaaattgcaacaactgatgatt 267  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||| ||||||    
T  17971413 tatatttaatacttcacaaatttttaagagggtatatttgtaaaaacattcaaaaaaattacaacaactcatgatt 17971338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 102 - 294
Target Start/End: Complemental strand, 28724106 - 28723914
Alignment:
Q  102 tataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatatattta 200  Q
    ||||||||||| |||||||||| || ||  ||||| | |||||||||||||||||| ||||| ||||||||  |||||  ||||||||||| ||||||||    
T  28724106 tataagaaaaagtcacaacttt-aatgtgcatttattatttaaaagacttttctaaccctcaattaatgtttatctttttaatattagtggttatattta 28724008  T
Q  201 atacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtttc 294  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||  || ||||||||||||||| |||||||||||| ||||    
T  28724007 atacttcacaaatttttatgagggtatatctgtaaaagcattcaaaaaattacaaccgctaatgattgtcttggttatgatgatttttgatttc 28723914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 105 - 294
Target Start/End: Original strand, 13603078 - 13603270
Alignment:
Q  105 aagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatatatttaat- 202  Q
    |||||||| |||||||||| |||||  ||||| |||| ||||||||||||||| | ||| | || ||| ||||||  ||||||||||| ||||||||||     
T  13603078 aagaaaaagtcacaacttt-aaggtgcatttattgttcaaaagacttttctaaccttcaataaaagtttgtctttttaatattagtggttatatttaata 13603176  T
Q  203 --acttcacaaatttttatgagagtatatttgt-aaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtttc 294  Q
      |||||||||||||||||||| |||||||||| |||||||||| ||||||| |||  ||| ||||||||||| |||||||||||||||| ||||    
T  13603177 atacttcacaaatttttatgagggtatatttgtaaaaaacattc-aaaaattacaattactaatgattgtcttcgttttgatgatttttgctttc 13603270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 202 - 294
Target Start/End: Complemental strand, 45691643 - 45691551
Alignment:
Q  202 tacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtttc 294  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| || ||||||||||||||||||||||||| ||||    
T  45691643 tacttcacaaatttttatgagggtatatttgtaaaaatattcaaaaaattacaacaactaataattgtcttggttttgatgatttttgatttc 45691551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 293
Target Start/End: Complemental strand, 28165273 - 28165076
Alignment:
Q  97 ctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatat 195  Q
    |||||||||| ||||  |||||||||| |||||||| ||| || |||||||| |||| ||  ||||||| | | ||  |||||  |||||| || ||| |    
T  28165273 ctatttataataaaatgtcacaactttaaaggtatagttattgcttaaaagatttttttacccctcattaagtctttatctttttaatattggtagatgt 28165174  T
Q  196 atttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggttt 293  Q
    |||||||  ||||||| ||||||| || ||||||||||||||| |||||||||||| ||| || |||||||||| |||||||| ||| || |||||||    
T  28165173 atttaatgtttcacaattttttataagggtatatttgtaaaaatattcaaaaaattacaataattgatgattgtattggttttaatgtttcttggttt 28165076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 248
Target Start/End: Original strand, 31152432 - 31152585
Alignment:
Q  94 gtcctatttataagaaaaa-atcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttcaatattagtgga 192  Q
    ||||||||||||| | ||| ||||||||||||||| | |  ||| || |||||||||||| |||  ||||||||||||||  ||||| |||||||||| |    
T  31152432 gtcctatttataaaagaaatatcacaacttttaagatgtcgttattgcttaaaagactttgctacccctcatttaatgtttctcttttaatattagtgaa 31152531  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
      ||||||||  |||||  ||||||||||| ||||||||||||||| |||||||||    
T  31152532 cgtatttaatgtttcac--atttttatgagcgtatatttgtaaaaatattcaaaaa 31152585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 288
Target Start/End: Complemental strand, 36437350 - 36437155
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagt-gg 191  Q
    ||||||||||||||||||  ||||||||||||||| ||| ||| || ||||||||||||| ||  |||||||||||||  ||| ||| ||||||||| ||    
T  36437350 gtcctatttataagaaaatgtcacaacttttaagg-atagttattgcttaaaagacttttttatccctcatttaatgtctgtctttttaatattagtggg 36437252  T
Q  192 atatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgattttt 288  Q
    || ||||||||  |||||||  || ||| || |||||||||||||||  || ||||| || |||||| | ||| | |  |||||||||||| |||||    
T  36437251 atgtatttaatgtttcacaacattctataagggtatatttgtaaaaatgtttaaaaagttacaacaattaatgctggcattggttttgatggttttt 36437155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 94 - 248
Target Start/End: Original strand, 3574723 - 3574880
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagt--g 190  Q
    ||||||||||||||||||  ||||||||||| |  | || ||| ||||||||| | || ||||  ||||||||||||||  || ||| ||||||| |  |    
T  3574723 gtcctatttataagaaaatgtcacaacttttcaaatgtagttattgtttaaaaaatttgtctacccctcatttaatgtttatcattttaatattaatttg 3574822  T
Q  191 gatatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
     || ||||||||| ||||||| ||||||| ||||||||||| ||||||||||||||||    
T  3574823 aatgtatttaatatttcacaattttttataagagtatatttataaaaacattcaaaaa 3574880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 293
Target Start/End: Original strand, 42745541 - 42745740
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtgga 192  Q
    ||||||||||||||||||  |||||| |||| | ||||| ||| ||||||||| |||||| ||  |||||||||| | | | ||||  ||||||||||||    
T  42745541 gtcctatttataagaaaatgtcacaatttttgaagtataattattgtttaaaatactttt-tatccctcatttaaggattgcctttttaatattagtgga 42745639  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtt 292  Q
    | ||||||||  |||||||  || ||| || |||||||||||||||  || ||||| || | |||| | ||||| |  |||||||||||| |||||||||    
T  42745640 tgtatttaatgtttcacaacattctataagggtatatttgtaaaaatgtttaaaaagttacgacaattaatgatagcattggttttgatgttttttggtt 42745739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 39150324 - 39150187
Alignment:
Q  101 ttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggt-ctttcaatattagtggatatattt 199  Q
    ||||||||||| ||||| ||||||||||| || ||| || ||||||||||||||||  ||| ||||||||||  |  ||| ||||||| ||  | |||||    
T  39150324 ttataagaaaatatcactacttttaaggtgtagttattgcttaaaagacttttctaccccttatttaatgtttttgtttttaatattaatgagtgtattt 39150225  T
Q  200 aatacttcacaaatttttatgagagtatatttgtaaaaa 238  Q
    ||| |||||| || ||||||||| |||||||||||||||    
T  39150224 aatgcttcac-aacttttatgagggtatatttgtaaaaa 39150187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 248
Target Start/End: Complemental strand, 9851963 - 9851809
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttcaa-tattagtgga 192  Q
    ||||||||||||||||||  ||||||||||||| || || ||| || ||||| ||| ||| ||  ||| ||||||||||  ||||| || |||||||||     
T  9851963 gtcctatttataagaaaatgtcacaacttttaaagtgtagttattgcttaaatgacctttttatccct-atttaatgtttctcttttaaatattagtggg 9851865  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    ||||||||||  ||||||   |||||| |  ||||||||||||||| |||||||||    
T  9851864 tatatttaatgtttcacagtattttataaaggtatatttgtaaaaatattcaaaaa 9851809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 222
Target Start/End: Original strand, 11435553 - 11435678
Alignment:
Q  97 ctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatg-ttggtctttcaatattagtggatat 195  Q
    |||||||||||||||  ||||||||| ||||||||| ||| ||||||||| |||||| ||    | |||||||| ||| | ||| ||||||||||||| |    
T  11435553 ctatttataagaaaatgtcacaacttataaggtataattattgtttaaaa-acttttatatcatttatttaatgtttgtttttttaatattagtggatgt 11435651  T
Q  196 atttaatacttcacaaatttttatgag 222  Q
    ||||||| | |||||| ||||||||||    
T  11435652 atttaatgcatcacaattttttatgag 11435678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 17988436 - 17988358
Alignment:
Q  92 tagtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatg 170  Q
    |||||||| |||||||||||  |||||||||||||||| || ||| |||||||||||||||| ||  ||| ||||||||    
T  17988436 tagtcctacttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttttaccccttatttaatg 17988358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 249
Target Start/End: Original strand, 46443700 - 46443853
Alignment:
Q  95 tcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttcaatattagtggata 194  Q
    |||||||||||||||||  |||||||||||||||| || ||| |  |||||| |||||| ||  |||||||||  |||    ||| ||| |||||| ||     
T  46443700 tcctatttataagaaaacgtcacaacttttaaggtgtaattattacttaaaaaacttttttatccctcatttatagttctctttttaatgttagtgaatg 46443799  T
Q  195 tatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaa 249  Q
    ||| ||||  ||||| |||||||||| | ||||||||||||||| ||||||||||    
T  46443800 tatataatgtttcac-aatttttatgtgggtatatttgtaaaaatattcaaaaaa 46443853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 248
Target Start/End: Complemental strand, 31181199 - 31181047
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatg--ttggtctttcaatattagtggatat 195  Q
    ||||||||||||||  |||||||||||||  |||| ||| |||||||||||||||| ||  | ||||||||||  ||  | ||| |||||||| |  | |    
T  31181199 tatttataagaaaatgtcacaacttttaacttatagttattgtttaaaagacttttttacacttcatttaatgttttttttttttaatattagcgagtgt 31181100  T
Q  196 atttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    |||||||  ||||||| ||| ||| || ||||| ||||||||| |||||||||    
T  31181099 atttaatgtttcacaattttctataagggtatacttgtaaaaatattcaaaaa 31181047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 227
Target Start/End: Original strand, 28469930 - 28470064
Alignment:
Q  93 agtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttcaa-tattagtgg 191  Q
    |||||||||||||| ||||  |||||| ||||||||| || ||| |  ||||| | |||||||| |||| ||||||||||  ||||| || |||| ||||    
T  28469930 agtcctatttataaaaaaatgtcacaaattttaaggtgtagttattacttaaatgtcttttcta-tccttatttaatgtttctcttttaaatatttgtgg 28470028  T
Q  192 atatatttaatacttcacaaatttttatgagagtat 227  Q
     | ||||||||  ||||||| |||||||||||||||    
T  28470029 gtgtatttaatgtttcacaattttttatgagagtat 28470064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 31003731 - 31003677
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaaga 148  Q
    ||||||||||||||||||  |||||||||||||||| || ||| |||||||||||    
T  31003731 gtcctatttataagaaaatgtcacaacttttaaggtgtagttactgtttaaaaga 31003677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 32800405 - 32800462
Alignment:
Q  193 tatatttaatacttcacaaatttttatgagag--tatatttgtaaaaacattcaaaaa 248  Q
    ||||||||||| ||||||||||| |||||| |  || |||||||||||||||||||||    
T  32800405 tatatttaatatttcacaaatttctatgagtggatacatttgtaaaaacattcaaaaa 32800462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 98 - 288
Target Start/End: Complemental strand, 25376991 - 25376800
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtcttt-caatattagtggatata 196  Q
    |||||| |||||||| |||||  |||||||||||| ||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||| |||  ||||    
T  25376991 tatttacaagaaaaagtcacagattttaaggtataattattgtttaaaagacttttctaaccctcatttaatgttgatcttttcaatatttgtgagtata 25376892  T
Q  197 tttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgattttt 288  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  25376891 tttaatacttcacaaatttttaagagggtatatttgtaaaaacattcaaaaaattacaacaactaatgattgtcttggttttgatgattttt 25376800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 54863921 - 54864020
