View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11855_high_28 (Length: 241)
Name: NF11855_high_28
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 8309440 - 8309664
Alignment:
| Q |
1 |
ttaaatattcaatttcctaacctaaggctgaaggagctgcactacacattcacattgttttagtcatattttcagtacactatttttctatatagatcca |
100 |
Q |
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| T |
8309440 |
ttaaatattcaatttcctaacctaaggctgaaggagctgcactacacattcatattgttttagtcatattttcagtacactatttttctatatagatcca |
8309539 |
T |
|
| Q |
101 |
tctctaattacacccaaatgttgctttcctcccacctagttaacttttctccaatcaaaggaaatcggagtttgcttgtcctgattgtaagattcgttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8309540 |
tctctaattacacccaaatgttgctttcctcccacctagttaacttttctccaatcaaaggaaatcggagtttgcttgtcctgattgtaagaatcgttat |
8309639 |
T |
|
| Q |
201 |
ctttgaacacaaacaatataacatg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
8309640 |
ctttgaacacaaacaatataacatg |
8309664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 8299933 - 8300056
Alignment:
| Q |
1 |
ttaaatattcaatttcctaacctaaggc--tgaaggagctgcactacacattcacattgttttagtcatattttcagtacactatttttctatatagatc |
98 |
Q |
| |
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||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
8299933 |
ttaaatattcaatttcctaacctaacgtcttgaaggagctgcactacacattcatattgttttagtcatattttcagtacacta-ttttctagatagatc |
8300031 |
T |
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| Q |
99 |
catctctaattacacccaaatgttg |
123 |
Q |
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||||| ||||||||| ||||||||| |
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| T |
8300032 |
catctttaattacacacaaatgttg |
8300056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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