View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11855_high_4 (Length: 807)
Name: NF11855_high_4
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 234 - 789
Target Start/End: Complemental strand, 51734358 - 51733803
Alignment:
| Q |
234 |
tcattattttgcataacaaattacacttacgttaaccatccagtgttgctgaaagtatgaaagacaagannnnnnncattctcctcttctaaccaatccc |
333 |
Q |
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| T |
51734358 |
tcattattttgcataacaaattacacttacgttaaccatccagtgttgctgaaagtatgaaagacaagatttttttcattctcctcttctaaccaatccc |
51734259 |
T |
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| Q |
334 |
ccaagtggtccacaagcatgtgaacattttgttcggcttttcctccaggctgataactcaacacatccgccattggaaacgtaaatgtaatgacatgaaa |
433 |
Q |
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| T |
51734258 |
ccaagtggtccacaagcatgtgaacattttgttcggcttttcctccaggctgataactcaacacatccgccattggaaacgtaaatgtaatgacatgaaa |
51734159 |
T |
|
| Q |
434 |
tccttttgaagtataccattctgcatacttctttaaatgattctgctttgcacctaaccatccaagcaaaaccaccaccgtcttggaagacttcatggat |
533 |
Q |
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| T |
51734158 |
tccttttgaagtataccattctgcatacttctttaaatgattctgctttgcacctaaccatccaagcaaaaccaccaccgtcttcaaagacttcatggat |
51734059 |
T |
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| Q |
534 |
gaaccacaaaaaacatttggttcaggcaaatgccatttatacataacttcagaagttgaattagagacaccattagagcaagtggatgacgatgatgatg |
633 |
Q |
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| T |
51734058 |
gaaccacaaaaaacatttggttcaggcaaatgccatttatacataacttcagaagttgaattagagacaccattagagcaagtggaggacgatgatgatg |
51733959 |
T |
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| Q |
634 |
gcattgaaaacctagtcaattcagctgaatgatacaaattccgaacaagtggtgatgaaacaacggaagaatagtacaaatttgaccccaaaaccggcac |
733 |
Q |
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| T |
51733958 |
gcattgaaaacctagtcaattcagctgaataatacaaattccgaacaagtggtgatgaaacaacggaagaatagtacaaatttgaccccaaaaccggcac |
51733859 |
T |
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| Q |
734 |
gcggaatttgaaattaggtacaggaacacgaattttggttacaaaagataggttag |
789 |
Q |
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| T |
51733858 |
gaggaatttgacattaggtacaggaacacgaattttggttacaaaagataggttag |
51733803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 51734596 - 51734422
Alignment:
| Q |
1 |
atgaaaaacaaatggctg-----accaagtcttaaaattgctaaagcctttacctgtgggtcagggtttgcaacaggtgcagaatctacaatgcagcccc |
95 |
Q |
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| T |
51734596 |
atgaaaaacaaatggctgtgttcaccaagtcttaaaattgctaaagcctttacctgtgggtcagggtttgcaacaggtgcagaatctacaatgcagcccc |
51734497 |
T |
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| Q |
96 |
taatcttttccatcaaagacgggtcttgcctttgaaaatgctccaacataacaccatacctgaaacatgcaatct |
170 |
Q |
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| T |
51734496 |
taatcttttccatcaaagacgggtcttgcctttgaaaatgctccaacataacaccatacctgaaacatgcaatct |
51734422 |
T |
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Back To:
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