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtgga 192  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||  |||||||||||||| || ||||||||||||||||    
T  54863921 gtcctatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaaggcttttctaactctcatttaatgttgatcttttcaatattagtgga 54864020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 18838752 - 18838893
Alignment:
Q  97 ctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggatat 195  Q
    |||||||| ||||||  ||| ||||||||||||||| ||| |||||||||||||||||| | |||||||||||| |  || ||| ||||||||||| | |    
T  18838752 ctatttatgagaaaatgtcataacttttaaggtataattattgtttaaaagacttttct-accctcatttaatgattatctttttaatattagtgggtgt 18838850  T
Q  196 atttaatacttcacaaatttttatgagagtatatttgtaaaaa 238  Q
    |||||||  ||||||| |||||||||| |||||||||||||||    
T  18838851 atttaatgtttcacaattttttatgagggtatatttgtaaaaa 18838893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 293
Target Start/End: Complemental strand, 31707480 - 31707303
Alignment:
Q  114 tcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatatatttaatacttcacaaa 212  Q
    |||||||||||||||| || ||| || ||| ||||||||||||  ||| |||||||||| ||||||  ||||||||||| | |||   || ||||| |||    
T  31707480 tcacaacttttaaggtgtagttattgcttagaagacttttctaccccttatttaatgtttgtctttttaatattagtgggtgtat---atgcttcataaa 31707384  T
Q  213 tttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggttt 293  Q
    |||||||||| ||||||||||||||| ||||||||| || ||  || | |||| ||| ||||||||| || ||||||||||    
T  31707383 tttttatgagggtatatttgtaaaaatattcaaaaagttacactaattaatgagtgtattggttttgttgttttttggttt 31707303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 246
Target Start/End: Complemental strand, 42312556 - 42312399
Alignment:
Q  98 tatttataagaaaa-aatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc--------aatattag 188  Q
    ||||||||| |||| ||||||||||||||||||||| ||| || ||||||||||||||||  | |  ||| ||||| ||||||         ||||||||    
T  42312556 tatttataaaaaaataatcacaacttttaaggtatagttattgcttaaaagacttttctatcctttgttttatgtttgtcttttttttttttaatattag 42312457  T
Q  189 tggatatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaa 246  Q
     |||||||||| || |||||||| |||||||||| ||||||||||||||| |||||||    
T  42312456 aggatatattttatgcttcacaattttttatgagggtatatttgtaaaaatattcaaa 42312399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 288
Target Start/End: Original strand, 25382395 - 25382541
Alignment:
Q  142 taaaagacttttctaatcctcatttaatgttggtctttcaa-tattagtggatatatttaatacttcacaaatttttatgagagtatatttgtaaaaaca 240  Q
    |||| ||||||| ||  ||| |||||||||| ||||||  | ||||||||  ||| |||||||||||||||||||| || || |||||||||| ||||||    
T  25382395 taaatgacttttgtagcccttatttaatgttagtctttttagtattagtgagtatttttaatacttcacaaattttcataagggtatatttgt-aaaaca 25382493  T
Q  241 ttcaaaaaattgcaacaactgatgattgtcttggttttgatgattttt 288  Q
    ||||||||||||| | || | || ||||||||| |||||||| |||||    
T  25382494 ttcaaaaaattgccataattaattattgtcttgattttgatgtttttt 25382541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 21128097 - 21128171
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgtt 172  Q
    ||||||||||||||  ||| ||||||||| ||||||||| | ||||||||||||||| || |||||||| |||||    
T  21128097 tatttataagaaaatgtcataacttttaatgtatatttattttttaaaagacttttccaaccctcattttatgtt 21128171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 38216015 - 38216093
Alignment:
Q  118 aacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttcaatattagtggatata 196  Q
    ||||||||||||||||||| ||  ||||||| |||||||  | |||||||||||| |||||| | ||||||||||||||    
T  38216015 aacttttaaggtatatttattgcataaaagatttttctatccttcatttaatgtttgtcttttattattagtggatata 38216093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 34326230 - 34326143
Alignment:
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgat 281  Q
    ||||||||||| |||||| ||||||||||   ||||||||| |||||||| ||||| ||  ||||||| |||||||||||| |||||||    
T  34326230 tatatttaatatttcacatatttttatgatgatatatttgt-aaaacatttaaaaagttagaacaactaatgattgtcttgattttgat 34326143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 33721766 - 33721704
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttcta 156  Q
    ||||||||||||||||||  |||||| |||||| || || ||| |||||||||||||||||||    
T  33721766 gtcctatttataagaaaatgtcacaatttttaatgtgtagttattgtttaaaagacttttcta 33721704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 32599820 - 32599765
Alignment:
Q  182 atattagtggatatatttaatacttcacaaatttttatgagagtatatttgtaaaa 237  Q
    |||||||||||| |||||||| |||||||| |||||||||  |||||||| |||||    
T  32599820 atattagtggatgtatttaatgcttcacaattttttatgaaggtatatttataaaa 32599765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 16572251 - 16572325
Alignment:
Q  96 cctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatg 170  Q
    ||||||||||||||||  |||||||||||||||| || ||| || |||| ||| |||| ||  ||||||||||||    
T  16572251 cctatttataagaaaatgtcacaacttttaaggtgtagttattgcttaacagaattttttatccctcatttaatg 16572325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 40413139 - 40413086
Alignment:
Q  165 ttaatgttggtctttcaatattagtggatatatttaatacttcacaaattttta 218  Q
    |||||||| || ||| ||||||||||||||||||||||  ||||||| ||||||    
T  40413139 ttaatgtttgtttttaaatattagtggatatatttaatgtttcacaatttttta 40413086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 44884503 - 44884424
Alignment:
Q  94 gtcctatttataagaaaaaatcacaactttt--aaggtatatttagtgtttaaaagacttttctaatcctcatttaatgtt 172  Q
    ||||||| ||||||||||  |||||||||||  ||||| || ||| |||||||||||||||| ||  ||||||||||||||    
T  44884503 gtcctatatataagaaaatgtcacaacttttttaaggtgtagttattgtttaaaagactttt-tatccctcatttaatgtt 44884424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 108 - 294
Target Start/End: Original strand, 9425503 - 9425691
Alignment:
Q  108 aaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggatatatttaatactt 206  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||  || |||  ||| ||||| |||||||||||||||    
T  9425503 aaaaaatcacaacttttgaggtatatttattgtttaaaagacttttttaatcctcatttaatgtttatctttttcataatagtgaatatatttaatactt 9425602  T
Q  207 cacaaatttttatgagagtatatttgtaaaaacattc-aaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtttc 294  Q
    |||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  9425603 cacagaattttatgagagtatatttgtaaaaacattcaaaaaaattgcaacaactaatgattttcttggttttgatgatttttggtttc 9425691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 105 - 294
Target Start/End: Original strand, 6657887 - 6658075
Alignment:
Q  105 aagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatatatttaata 203  Q
    |||||||| |||||||||| |||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||||  ||||||||||| |||||||||||    
T  6657887 aagaaaaagtcacaacttt-aaggtacatttattgtttaaatgacttttctaaccctcatttaatgtttgtctttttaatattagtgggtatatttaata 6657985  T
Q  204 cttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtttc 294  Q
    ||||||||||||||||||| ||||||||||||| ||||| |||||||| |||| ||| |||||||||  ||||||||||||||||||||||    
T  6657986 cttcacaaatttttatgagggtatatttgtaaatacatt-aaaaaattacaaccactaatgattgtcaaggttttgatgatttttggtttc 6658075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 94 - 286
Target Start/End: Original strand, 19780228 - 19780421
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtgga 192  Q
    ||||||| ||||||||||| |  ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||  || |||||| ||||||||     
T  19780228 gtcctatatataagaaaaagtttcaacttttaagatatatttattgtttaaaagacttttctaaccctcatttaatgtttctcttttcaaaattagtggg 19780327  T
Q  193 tatatttaatacttcacaaattt-ttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgattt 286  Q
    ||||||||||||||||||||||| | ||| | ||||||||||||||||||| |||||||| ||| |||| |||||| ||||||||||||||||||    
T  19780328 tatatttaatacttcacaaatttataatgcg-gtatatttgtaaaaacattaaaaaaattacaataactaatgattatcttggttttgatgattt 19780421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 293
Target Start/End: Original strand, 180337 - 180537
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtgga 192  Q
    |||||||||||||||||| ||||||| ||||||| | || ||| || ||||||||||||| ||  ||| |||||||||| ||| ||| ||||||||| ||    
T  180337 gtcctatttataagaaaatatcacaatttttaagatgtagttattgcttaaaagacttttataccccttatttaatgtttgtctttttaatattagtcga 180436  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtt 292  Q
    | |||||||  ||||| || ||||||| || ||||||||||||| | ||||||||| || ||  || | |||| ||| |||||||||||| |||||||||    
T  180437 tgtatttaacgcttcaaaattttttataagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattggttttgatgttttttggtt 180536  T
Q  293 t 293  Q
    |    
T  180537 t 180537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 248
Target Start/End: Complemental strand, 34837278 - 34837146
Alignment:
Q  117 caacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatatatttaatacttcacaaattt 215  Q
    ||||||||||||| ||  || |||||||||||||||| ||  ||| |||||||| | ||||||  ||||||| ||||| |||| ||| |||||||| |||    
T  34837278 caacttttaaggtgtagctattgtttaaaagacttttttaccccttatttaatgcttgtctttttaatattaatggatgtattgaatgcttcacaatttt 34837179  T
Q  216 ttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    ||||||| ||||||||||||||| |||||||||    
T  34837178 ttatgagggtatatttgtaaaaatattcaaaaa 34837146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 293
Target Start/End: Complemental strand, 12143770 - 12143670
Alignment:
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtt 292  Q
    |||||||||| |||||||| |||||||||| || |||||||||||| ||||||||| || ||  || | |||||||  |||||||||||  |||||||||    
T  12143770 tatatttaatgcttcacaattttttatgagggtgtatttgtaaaaatattcaaaaagttacattaattaatgattgcattggttttgatattttttggtt 12143671  T
Q  293 t 293  Q
    |    
T  12143670 t 12143670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 251
Target Start/End: Original strand, 1856752 - 1856905
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtat-atttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggatat 195  Q
    ||||||||| |||| |||||||||||||| |||| | ||| |||||||||||||||||||   |||||||||| ||  || ||| ||||||| ||||  |    
T  1856752 tatttataaaaaaatatcacaacttttaa-gtatcagttattgtttaaaagacttttctatctctcatttaatatttctctttttaatattaatggaagt 1856850  T
Q  196 atttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaatt 251  Q
    |||||||  || || | ||| |||||||||||||||||||||| ||| ||||||||    
T  1856851 atttaatgttttac-attttgtatgagagtatatttgtaaaaatatttaaaaaatt 1856905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 5428827 - 5428899
Alignment:
Q  221 agagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggttt 293  Q
    |||||||||||||||||| ||| |||||||| |||||| | |||||||   ||||||||||  ||||||||||    
T  5428827 agagtatatttgtaaaaatatttaaaaaattacaacaattaatgattgcaatggttttgatattttttggttt 5428899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 3611560 - 3611633
Alignment:
Q  95 tcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaat 169  Q
    |||||||||||||||||  | |||||||| |||||||| ||| ||||||||| | |||||||  |||||||||||    
T  3611560 tcctatttataagaaaatgttacaacttt-aaggtatagttattgtttaaaatatttttctatccctcatttaat 3611633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 235
Target Start/End: Original strand, 7926806 - 7926944
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatata 196  Q
    |||||||||||||| |||||||||||||| || || ||| | |||| || |||| | ||  ||| |||||||  | ||||||  |||||||  |  | ||    
T  7926806 tatttataagaaaatatcacaacttttaaagtgtaattattttttagaaaacttatataccccttatttaatagttgtctttttaatattaaagagtgta 7926905  T
Q  197 tttaatacttcacaaatttttatgagagtatatttgtaa 235  Q
    |||||| |||||||| |||||||||| ||||||||||||    
T  7926906 tttaatgcttcacaattttttatgagggtatatttgtaa 7926944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 97 - 288
Target Start/End: Original strand, 7011095 - 7011284
Alignment:
Q  97 ctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttcaatattagtggatata 196  Q
    |||||||||||||||| |||||| ||||||| || ||||| |||||||||||||||||||| ||||||||||| |     ||||||||||||||| ||||    
T  7011095 ctatttataagaaaaagtcacaatttttaagatacatttattgtttaaaagacttttctaaccctcatttaatatct---tttcaatattagtgggtata 7011191  T
Q  197 tttaatacttcacaaatttttatgagagtatatttgtaaaaacattc-aaaaaattgcaacaactgatgattgtcttggttttgatgattttt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||| ||||||||||||||    
T  7011192 tttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaaattgcaacaactactgattgtcttgattttgatgattttt 7011284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 95 - 288
Target Start/End: Complemental strand, 14200516 - 14200323
Alignment:
Q  95 tcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtcttt-caatattagtggat 193  Q
    |||||||||||||||||  |||||||||||||| || ||||| | |||||||||||||| ||| ||||||||||||||| ||||| |||||||||||  |    
T  14200516 tcctatttataagaaaag-tcacaacttttaagatacatttattatttaaaagacttttttaaccctcatttaatgttgatcttttcaatattagtgagt 14200418  T
Q  194 atatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgattttt 288  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   | |||| |||||||||||||||||||||||||||    
T  14200417 atatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattaggataactaatgattgtcttggttttgatgattttt 14200323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 119 - 294
Target Start/End: Original strand, 32872363 - 32872539
Alignment:
Q  119 acttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggatatatttaatacttcacaaattttt 217  Q
    ||||||||| || ||||| ||||||||||||||||| || ||| |||||||||| ||| ||| ||||||||||| ||||||||||||||||||| |||||    
T  32872363 acttttaagttacatttattgtttaaaagacttttccaaccctaatttaatgtttgtccttttaatattagtgggtatatttaatacttcacaatttttt 32872462  T
Q  218 atgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtttc 294  Q
    ||||| |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| |||||||||    
T  32872463 atgagggtatatttgtaaaaacattcaaaaaattacaaccactaatgattgtcttggttttgatgatctttggtttc 32872539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 159 - 294
Target Start/End: Complemental strand, 45724003 - 45723867
Alignment:
Q  159 cctcatttaatgttggtcttt-caatattagtggatatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaaca 257  Q
    ||||||||||| ||||||||| |||||||||| | |||||||||||||| | ||||||||||||   ||||||||||| |||||||||||||||  | ||    
T  45724003 cctcatttaatattggtcttttcaatattagtaggtatatttaatactttataaatttttatgaagatatatttgtaacaacattcaaaaaattagagca 45723904  T
Q  258 actgatgattgtcttggttttgatgatttttggtttc 294  Q
    ||| |||||||| ||||||||||||||||||||||||    
T  45723903 actaatgattgttttggttttgatgatttttggtttc 45723867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 195 - 293
Target Start/End: Original strand, 34309311 - 34309409
Alignment:
Q  195 tatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggttt 293  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||  ||| |||||||||||| |||||||||||||||||||    
T  34309311 tatttaatacttcacaaatttttatgagggtatatttgtaaaagcattcaaaaaattacaatcactaatgattgtcttgattttgatgatttttggttt 34309409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 121 - 249
Target Start/End: Original strand, 31404969 - 31405098
Alignment:
Q  121 ttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatatatttaatacttcacaaatttttat 219  Q
    |||||||||| ||||| | |||||||||||||||||| ||||||||||| || ||||||  |||||||||| ||||||||||||||||| |||||| |||    
T  31404969 ttttaaggtacatttattttttaaaagacttttctaaccctcatttaatatttgtctttttaatattagtgcatatatttaatacttcataaatttctat 31405068  T
Q  220 gagagtatatttgtaaaaacattcaaaaaa 249  Q
    |||  |||||||||||||| ||||||||||    
T  31405069 gaggatatatttgtaaaaatattcaaaaaa 31405098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 293
Target Start/End: Original strand, 38214110 - 38214310
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtgga 192  Q
    |||| |||||||||||||| |||||||||||||||| |||||| |||||||||||||||| ||  |||||||||||  |  || ||| |||||||||       
T  38214110 gtccaatttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatatccctcatttaatacttctctttttaatattagtatg 38214209  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtt 292  Q
    | ||||||||  ||||||| ||||||||||  |||||||||||||| ||||||||| || |   ||   |||||||| |||||||||||| |||||||||    
T  38214210 tgtatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaaagtttctttaatcaatgattgtattggttttgatgttttttggtt 38214309  T
Q  293 t 293  Q
    |    
T  38214310 t 38214310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 94 - 248
Target Start/End: Complemental strand, 39063745 - 39063590
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtgga 192  Q
    |||| |||||||||||||| |||||||||||||||| |||||| |||||||||||||||| || | ||||||||||  |  || ||| ||||||||||      
T  39063745 gtccaatttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatattgctcatttaatacttctctttttaatattagtgtg 39063646  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    | ||||||||  ||||||| ||||||||||  |||||||||||||| |||||||||    
T  39063645 tgtatttaatgtttcacaattttttatgaggttatatttgtaaaaatattcaaaaa 39063590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 293
Target Start/End: Original strand, 38496467 - 38496670
Alignment:
Q  91 ttagtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggt-ctttcaatattagt 189  Q
    |||||||||||||||||||||  ||| || |||||||||||| ||| |||||||||||| ||||||  ||| |||||| ||| ||  ||| |||||||||    
T  38496467 ttagtcctatttataagaaaatgtcagaatttttaaggtatagttattgtttaaaagacctttctaccccttatttaacgtttgtatttttaatattagt 38496566  T
Q  190 ggatatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttg 289  Q
     | | ||||||||  ||| || |||||||| || ||||||||||||||| ||||||||| || ||  || | ||||| |  |||||||||||| ||||||    
T  38496567 aggtgtatttaatgtttcgcacatttttatcagggtatatttgtaaaaatattcaaaaagttacactaattaatgatagcattggttttgatgttttttg 38496666  T
Q  290 gttt 293  Q
    ||||    
T  38496667 gttt 38496670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 251
Target Start/End: Original strand, 16781263 - 16781416
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtcttt-caatattagtggatata 196  Q
    ||||||||||||||| |||||||||| |||||||| ||| |||||||||||||||||||  ||| | |||||||| ||||||  ||||||||| | | ||    
T  16781263 tatttataagaaaaagtcacaacttt-aaggtataattaatgtttaaaagacttttctacgccttagttaatgtttgtctttgtaatattagtaggtgta 16781361  T
Q  197 tttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaatt 251  Q
    ||||||  ||||| | |||| ||||| ||||||||||| ||  ||||||||||||    
T  16781362 tttaatgtttcaccatttttaatgagggtatatttgtataattattcaaaaaatt 16781416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 247
Target Start/End: Original strand, 40503872 - 40504026
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtgga 192  Q
    |||| |||||||||||||  |||||||||||||||| || ||| ||||||||| |||||| ||  ||| ||||| |||| ||| ||| ||||||||| |     
T  40503872 gtcccatttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttttataccccttatttattgtttgtctttttaatattagtagg 40503971  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaa 247  Q
    |  ||||||| |||||||| |||||||||| |||||| |||||||| ||||||||    
T  40503972 tgcatttaatgcttcacaactttttatgagggtatatctgtaaaaatattcaaaa 40504026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 248
Target Start/End: Original strand, 3268802 - 3268950
Alignment:
Q  101 ttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggt-ctttcaatattagtggatatattt 199  Q
    ||||||||||| ||||||||||||||||| || ||| ||  |||||||||||||||  ||| ||||||||||  |  ||| ||||||| | | | |||||    
T  3268802 ttataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaataggtgtattt 3268901  T
Q  200 aatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    ||  |||||||| ||||||| || ||||||||||||||| |||||||||    
T  3268902 aaggcttcacaactttttataagggtatatttgtaaaaatattcaaaaa 3268950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 248
Target Start/End: Original strand, 3269361 - 3269509
Alignment:
Q  101 ttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggt-ctttcaatattagtggatatattt 199  Q
    ||||||||||| ||||||||||||||||| || ||| ||  |||||||||||||||  ||| ||||||||||  |  ||| ||||||| | | | |||||    
T  3269361 ttataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaataggtgtattt 3269460  T
Q  200 aatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    ||  |||||||| ||||||| || ||||||||||||||| |||||||||    
T  3269461 aaggcttcacaactttttataagggtatatttgtaaaaatattcaaaaa 3269509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 248
Target Start/End: Original strand, 3269920 - 3270068
Alignment:
Q  101 ttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggt-ctttcaatattagtggatatattt 199  Q
    ||||||||||| ||||||||||||||||| || ||| ||  |||||||||||||||  ||| ||||||||||  |  ||| ||||||| | | | |||||    
T  3269920 ttataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaataggtgtattt 3270019  T
Q  200 aatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    ||  |||||||| ||||||| || ||||||||||||||| |||||||||    
T  3270020 aaggcttcacaactttttataagggtatatttgtaaaaatattcaaaaa 3270068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 40442716 - 40442869
Alignment:
Q  95 tcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggat 193  Q
    |||||||||||||||||  |||||||||||||||| || ||| ||||||||| |||||| ||  ||| ||||| ||||  || ||| ||||||||| | |    
T  40442716 tcctatttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttttataccccttatttattgtttatctttttaatattagtaggt 40442815  T
Q  194 atatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaa 247  Q
      ||||||| |||||||| ||||||| || |||||| | |||||| ||||||||    
T  40442816 gcatttaatgcttcacaactttttataagggtatatctataaaaatattcaaaa 40442869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 293
Target Start/End: Original strand, 40664231 - 40664432
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc--aatattagtgg 191  Q
    |||| ||| |||||||||  |||||||| |||| || |||||| | |||||||||||||| ||  |||||||||||| |  |||||   || ||| |||     
T  40664231 gtccaattgataagaaaatttcacaactcttaaagtgtatttattatttaaaagacttttatatccctcatttaatgcttctcttttttaacattggtgt 40664330  T
Q  192 atatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggt 291  Q
     | ||||||||  ||||||| |||||| ||| |||||||||||| || ||||||||| || |   || | |||||||| |||||||||||| ||||||||    
T  40664331 gtgtatttaatgtttcacaattttttacgagggtatatttgtaagaatattcaaaaagtttctttaattaatgattgtattggttttgatgttttttggt 40664430  T
Q  292 tt 293  Q
    ||    
T  40664431 tt 40664432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 282
Target Start/End: Original strand, 35310806 - 35310994
Alignment:
Q  97 ctatttataagaaaaaat-cacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggt-ctttcaatattag---tgg 191  Q
    |||||||||||||||||| ||| ||||||||| |||||||| ||||||||||  |||| ||  ||| |||||||||| || |||| ||||||||   | |    
T  35310806 ctatttataagaaaaaatccactacttttaagatatatttattgtttaaaag-gttttttagcccttatttaatgtttgtcctttaaatattagtaatag 35310904  T
Q  192 atatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatg 282  Q
     ||||||||||| |  | | || | |||||| |||||||||||||| |||| ||||| ||| ||||| | || ||||||||||||||||||    
T  35310905 gtatatttaataatgtagagatatctatgagtgtatatttgtaaaatcatt-aaaaagttgtaacaatttattattgtcttggttttgatg 35310994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 293
Target Start/End: Original strand, 13027910 - 13027998
Alignment:
Q  204 cttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggttt 293  Q
    |||||||||||| ||||||  |||||||||||||| ||||||||| |||||||||   || |||| | ||||||||| ||||||||||||    
T  13027910 cttcacaaatttctatgaggatatatttgtaaaaatattcaaaaagttgcaacaatgaataattg-cgtggttttgacgatttttggttt 13027998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 278
Target Start/End: Original strand, 19285877 - 19286062
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtcttt-caatattagtgga 192  Q
    |||||||||||||| ||   |||||| ||||||||| || ||| ||  |||||||||||| ||  | ||||||||| || |||||| ||||||||||| |    
T  19285877 gtcctatttataagtaattgtcacaagttttaaggtgtagttattgcataaaagacttttatatccttcatttaatatttgtcttttcaatattagtgaa 19285976  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggtttt 278  Q
    | ||||||||  ||||||| ||| |||  |  |||||||||||||  ||| ||||| ||| ||||| | || ||||| ||||||||    
T  19285977 tgtatttaatggttcacaactttctatagggatatatttgtaaaattatttaaaaagttgtaacaattaataattgtattggtttt 19286062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 277
Target Start/End: Complemental strand, 2287672 - 2287486
Alignment:
Q  91 ttagtcctatttataagaaaaaa-tcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattag 188  Q
    ||||| || |||| ||||||||| |||||||||||||  |||||||| |  ||||||||||||| ||| | || |||||| ||  | |||  ||||||||    
T  2287672 ttagttctgtttaaaagaaaaaagtcacaacttttaaaatatatttatttgttaaaagactttt-taaccttcgtttaatatttttttttttaatattag 2287574  T
Q  189 tggatatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttt 277  Q
    | | ||||||||||| || ||||||||  |||| |||||| || |||||||||||||||  ||||||| | | || |||||||||||||    
T  2287573 tag-tatatttaatattttacaaatttcgatgaaagtataattataaaaacattcaaaatgttgcaactattaattattgtcttggttt 2287486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 34262733 - 34262809
Alignment:
Q  121 ttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggatata 196  Q
    |||||||||  ||||| |||||||||||||||||||| ||||| |||||||| ||| ||| ||||||||||| ||||    
T  34262733 ttttaaggttcatttattgtttaaaagacttttctaaccctcaattaatgtttgtctttttaatattagtggttata 34262809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 21794853 - 21794907
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaaga 148  Q
    |||| |||||||||||||| |||||||||||||||| |||| | |||||||||||    
T  21794853 gtccaatttataagaaaaattcacaacttttaaggtgtattaattgtttaaaaga 21794907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 4015934 - 4015854
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtcttt 179  Q
    ||||||||||||||| |||||||| | ||| |||| ||| |||||||||||||||||||  ||| | |||||||| ||||||    
T  4015934 tatttataagaaaaagtcacaactct-aagatatagttaatgtttaaaagacttttctaccccttagttaatgtttgtcttt 4015854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 21229611 - 21229680
Alignment:
Q  224 gtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggttt 293  Q
    ||||||||||||||| ||||||||| || ||| || | |||||||  |||||||| ||||||||||||||    
T  21229611 gtatatttgtaaaaatattcaaaaagttacaataattaatgattgcattggttttaatgatttttggttt 21229680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 2315593 - 2315509
Alignment:
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttt 277  Q
    ||||||||||| || ||||||||  |||| |||||| || |||||||||||||||  ||||||| | | || |||||||||||||    
T  2315593 tatatttaatattttacaaatttcgatgaaagtataattataaaaacattcaaaatgttgcaactattaattattgtcttggttt 2315509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 3711985 - 3711930
Alignment:
Q  97 ctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagactttt 153  Q
    |||||||||||||||  ||||||||||||||| ||| ||| ||||||||||||||||    
T  3711985 ctatttataagaaaatgtcacaacttttaagg-atagttattgtttaaaagactttt 3711930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 44883310 - 44883267
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtt 141  Q
    |||||||||||||| ||||||| |||||||||||||||| ||||    
T  44883310 tatttataagaaaatatcacaatttttaaggtatatttattgtt 44883267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 31365104 - 31365047
Alignment:
Q  181 aatattagtggatatatttaatacttcacaaatttttatgagagtatatttgtaaaaa 238  Q
    ||||||||||||| ||||||||| |||||||  || ||| || |||||||||||||||    
T  31365104 aatattagtggatgtatttaatatttcacaacattctataagtgtatatttgtaaaaa 31365047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 21794921 - 21794989
Alignment:
Q  181 aatattagtggatatatttaatacttcacaaattttt-atgagagtatatttgtaaaaacattcaaaaa 248  Q
    ||||||||||  | ||||||||  ||||||| ||||| ||||| ||||||||||||||| |||||||||    
T  21794921 aatattagtgtgtgtatttaatgtttcacaatttttttatgagggtatatttgtaaaaatattcaaaaa 21794989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 98 - 289
Target Start/End: Complemental strand, 38209666 - 38209474
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtcttt-caatattagtggatata 196  Q
    ||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| ||||    
T  38209666 tatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaagacttctctaaccctcatttaatgttggtcttttcaatattagtgggtata 38209567  T
Q  197 tttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttg 289  Q
    || |||||||||||||||||||  || |||||||| |||||| ||| |||||||| |||||| | |||||| |||||||||||||||||||||    
T  38209566 ttaaatacttcacaaatttttaaaagggtatatttataaaaatatttaaaaaatttcaacaagtaatgattatcttggttttgatgatttttg 38209474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 102 - 294
Target Start/End: Complemental strand, 36408327 - 36408135
Alignment:
Q  102 tataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatatattta 200  Q
    ||||||||||| |||||||||| |||||| ||||| ||||||| | |||||| ||| |||| ||||||||| ||||||  |||||||||||||||| |||    
T  36408327 tataagaaaaagtcacaacttt-aaggtacatttattgtttaacaaacttttttaaccctcgtttaatgtttgtctttttaatattagtggatataatta 36408229  T
Q  201 atacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtttc 294  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||  ||| ||| || |||||||| |||||||||||||||||||||    
T  36408228 atacttaacaaatttttatgagggtatatttgtaaaaacattcaaaaaattataactactaataattgtcttagttttgatgatttttggtttc 36408135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 238
Target Start/End: Original strand, 36054813 - 36054958
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtgga 192  Q
    ||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||| ||  ||| | |||||||| ||| ||| ||||||||||||    
T  36054813 gtcctatttataagaaaatgtcacaacttttaaggtatatttattgtttaaaagacttttataccccttaattaatgtttgtctttttaatattagtgga 36054912  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaa 238  Q
    | ||||||||||||| ||| |||| || || |||||||| ||||||    
T  36054913 tgtatttaatacttcccaatttttaataagggtatatttataaaaa 36054958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 94 - 293
Target Start/End: Original strand, 8251233 - 8251433
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtgga 192  Q
    |||||||||||||||||| ||||||||||||||||| || ||| || ||||||||| ||| |   | | |||||||| | ||||||  ||||||||||      
T  8251233 gtcctatttataagaaaatatcacaacttttaaggtgtaattattgcttaaaagacctttttccccattatttaatggttgtctttttaatattagtgag 8251332  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtt 292  Q
    | |||||||| |||||||| |||||||||| ||||||||||||||| |||||||||| | ||  || | |||| ||| |||||||||||| |||||||||    
T  8251333 tttatttaatgcttcacaattttttatgagggtatatttgtaaaaatattcaaaaaactacactaattaatgagtgtattggttttgatgttttttggtt 8251432  T
Q  293 t 293  Q
    |    
T  8251433 t 8251433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 97 - 251
Target Start/End: Original strand, 31658853 - 31659007
Alignment:
Q  97 ctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggatat 195  Q
    ||||||||||||||| ||||||||||||||| | || ||| |||||||||||||||| ||| | | |||||||||| ||| ||| |||| |||||||| |    
T  31658853 ctatttataagaaaatatcacaacttttaagatgtagttattgtttaaaagacttttttaacctttatttaatgtttgtctttttaatactagtggatgt 31658952  T
Q  196 atttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaatt 251  Q
    ||||||| || ||  ||||||||||||  |||||||||||||| ||||||||||||    
T  31658953 atttaatgctgca-taatttttatgaggatatatttgtaaaaatattcaaaaaatt 31659007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 289
Target Start/End: Original strand, 5923844 - 5924015
Alignment:
Q  123 ttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatatatttaatacttcacaaatttttatga 221  Q
    |||||||| ||||| ||||||||    |||||||| |||||||||||||| ||||||  ||||||||||  |||| ||||||||| ||||||||||||||    
T  5923844 ttaaggtacatttattgtttaaattttttttctaaccctcatttaatgtttgtctttttaatattagtgtgtataattaatactttacaaatttttatga 5923943  T
Q  222 gag----tatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttg 289  Q
    | |    ||||||| |||||||||| |||||||| | || ||| |||||| |||||||||||||||||||||    
T  5923944 gggcatatatatttttaaaaacatttaaaaaattactaccactaatgattatcttggttttgatgatttttg 5924015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 94 - 248
Target Start/End: Complemental strand, 16890422 - 16890264
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctt----tcaatattagt 189  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||  | | ||||| |||| || ||    | |||||||||    
T  16890422 gtcctatttatatgaaaatatcacaacttttaaggtatagttagtgtttcaaagacttttctaccctttatttattgtttgtttttttataaatattagt 16890323  T
Q  190 ggatatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    |  | ||||||||  ||||||| |||||||||| ||||||||||||||| |||||||||    
T  16890322 gagtttatttaatgtttcacaattttttatgagggtatatttgtaaaaatattcaaaaa 16890264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 94 - 251
Target Start/End: Original strand, 1445350 - 1445508
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtat-atttagtgtttaaaagacttttctaatcctcatttaatgttggtctttca-atattagtgg 191  Q
    ||||||||||||||||||  |||||||||||||||| | | ||| || ||||| ||||||||| ||||  ||||||||||  ||||| | |||||||||     
T  1445350 gtcctatttataagaaaatgtcacaacttttaaggtgtaagttattgcttaaatgacttttct-atccctatttaatgtttctcttttagatattagtga 1445448  T
Q  192 atatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaatt 251  Q
     | ||||||||  ||||||| |||| ||||  ||||||||||||||  ||||||||||||    
T  1445449 gtgtatttaatgtttcacaatttttaatgaaggtatatttgtaaaagtattcaaaaaatt 1445508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 293
Target Start/End: Original strand, 2207769 - 2207967
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtgga 192  Q
    |||||||||||| ||||| ||||||| ||||||| |  | ||| ||  | ||||| |||||||  ||| |||||||||| || |||  ||||||| |||     
T  2207769 gtcctatttata-gaaaatatcacaatttttaagatgcagttattgcgttaaagaattttctaccccttatttaatgtttgtatttttaatattaatggg 2207867  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtt 292  Q
    | |||||||| |||||||| |||||||||| ||||||||||||||| ||||||||| || ||  || | |||| |||  ||||||||||| ||||| |||    
T  2207868 tgtatttaatgcttcacaa-tttttatgagggtatatttgtaaaaatattcaaaaagttacactaaataatgagtgtaatggttttgatgtttttttgtt 2207966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 248
Target Start/End: Original strand, 2152328 - 2152473
Alignment:
Q  104 taagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc--tttcaatattagtggatatatttaa 201  Q
    |||||||| ||||||| ||||||||| | || | |  ||||||||||||||||  ||| ||||||||||  ||  ||| |||||||| |  | |||||||    
T  2152328 taagaaaatatcacaatttttaaggtgtgtt-attacttaaaagacttttctaccccttatttaatgtttatcttttttaatattagcgagtctatttaa 2152426  T
Q  202 tacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    | |||||||| ||||||| || |||||||| |||||| |||||||||    
T  2152427 tgcttcacaattttttataagggtatatttataaaaatattcaaaaa 2152473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 40694232 - 40694291
Alignment:
Q  97 ctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttcta 156  Q
    ||||||||||||||| |||||||||||| |||| || ||| || ||||||||||||||||    
T  40694232 ctatttataagaaaatatcacaactttttaggtgtaattattgcttaaaagacttttcta 40694291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 30653680 - 30653627
Alignment:
Q  195 tatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    ||||||||  |||||||||||||||||| ||||||||||||||  |||||||||    
T  30653680 tatttaatgtttcacaaatttttatgagggtatatttgtaaaattattcaaaaa 30653627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 30870804 - 30870747
Alignment:
Q  181 aatattagtggatatatttaatacttcacaaatttttatgagagtatatttgtaaaaa 238  Q
    ||||||||||||||||||||||  ||||||| ||||||| || |||||||||| ||||    
T  30870804 aatattagtggatatatttaatgtttcacaattttttataagggtatatttgtcaaaa 30870747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 43699036 - 43698930
Alignment:
Q  141 ttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggatatatttaatacttcacaaatttttatgagagtatatttgtaaaaac 239  Q
    |||||||||||||||||||||  ||||| |||  || ||| ||||||| || || | ||||||||||||||||||| ||  || ||||||| |||||||     
T  43699036 ttaaaagacttttctaatcctggtttaacgtttatcattttaatattattgaatgtttttaatacttcacaaatttcta--agtgtatattcgtaaaaaa 43698939  T
Q  240 attcaaaaa 248  Q
    |||||||||    
T  43698938 attcaaaaa 43698930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 2520182 - 2520129
Alignment:
Q  195 tatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    ||||||||  ||||||| ||||||||||  |||||||||||||| |||||||||    
T  2520182 tatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaaa 2520129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 30112576 - 30112499
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgt 171  Q
    ||||||||||||||||||  |||||| ||||||||| || ||| || |||||||| |||| ||  |||| ||||||||    
T  30112576 gtcctatttataagaaaatgtcacaaattttaaggtgtagttattgcttaaaagatttttttatccctcgtttaatgt 30112499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 37993221 - 37993281
Alignment:
Q  182 atattagtggatatatttaatacttcacaaatttttatgagagtatatttgtaaaaacatt 242  Q
    |||| |||||||||||||||||||| |||||||| |||| |  | ||||| ||||||||||    
T  37993221 atatgagtggatatatttaatactttacaaatttctatgtggatgtatttataaaaacatt 37993281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 122 - 288
Target Start/End: Complemental strand, 30041429 - 30041262
Alignment:
Q  122 tttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatatatttaatacttcacaaatttttatg 220  Q
    ||||||||||||||| |||||||||||||||||||| ||| | |||||||| ||||||  ||||||||||| ||||||||||||||||||||| ||||||    
T  30041429 tttaaggtatatttattgtttaaaagacttttctaacccttaattaatgtttgtctttttaatattagtggttatatttaatacttcacaaatctttatg 30041330  T
Q  221 agagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgattttt 288  Q
    || |||||||| ||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||    
T  30041329 agggtatatttataaaaacattcaaaaaattacaaccactaatgattgtcttggttttgatgattttt 30041262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 159 - 293
Target Start/End: Complemental strand, 43105233 - 43105097
Alignment:
Q  159 cctcatttaatgttggtcttt-caatattagtggatatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaa-aaaattgcaac 256  Q
    ||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||    
T  43105233 cctcatttaatgttgatcttttcaatattagtgggtatatttgatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaaattacaac 43105134  T
Q  257 aactgatgattgtcttggttttgatgatttttggttt 293  Q
    || | |||||||||||  |||||||||||||||||||    
T  43105133 aattaatgattgtcttaattttgatgatttttggttt 43105097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 143 - 294
Target Start/End: Original strand, 35104715 - 35104866
Alignment:
Q  143 aaaagacttttctaatcctcatttaatgttggtcttt-caatattagtggatatatttaatacttcacaaatttttatgagagtatatttgtaaaaacat 241  Q
    |||||| |||||||| | ||||||||||||||||||| |||||||||||  |||||||||||| ||| ||| ||||| ||| ||||||||||| ||||||    
T  35104715 aaaagatttttctaaccttcatttaatgttggtcttttcaatattagtgtgtatatttaatacctcaaaaaattttaagagggtatatttgtacaaacat 35104814  T
Q  242 tcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtttc 294  Q
    ||||||||||||||||||| || |||||||||| ||||||||||||| |||||    
T  35104815 tcaaaaaattgcaacaactaataattgtcttgg-tttgatgattttttgtttc 35104866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 293
Target Start/End: Original strand, 30577831 - 30577984
Alignment:
Q  140 tttaaaagacttttctaatcctcatttaatgttggtcttt-caatattagtggatatatttaatacttcacaaatttttatgagagtatatttgtaaaaa 238  Q
    |||||||||| ||||||  ||||||||||||||||||||| ||| |||||| |||||||||||||||||||  ||||||||||  |||||||||||||||    
T  30577831 tttaaaagacgtttctatccctcatttaatgttggtcttttcaacattagtagatatatttaatacttcactcatttttatgatggtatatttgtaaaaa 30577930  T
Q  239 cattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggttt 293  Q
    |||| |||||||| |||||||| || ||| ||||| ||||||||| |||| ||||    
T  30577931 catttaaaaaattacaacaactaat-attatcttgattttgatgaattttagttt 30577984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 94 - 294
Target Start/End: Original strand, 24650120 - 24650322
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtgga 192  Q
    |||||||||||||  |||||| ||||||||||||||||||||| |||| |||| |||||| ||| | || |||||| || ||||||  ||||||||||      
T  24650120 gtcctatttataa--aaaaattacaacttttaaggtatatttattgttaaaaaaacttttttaaccttcttttaatttttgtctttttaatattagtgag 24650217  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatg---attgtcttggttttgatgatttttg 289  Q
     |||||||||| ||||||| ||||||| | |||||||||||||||  ||  ||||||||||||||||| |||   ||||||||||||||||| ||||||     
T  24650218 catatttaatatttcacaattttttataaaagtatatttgtaaaagtataaaaaaaattgcaacaactaatgaatattgtcttggttttgataatttttt 24650317  T
Q  290 gtttc 294  Q
    |||||    
T  24650318 gtttc 24650322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 181 - 294
Target Start/End: Original strand, 49983793 - 49983908
Alignment:
Q  181 aatattagtggatatatttaatacttcacaaatttttatgagagtatatttgt---aaaaacattcaaaaaattgcaacaactgatgattgtcttggttt 277  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||   |||||||||| ||||||| |||  ||| ||||||||||||||||    
T  49983793 aatattagtgggtatatttaatacttcacaaatttttatgagggtatatttgtaaaaaaaacattc-aaaaattacaatcactaatgattgtcttggttt 49983891  T
Q  278 tgatgatttttggtttc 294  Q
    | |||||||||| ||||    
T  49983892 taatgatttttgatttc 49983908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 293
Target Start/End: Original strand, 22923629 - 22923828
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggta---tatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggat 193  Q
    ||||||||||||||| | ||||||| |||| ||   |||||| || ||||| ||| ||||||||| | |||||||  || |||||  ||||||||| | |    
T  22923629 tatttataagaaaaagttacaacttgtaagatactatatttattggttaaaggacatttctaatcataatttaattgtgatctttttaatattagtaggt 22923728  T
Q  194 atatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggttt 293  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||| ||  ||||| || |||||| | |||| | ||||| |||||||||||||| ||||    
T  22923729 atatttaatacatcacaaatttttatgaaggtatatttgtaaaaatatataaaaagttacaacaattaatgactatcttgattttgatgatttttagttt 22923828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 49983561 - 49983638
Alignment:
Q  102 tataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtcttt 179  Q
    ||||||||||| |||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||| ||||||    
T  49983561 tataagaaaaagtcacaacttttaagatacatttattgtttaaaagacttttctaaccctcatttaatgtttgtcttt 49983638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 102 - 248
Target Start/End: Original strand, 41559992 - 41560133
Alignment:
Q  102 tataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatatattta 200  Q
    ||||||||||||||| || ||||||| || |||||   |||||||||||||| |||  ||||||||||||| ||||||| ||||||||||     | ||     
T  41559992 tataagaaaaaatcataatttttaagatacatttatgatttaaaagacttttttaactctcatttaatgtttgtctttctaatattagtg-----agtt- 41560085  T
Q  201 atacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||||    
T  41560086 atacttcacaaatttttatgaaggtatatttataaaaacattcaaaaa 41560133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 43106004 - 43105935
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaa 168  Q
    ||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| ||||||||||    
T  43106004 tatttataagaaaaagtcacaacttttaaggt-tatttattgtttaaaagacttttctaaccctcatttaa 43105935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 248
Target Start/End: Original strand, 35455309 - 35455456
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttcaatattagtggatatat 197  Q
    ||||||||||||||  |||||||||||||||| || ||| || ||||| ||||||||| ||||  ||||||||||  | ||| ||||||||||  | |||    
T  35455309 tatttataagaaaatgtcacaacttttaaggtgtaattattgcttaaatgacttttct-atccctatttaatgtttatatttaaatattagtgagtgtat 35455407  T
Q  198 ttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    |||||  ||||||| |||||||  ||||||||||||| ||| |||||||||    
T  35455408 ttaatgtttcacaattttttat--gagtatatttgtagaaatattcaaaaa 35455456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 288
Target Start/End: Complemental strand, 40345080 - 40344888
Alignment:
Q  95 tcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggat 193  Q
    |||||| ||||||||||  |||||||||||||||| || | | || |||| |||||||| ||  ||||||||||| || ||||||  ||||||||||  |    
T  40345080 tcctatctataagaaaatgtcacaacttttaaggtgtagtcattgcttaagagacttttatacccctcatttaatatttgtctttttaatattagtgagt 40344981  T
Q  194 atatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgattttt 288  Q
    ||  |||||  ||||||| ||||||| || ||||||||||||||| ||||||||| |||||| ||   |||| ||  |||||||||||| |||||    
T  40344980 at--ttaatggttcacaattttttataagggtatatttgtaaaaatattcaaaaagttgcaataatcaatgactgcattggttttgatgtttttt 40344888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 293
Target Start/End: Original strand, 45261361 - 45261558
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtgga 192  Q
    ||||||||||||||||||  |||||||||||||| | || ||| || ||||| ||||||||| ||||  ||||||||||  || ||| |||||||||||     
T  45261361 gtcctatttataagaaaatgtcacaacttttaagctgtagttattgcttaaatgacttttct-atccctatttaatgtttctcttttaaatattagtggg 45261459  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtt 292  Q
    | ||||||||  |||||||  |||| |||| |||||||||||||||  |||||||| || ||  ||   |||| ||  |||||||||||| |||||||||    
T  45261460 tgtatttaatgtttcacaa--ttttttgagggtatatttgtaaaaatgttcaaaaagttacattaatcaatgaatgcattggttttgatgttttttggtt 45261557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 248
Target Start/End: Complemental strand, 17003727 - 17003573
Alignment:
Q  94 gtcctatttataagaaaaaa-tcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttcaa-tattagtgg 191  Q
    ||||||||||||| |||||  |||||||||||||||| || ||| || ||||| ||||||| ||  ||| ||||||||||  ||||| || |||||||||    
T  17003727 gtcctatttataaaaaaaatgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccct-atttaatgtttctcttttaaatattagtgg 17003629  T
Q  192 atatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
     | | ||||||  ||||||| |||||||||| ||||||||||||||| |||||||||    
T  17003628 gtgtgtttaatgtttcacaa-tttttatgagggtatatttgtaaaaatattcaaaaa 17003573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 248
Target Start/End: Complemental strand, 43320280 - 43320133
Alignment:
Q  96 cctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttcaatattagtggatat 195  Q
    ||||||||||||||||  |||||||||||||||| |  ||| |||||||||||||||||||  ||  ||| |||||| ||||||     |||||| || |    
T  43320280 cctatttataagaaaatgtcacaacttttaaggtgtggttattgtttaaaagacttttctagcccctattcaatgtttgtcttt-----ttagtgaatgt 43320186  T
Q  196 atttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    ||||||| |||| | | ||||||| || || |||||||||||| |||||||||    
T  43320185 atttaatgcttcgcgattttttataagggtgtatttgtaaaaatattcaaaaa 43320133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 32211936 - 32211842
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtgg 191  Q
    ||||||||||||||  |||||||||||||||| || ||| |||||||||||||||||||  | | |||||||||| ||| ||| |||||||||||    
T  32211936 tatttataagaaaatttcacaacttttaaggtgtagttattgtttaaaagacttttctacccgttatttaatgtttgtctttttaatattagtgg 32211842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 289
Target Start/End: Complemental strand, 42279287 - 42279191
Alignment:
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttg 289  Q
    ||||||||||| |||| ||||||||||||| ||||||||||||||| ||| ||||| || | |||| | ||||   ||||| |||||||||||||||    
T  42279287 tatatttaatatttcataaatttttatgagggtatatttgtaaaaatattaaaaaagttaccacaattaatgacgatcttgattttgatgatttttg 42279191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 221
Target Start/End: Original strand, 38854614 - 38854739
Alignment:
Q  97 ctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttgg--tctttcaatattagtggata 194  Q
    |||||||||||||||| ||||||||||||| ||||||||| | |||| ||||||||||| | |||| |||||| || |  | ||| ||||| | ||  ||    
T  38854614 ctatttataagaaaaattcacaacttttaaagtatattta-tttttagaagacttttctcaccctcgtttaatttttgttttttttaatatcaatgagta 38854712  T
Q  195 tatttaatacttcacaaatttttatga 221  Q
     ||| ||||||||||||||||||||||    
T  38854713 aattcaatacttcacaaatttttatga 38854739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 248
Target Start/End: Complemental strand, 8825508 - 8825355
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttcaatattagtggat 193  Q
    ||||||||||||||||||  |||||| ||||||||| || ||| || ||||||||||||||||  | ||||||||||    | ||| ||||||| ||  |    
T  8825508 gtcctatttataagaaaatgtcacaa-ttttaaggtgtagttattgcttaaaagacttttctatccttcatttaatgactttattttaatattaatgagt 8825410  T
Q  194 atatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
     |||||||| || ||||| ||||||| || |||||||| |||||| ||| |||||    
T  8825409 gtatttaatgctacacaattttttataagggtatatttataaaaatatttaaaaa 8825355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 289
Target Start/End: Complemental strand, 46918613 - 46918418
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtgga 192  Q
    ||||||||||||||||||  |||||| |||||||| ||| ||| || ||||||||||||| ||  | |||||||||||  ||| ||| ||||||| || |    
T  46918613 gtcctatttataagaaaatgtcacaatttttaagg-atagttattgcttaaaagacttttttatccttcatttaatgtctgtctttttaatattaatgaa 46918515  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttg 289  Q
    | ||||||||  |||| ||  || ||| || |||||||||||||||  || ||||| || |||||| | ||| | |  |||||||||||| ||||||    
T  46918514 tgtatttaatgtttcaaaatattctataagggtatatttgtaaaaatgtttaaaaatttacaacaattaatgttggcattggttttgatgttttttg 46918418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 25295198 - 25295127
Alignment:
Q  99 atttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatg 170  Q
    |||||||||||||  | |||||||||||||| || ||| |||||||||||||||| ||  ||||||||||||    
T  25295198 atttataagaaaatgttacaacttttaaggtgtaattattgtttaaaagacttttttatccctcatttaatg 25295127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 27828544 - 27828599
Alignment:
Q  194 atatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaa 249  Q
    ||||||| || |||||||||||||||||  ||||||||||||||| ||||||||||    
T  27828544 atatttagtatttcacaaatttttatgaaggtatatttgtaaaaatattcaaaaaa 27828599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 49787770 - 49787886
Alignment:
Q  123 ttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggatatatttaatacttcacaaatttttatga 221  Q
    ||||| |||||||| ||||||||| |||||| ||| |||| ||||||||| ||| ||| || |||| ||  ||||||||||| || ||||||||  ||||    
T  49787770 ttaagatatatttattgtttaaaatacttttataaccctcgtttaatgtttgtccttttaaaattaatgagtatatttaatattttacaaatttcaatga 49787869  T
Q  222 gagtatatttgtaaaaa 238  Q
    | || ||||||| ||||    
T  49787870 gggtgtatttgtcaaaa 49787886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 52596686 - 52596618
Alignment:
Q  185 ttagtggatatatttaatacttcacaaattttt-atgagagtatatttgtaaaaacattcaaaaaattg 252  Q
    |||||||||||||  |||||||||||| ||||| ||||  ||||||| ||||||| |||||||||||||    
T  52596686 ttagtggatatatcaaatacttcacaatttttttatgatggtatattcgtaaaaatattcaaaaaattg 52596618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 25294897 - 25294809
Alignment:
Q  205 ttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggttt 293  Q
    ||||||| ||||||||||||||| ||| |||||| ||| ||| | || ||  || | |||||||| ||||| |||||| ||||||||||    
T  25294897 ttcacaattttttatgagagtatgtttataaaaatatttaaatagtttcattaattaatgattgtattggtattgatgttttttggttt 25294809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 50452438 - 50452386
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagact 150  Q
    |||||||||||||| |||| || ||||||||||||  || |||||||||||||    
T  50452438 tatttataagaaaatatcataatttttaaggtataactattgtttaaaagact 50452386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 98 - 294
Target Start/End: Complemental strand, 38979 - 38783
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttcaatattagtggatatat 197  Q
    ||||||||||||||| |||||| ||||||| |||||||| ||||||||| | |||||||  ||| ||| ||||| | | | ||||||||||||||||| |    
T  38979 tatttataagaaaaagtcacaatttttaagatatatttattgtttaaaatatttttctagcccttattgaatgtcgttttatcaatattagtggatatgt 38880  T
Q  198 ttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtttc 294  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||  |||| ||||||||||||    
T  38879 ttaatagttcccaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaagaactaatgattgttttggtcgtgataatttttggtttc 38783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 94 - 288
Target Start/End: Complemental strand, 10599901 - 10599706
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtgga 192  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| ||||| ||| |||||||||| | ||||||||||||  |||||  |||| |||||      
T  10599901 gtcctatttataagaaaaagtcacaacttttgaggtacatttattgtttgaaaaacttttctaaccttcatttaatgtttatctttttaataatagtgtg 10599802  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgattttt 288  Q
    |||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| |||||||||||| || | ||||||||||||||||||||||    
T  10599801 tatatttaatacttcacaaaattttatgagggtatatttgtaaaatcattcaaaacattgcaacaactaatcaatgtcttggttttgatgattttt 10599706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 94 - 286
Target Start/End: Original strand, 14568354 - 14568547
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtgga 192  Q
    ||||||| ||||||||||| |  ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||  || |||||| ||||||||     
T  14568354 gtcctatatataagaaaaagtttcaacttttaagatatatttattgtttaaaagacttttctaaccctcatttaatgtttctcttttcaaaattagtggg 14568453  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgattt 286  Q
    |||||| ||||||||| |||||| ||  |  |||||||||||||||||||||||| ||| ||| |||| |||||||||||||||||||||||||    
T  14568454 tatattgaatacttcaaaaatttataatacggtatatttgtaaaaacattcaaaatattacaataactaatgattgtcttggttttgatgattt 14568547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 102 - 248
Target Start/End: Original strand, 41508105 - 41508252
Alignment:
Q  102 tataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatatattta 200  Q
    |||||||||| ||||||| ||||||||| || ||| || ||||||||||||| ||  ||| |||||||||| ||||||  ||||||||||| | ||||||    
T  41508105 tataagaaaatatcacaatttttaaggtgtagttattgcttaaaagacttttttaccccttatttaatgtttgtctttttaatattagtgggtgtattta 41508204  T
Q  201 atacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    || |||||||| |||||||||| |||||||||||||||||||||||||    
T  41508205 atgcttcacaattttttatgagggtatatttgtaaaaacattcaaaaa 41508252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 10409790 - 10409893
Alignment:
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattc--aaaaaattgcaacaactgatgattgtcttggttttgatgatttttgg 290  Q
    |||||||||||||||||||||||||| ||| |||||||| |||||||||||  ||||||||||||||||| |||||||| |||||||||||||||||| |    
T  10409790 tatatttaatacttcacaaatttttaagagggtatatttataaaaacattcaaaaaaaattgcaacaactaatgattgttttggttttgatgattttttg 10409889  T
Q  291 tttc 294  Q
    ||||    
T  10409890 tttc 10409893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 293
Target Start/End: Complemental strand, 14658921 - 14658727
Alignment:
Q  98 tatttataagaaaaaa-tcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatat 195  Q
    |||||||||||||||| ||| || ||||||||| |||||| | | ||||||||||||  ||||||| |||||||||  |||||  |||| ||||||| ||    
T  14658921 tatttataagaaaaaagtcataa-ttttaaggtgtatttactatgtaaaagactttttcaatcctcgtttaatgtttatctttttaatactagtggaaat 14658823  T
Q  196 atttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggttt 293  Q
    ||||||||||||| |  |||||||||| ||||||||||||||||||| ||||| ||| || |||| |||||| | | |||||||||  ||||||||||    
T  14658822 atttaatacttcatatgtttttatgagggtatatttgtaaaaacatttaaaaagttgtaataactaatgattttataggttttgat--tttttggttt 14658727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 42935454 - 42935552
Alignment:
Q  97 ctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggata 194  Q
    |||||||||||||||| ||||||||||| || || ||||| ||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||||    
T  42935454 ctatttataagaaaaagtcacaacttttgagatacatttattgtttaaaagatttttctaattctcatttaatgttggtcttttcagtattagtggata 42935552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 7307441 - 7307592
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttc-taatcctcatttaatgttggtctttc-aatattagtggatat 195  Q
    ||||||||||||||  ||||||||||||| |  || ||| ||||||||||| ||||  |   ||| |||||| ||| || |||  ||||||||||||| |    
T  7307441 tatttataagaaaatgtcacaacttttaaagagtagttattgtttaaaagattttttatgccccttatttaaggtttgtttttttaatattagtggatgt 7307540  T
Q  196 atttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaa 247  Q
    ||||||| |||||||| |||||||||||||||||||||||||| || |||||    
T  7307541 atttaatgcttcacaattttttatgagagtatatttgtaaaaatatgcaaaa 7307592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 138 - 289
Target Start/End: Complemental strand, 15033410 - 15033262
Alignment:
Q  138 tgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggatatatttaatacttcacaaatttttatgagagtatatttgtaaa 236  Q
    |||||||||||||||| ||   ||| |||||| || ||| ||||||||||||||  |||||| |||| |||| |||||||||| ||||||||||||||||    
T  15033410 tgtttaaaagactttt-tagctctcgtttaatatttgtcttttcaatattagtgagtatattcaataattcataaatttttattagagtatatttgtaaa 15033312  T
Q  237 aacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttg 289  Q
    | ||||||||||   |  |||| |  ||||||||||| |||||||||||||||    
T  15033311 atcattcaaaaa---ggtacaattagtgattgtcttgattttgatgatttttg 15033262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 293
Target Start/End: Complemental strand, 17757448 - 17757336
Alignment:
Q  181 aatattagtggatatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttga 280  Q
    ||||||||||| |||||| |||| ||||||| |||||||||   |||||||||||||||||| ||||| || | |||| | ||||  |||||| |||| |    
T  17757448 aatattagtgggtatattcaataattcacaattttttatgaagatatatttgtaaaaacattaaaaaagttacgacaattaatgacggtcttgattttta 17757349  T
Q  281 tgatttttggttt 293  Q
    |||||||||||||    
T  17757348 tgatttttggttt 17757336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 2195805 - 2195879
Alignment:
Q  97 ctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgt 171  Q
    |||| |||||||||| |||| |||||||||||| || ||| ||||||||||||||||||| || |||||||||||    
T  2195805 ctatatataagaaaatatcataacttttaaggtgtagttattgtttaaaagacttttctactcttcatttaatgt 2195879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 17757558 - 17757477
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtcttt 179  Q
    |||||||||||||||  |||||||||||||||| ||||| || ||||||||| ||| ||| ||| |||||||| ||||||||    
T  17757558 tatttataagaaaaagacacaacttttaaggtacatttattgcttaaaagacatttttaaccctaatttaatggtggtcttt 17757477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 42935834 - 42935911
Alignment:
Q  202 tacttcacaaatttttatgagagtatatttgtaaaaacat-tcaaaaaattgcaacaactgatgattgtcttggtttt 278  Q
    |||||||||| |||||| ||| ||||||||||||||||||   ||||||||||||||||| |||||||||||| ||||    
T  42935834 tacttcacaagtttttaagagggtatatttgtaaaaacatgaaaaaaaattgcaacaactaatgattgtcttgatttt 42935911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 242
Target Start/End: Complemental strand, 14650247 - 14650104
Alignment:
Q  97 ctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaa-tcctcatttaatgttggtc-tttcaatattagtggata 194  Q
    |||||||||||||||  |||||| ||||||| | |||||| ||  |||||||||||| | | |||||||| ||||||  || ||| |||| |||||||||    
T  14650247 ctatttataagaaaatgtcacaatttttaagatgtatttattgcataaaagactttttttagtcctcattcaatgtttatcattttaatactagtggata 14650148  T
Q  195 tatttaatacttcacaaatttttatgagagtatatttgtaaaaacatt 242  Q
    ||||    |||||| ||| ||||| ||| |||||||||||||||||||    
T  14650147 tatt----acttcataaaattttacgagggtatatttgtaaaaacatt 14650104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 13777737 - 13777786
Alignment:
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacatt 242  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||    
T  13777737 tatatttaatacttcacaaatttttatgaacgtatatttataaaaacatt 13777786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 251
Target Start/End: Original strand, 37048576 - 37048735
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtcttt----caatattagtggat 193  Q
    |||||||||||||| |||||||||||||| || || | | |||||||||||||||||||  | | ||||||||||  |||||     | |||||||||      
T  37048576 tatttataagaaaatatcacaacttttaaagtgtagtgattgtttaaaagacttttctaccctttatttaatgtttatctttttaatactattagtgg-g 37048674  T
Q  194 atatttaatacttcacaaatttttatgag---agtatatttgtaaaaacattcaaaaaatt 251  Q
    |||||||||  ||||| ||||||||||||     |||||||||| ||||||||||||||||    
T  37048675 atatttaatggttcacgaatttttatgaggtacatatatttgtataaacattcaaaaaatt 37048735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 45072567 - 45072511
Alignment:
Q  195 tatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaatt 251  Q
    |||||||| |||||||  ||||||||||||||||||| |||||| ||||||||||||    
T  45072567 tatttaatgcttcacagttttttatgagagtatatttataaaaatattcaaaaaatt 45072511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 46101359 - 46101245
Alignment:
Q  98 tatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggatata 196  Q
    ||||||||||||||  ||| |||||||||| | || ||| |  | ||||||||||||||  |||||||||||| | ||| ||| ||||||||||||| ||    
T  46101359 tatttataagaaaatgtcataacttttaagttgtagttattactcaaaagacttttctacccctcatttaatgattgtcattttaatattagtggatgta 46101260  T
Q  197 tttaatacttcacaa 211  Q
     |||||| |||||||    
T  46101259 cttaatatttcacaa 46101245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 12506713 - 12506782
Alignment:
Q  102 tataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgt 171  Q
    |||||||||| || |||||||||||||| || ||| |||| ||||||||||||||  ||| |||||||||    
T  12506713 tataagaaaatattacaacttttaaggtgtagttattgttcaaaagacttttctatcccttatttaatgt 12506782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 248
Target Start/End: Original strand, 20949073 - 20949224
Alignment:
Q  97 ctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatat 195  Q
    |||||||||||||||  ||| |||||||||||| || ||| || ||||| || |||| ||  ||| |||||||||   |||||  |||||||||   | |    
T  20949073 ctatttataagaaaatgtcataacttttaaggtgtagttattgcttaaatgatttttttatccct-atttaatgtctctcttttgaatattagtatgtgt 20949171  T
Q  196 atttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    |||||||  ||||||| |||||||||| ||||||||||||||| ||| |||||    
T  20949172 atttaatgtttcacaattttttatgagggtatatttgtaaaaatatttaaaaa 20949224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 15968471 - 15968546
Alignment:
Q  213 tttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgattttt 288  Q
    ||||||||| ||| || ||||||||||||||||||| ||||||||| | || || |||||  |||||||| |||||    
T  15968471 tttttatgaaagtgtaattgtaaaaacattcaaaaagttgcaacaattaataatcgtcttaattttgatgtttttt 15968546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 46341502 - 46341556
Alignment:
Q  102 tataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttcta 156  Q
    |||||||||| ||||||||||||||||| || ||| || ||||||||||| ||||    
T  46341502 tataagaaaatatcacaacttttaaggtgtagttattgcttaaaagacttctcta 46341556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 12485281 - 12485350
Alignment:
Q  102 tataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgt 171  Q
    ||||| |||| || |||||||||||||| || ||| |||| ||||||||||||||  ||| |||||||||    
T  12485281 tataataaaatattacaacttttaaggtgtagttattgttcaaaagacttttctatcccttatttaatgt 12485350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 18145799 - 18145916
Alignment:
Q  121 ttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggatatatttaatacttcacaaatttttat 219  Q
    |||||| || || ||| ||||||||||| ||||||| |  |||||||||| |  || ||| ||||||||||||| ||||||||| || |||| ||| |||    
T  18145799 ttttaaagtgtaattattgtttaaaagatttttctacttttcatttaatgattatcattttaatattagtggatgtatttaatattttacaactttctat 18145898  T
Q  220 gagagtatatttgtaaaa 237  Q
      | ||||||||||||||    
T  18145899 acgggtatatttgtaaaa 18145916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 20022114 - 20022046
Alignment:
Q  213 tttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgat 281  Q
    ||||||||| || |||||||||||| |||| ||||| || |||||  | ||||||||||| ||||||||    
T  20022114 tttttatgatagaatatttgtaaaagcatttaaaaagttacaacagttaatgattgtcttagttttgat 20022046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 35333328 - 35333405
Alignment:
Q  142 taaaagacttttctaatcctcatttaatgttggtctttcaatattagtggatatatttaatacttcacaaatttttatga 221  Q
    ||||||| |||| ||| |||||||||||||| ||||||   || || || ||||||||||||||| | ||||||||||||    
T  35333328 taaaagatttttttaaccctcatttaatgtttgtcttt--ttaatattgaatatatttaatactttataaatttttatga 35333405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 105 - 294
Target Start/End: Original strand, 131735 - 131927
Alignment:
Q  105 aagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatatatttaat- 202  Q
    |||||||| |||||||||| |||||  ||||| |||| ||||||||||||||| | ||| | || ||| ||||||  ||||||||||| ||||||||||     
T  131735 aagaaaaagtcacaacttt-aaggtgcatttattgttcaaaagacttttctaaccttcaataaaagtttgtctttttaatattagtggttatatttaata 131833  T
Q  203 --acttcacaaatttttatgagagtatatttgt-aaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtttc 294  Q
      |||||||||||||||||||| |||||||||| |||||||||| ||||||| |||  ||| ||||||||||| |||||||||||||||| ||||    
T  131834 atacttcacaaatttttatgagggtatatttgtaaaaaacattc-aaaaattacaattactaatgattgtcttcgttttgatgatttttgctttc 131927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 289
Target Start/End: Complemental strand, 648 - 452
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtgga 192  Q
    |||||| |||||||||||| ||||||| |||||||| || ||| |||||||||||||||| ||  |||||||||||| | ||| ||| ||||||||||||    
T  648 gtcctaattataagaaaaagtcacaacatttaaggtgtagttattgtttaaaagacttttttatccctcatttaatgattgtcgttttaatattagtgga 549  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttg 289  Q
    |  |||||||  |||||||  || ||| || |||||||||||||||  || ||||| || |||||| | ||||| || ||||| |||||| ||||||    
T  548 tccatttaatgtttcacaacattctataagggtatatttgtaaaaatctttaaaaagttacaacaattaatgatggtattggtattgatgttttttg 452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 293
Target Start/End: Original strand, 17686233 - 17686427
Alignment:
Q  98 tatttataagaaaaaa-tcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttcaatattagtggatata 196  Q
    |||||||||||||||| ||| |||||||||||| |||||| | | ||||||||||||  ||||||| |||||||||    ||| |||| ||||||| | |    
T  17686233 tatttataagaaaaaagtcataacttttaaggtgtatttactatataaaagactttttcaatcctcctttaatgttatctttttaatactagtggaaaca 17686332  T
Q  197 tttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggttt 293  Q
    |||||||||||| |  |||||||||  ||||| ||||||||||||| ||||  ||| || |||| |||||| | | |||||||||  ||||||||||    
T  17686333 tttaatacttcatatgtttttatgaaggtatacttgtaaaaacatttaaaacgttgtaataactaatgattttataggttttgat--tttttggttt 17686427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 248
Target Start/End: Complemental strand, 11983709 - 11983578
Alignment:
Q  117 caacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggatatatttaatacttcacaaattt 215  Q
    ||||||||||||| || ||| ||||||||||| |||| ||  ||||||||||||||  || ||| ||||||||||||| ||||||||  ||||| |||||    
T  11983709 caacttttaaggtgtaattattgtttaaaagatttttttacccctcatttaatgtttctctttttaatattagtggatgtatttaatgtttcac-aattt 11983611  T
Q  216 ttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    |||  |||||||||||||||||  |||||||||    
T  11983610 ttacaagagtatatttgtaaaagtattcaaaaa 11983578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 202
Target Start/End: Complemental strand, 3257354 - 3257251
Alignment:
Q  100 tttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggatatatt 198  Q
    |||||||||||| ||||||||||||||||  ||  || |||||||||||||||||||   || |||||||||| ||| ||| ||||||||||||||||||    
T  3257354 tttataagaaaatatcacaacttttaaggcgtaactattgtttaaaagacttttctatctcttatttaatgtttgtctttttaatattagtggatatatt 3257255  T
Q  199 taat 202  Q
    ||||    
T  3257254 taat 3257251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 6688792 - 6688928
Alignment:
Q  102 tataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcattta--atgttggtctttca-atattagtggatatatt 198  Q
    |||||||||| ||||||||||||||||| || ||| |||||||||||||||||||  ||| |||||  ||||| || ||| | ||||||||   | ||||    
T  6688792 tataagaaaatatcacaacttttaaggtgtagttattgtttaaaagacttttctatcccttatttaatatgtttgtttttaatatattagtaagtgtatt 6688891  T
Q  199 taatacttcacaaatttttatgagagtatatttgtaa 235  Q
    |||| ||| |||| |||||||||| ||||||||||||    
T  6688892 taatgctttacaattttttatgagggtatatttgtaa 6688928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 293
Target Start/End: Original strand, 18705003 - 18705196
Alignment:
Q  101 ttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatatattt 199  Q
    ||||||||||| |||| |||||||||||| || ||| |  ||||||||||||| ||  | | ||||||||||  | |||  ||||||| | | | |||||    
T  18705003 ttataagaaaacatcataacttttaaggtgtagttattacttaaaagacttttttaccctttatttaatgtttttgtttttaatattaataggtgtattt 18705102  T
Q  200 aatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggttt 293  Q
    ||| |||||||| ||||||| ||  |||||||||||||| ||||||||| || ||  || | ||  |||| ||||||| |||| ||||||||||    
T  18705103 aatgcttcacaactttttataaggatatatttgtaaaaatattcaaaaagttacactaattaatagttgtattggtttcgatgttttttggttt 18705196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 293
Target Start/End: Original strand, 2225586 - 2225777
Alignment:
Q  103 ataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtctttc-aatattagtggatatatttaa 201  Q
    ||||||||| |||||||| ||||||||    | | |||||||||||||||||||    | ||||||||||  | |||  ||||||||||| | |||||||    
T  2225586 ataagaaaacatcacaacatttaaggtgacatgattgtttaaaagacttttctaccatttatttaatgtttttgtttttaatattagtggttgtatttaa 2225685  T
Q  202 tacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggttt 293  Q
    |  ||||||| |||||||||  ||||||||||||||| |||  |||| || ||  || | || ||||| || ||||||||| ||||||||||    
T  2225686 tgtttcacaactttttatgaaggtatatttgtaaaaatatttcaaaagttacactaattaataattgtattagttttgatgttttttggttt 2225777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 27193009 - 27193084
Alignment:
Q  95 tcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatg 170  Q
    ||||||||||||| |||  |||||||||||||| |||| ||| |||||||||||||||| ||  | ||||||||||    
T  27193009 tcctatttataaggaaatgtcacaacttttaagatatagttattgtttaaaagacttttttatccttcatttaatg 27193084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 242
Target Start/End: Original strand, 17693562 - 17693705
Alignment:
Q  97 ctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttt-tctaatcctcatttaatgttggtc-tttcaatattagtggata 194  Q
    |||||||||||||||  |||||| ||||||| | |||||| |   ||||||||||| | || |||||||| ||||||  || ||| |||| |||||||||    
T  17693562 ctatttataagaaaatgtcacaatttttaagatgtatttattacataaaagactttctttagtcctcattcaatgtttatcattttaatactagtggata 17693661  T
Q  195 tatttaatacttcacaaatttttatgagagtatatttgtaaaaacatt 242  Q
    ||||    |||||| ||| ||||| ||| |||||||||||||||||||    
T  17693662 tatt----acttcataaaattttacgagggtatatttgtaaaaacatt 17693705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 19296288 - 19296165
Alignment:
Q  114 tcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggatatatttaatacttcacaaa 212  Q
    ||||||||||||| || || ||| || ||||||||||||||| ||||  ||||||||||  || ||| |||||||| |||| | ||||||| || || ||    
T  19296288 tcacaacttttaaagtgtagttattgcttaaaagacttttct-atccatatttaatgtttctcattttaatattagcggatgtgtttaatattttac-aa 19296191  T
Q  213 tttttatgagagtatatttgtaaaaa 238  Q
    |||||||||| |||||| ||||||||    
T  19296190 tttttatgagggtatatatgtaaaaa 19296165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 293
Target Start/End: Complemental strand, 3629360 - 3629160
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatg-ttggtctttcaatattagtgga 192  Q
    |||| |||||||||||||  |||||||||||||||| || ||| |  ||||||||||||| ||  ||| ||||||||  ||   ||| |||||||||| |    
T  3629360 gtccaatttataagaaaatgtcacaacttttaaggtgtagttattacttaaaagacttttgtatccctaatttaatgactgtatttttaatattagtgaa 3629261  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtt 292  Q
    | ||||||||  |||||||  || ||| ||  ||||||||||||||  || ||||| || |||||| | || ||    |||||||||||| |||||||||    
T  3629260 tgtatttaatgtttcacaacattctataaggttatatttgtaaaaatgtttaaaaagttacaacaattaattataacattggttttgatgttttttggtt 3629161  T
Q  293 t 293  Q
    |    
T  3629160 t 3629160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 1963013 - 1962962
Alignment:
Q  91 ttagtcctatttataagaaaaaatcacaacttttaaggtatatttagtgttt 142  Q
    |||||||||||||||||||||| | |||||||||||  |||||||| |||||    
T  1963013 ttagtcctatttataagaaaaagtgacaacttttaaaatatatttattgttt 1962962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 33432873 - 33432787
Alignment:
Q  201 atacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgattttt 288  Q
    |||| |||||||||| |||||  ||||||| |||| || ||| |||||||| |||||| | |||||||||||| |||||||| |||||    
T  33432873 atacatcacaaatttctatgaaggtatattcgtaagaatatt-aaaaaattacaacaattaatgattgtcttgattttgatgtttttt 33432787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 39569147 - 39569202
Alignment:
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 248  Q
    |||||| |||| || |||||||||||||  | ||||||||||||||||||||||||    
T  39569147 tatattaaatatttgacaaatttttatgtaaatatatttgtaaaaacattcaaaaa 39569202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 14417941 - 14418009
Alignment:
Q  181 aatattagtggatatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaa 249  Q
    ||||||||||| | |||||||| |||||||| |||||||||  ||| |||||||| || ||| ||||||    
T  14417941 aatattagtgggtgtatttaatgcttcacaattttttatgaaggtaaatttgtaagaatattaaaaaaa 14418009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 278
Target Start/End: Complemental strand, 19090303 - 19090208
Alignment:
Q  182 atattagtggatatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggtttt 278  Q
    |||||| |||||||||| || | ||||||||||| | ||||  ||||||| |||||| ||| |||||||| |||||| | ||||| |||||| ||||    
T  19090303 atattaatggatatattaaa-atttcacaaatttctttgaggatatatttataaaaatattaaaaaaattacaacaattaatgatcgtcttgatttt 19090208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 293
Target Start/End: Original strand, 154340 - 154537
Alignment:
Q  97 ctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggatat 195  Q
    ||||||||||||||| || |||||||||||||| || ||| |||||||||||| ||| ||    | |||||||||| ||| ||| |||||| |||| | |    
T  154340 ctatttataagaaaatattacaacttttaaggtgtagttattgtttaaaagacctttttaccttttatttaatgtttgtctttttaatattggtgggtgt 154439  T
Q  196 atttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggttt 293  Q
    ||||||| |||||||  |||||||||| | || |||||||||| |||||| || || ||  || | |||| ||| |||||||||||| ||||| ||||    
T  154440 atttaatgcttcacagttttttatgagggcatgtttgtaaaaatattcaacaagttacactaattaatgagtgtattggttttgatgtttttttgttt 154537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 293
Target Start/End: Original strand, 3019 - 3219
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtgga 192  Q
    ||||||||||||||||||  |||||||||||||||| || ||| |||||||||||||||||||  ||||||| |||  |  || ||| ||||||||||||    
T  3019 gtcctatttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttctatccctcattcaataattctctttttaatattagtgga 3118  T
Q  193 tatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaacaactgatgattgtcttggttttgatgatttttggtt 292  Q
    | ||||||||  |||||||  || ||| || | || ||||||||||  || |||||  | ||| || | ||||  || |||||||||||| |||||||||    
T  3119 tgtatttaatgtttcacaacattctataagggcatgtttgtaaaaatgtttaaaaaggtacaagaattaatgacagtattggttttgatgttttttggtt 3218  T
Q  293 t 293  Q
    |    
T  3219 t 3219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 247
Target Start/End: Original strand, 51273 - 51424
Alignment:
Q  97 ctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtggatat 195  Q
    ||||||||||| |||  |||||||||||||||| |||||| || |||||||| |||| ||  |||||||||||  |  || ||| ||| ||||| | | |    
T  51273 ctatttataagtaaatgtcacaacttttaaggtgtatttattgcttaaaagatttttttatccctcatttaataattctctttttaattttagttggtgt 51372  T
Q  196 atttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaa 247  Q
    |||||||  ||||||| |||||||||| ||||| ||||||||| ||||||||    
T  51373 atttaatgtttcacaactttttatgagggtataattgtaaaaatattcaaaa 51424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 68798 - 68895
Alignment:
Q  94 gtcctatttataagaaaaaatcacaacttttaaggtatatttagtgtttaaaagacttttctaatcctcatttaatgttggtc-tttcaatattagtgga 192  Q
    |||||||||||||||||||| || |  ||||||||| || ||| |  ||||||||||||| || ||||||||||||||| ||| ||| ||||||||||||    
T  68798 gtcctatttataagaaaaaagca-actttttaaggtgtagttatt--ttaaaagacttttttattcctcatttaatgtttgtcgttttaatattagtgga 68894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University