View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11855_high_9 (Length: 538)
Name: NF11855_high_9
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 75 - 530
Target Start/End: Complemental strand, 3262966 - 3262511
Alignment:
| Q |
75 |
aacacgtggacacagatggaaattgaatataatcacaaggactcagacacatgtcgaacaccggaattgccaatagagaagagaaaaggaataactcact |
174 |
Q |
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| T |
3262966 |
aacacgtggacacagatggaaattgaatataatcacaaggactcagacacatgtcgaacaccggaattgccaatagagaagagaaaaggaacaactcacg |
3262867 |
T |
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| Q |
175 |
gtgttttgggctaaaccaagctgaataacaccatcaggattatgaatccgatgataaggattatctgcgactttgtttaaacctaagtaataaggagagt |
274 |
Q |
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| T |
3262866 |
gtgttttgggctaaaccaagctgaataacaccatcaggattatgaatccgatgataaggattatctgcgactttgtttaaacctacgtaataaggagagt |
3262767 |
T |
|
| Q |
275 |
ttgttgtgattatggaattgacccgacccgaaatattagcggaggcggttgaacctctgattcgaggtgagagagtgcgtgacaaggcgggaagctccgg |
374 |
Q |
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| T |
3262766 |
ttgttgtgattatggaattgacccgacccgaaatattagcggaggcggttgaacctctgatccgaggtgagagagtgcgtgacaaggcgggaagctccgg |
3262667 |
T |
|
| Q |
375 |
aggcggaaggttgttagaaggaggagattggcggttacgtgtcttaaaataaagctgaagaaagtagaaaagagcgcaaggaataactgaaccccaaaaa |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3262666 |
aggcggaaggttgttagaaggaggagattggcggttacgtgtcttaaaataaagctgaagaaagtagaaaagagcgcaaggaataactgaaccccaaaaa |
3262567 |
T |
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| Q |
475 |
agaccccctgttccttgaacaactccttgcaaaggcactattattttcatctcatt |
530 |
Q |
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| T |
3262566 |
agaccccctgttccttgaacaactccttgcaaaggcactattattttcatctcatt |
3262511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 3263058 - 3262996
Alignment:
| Q |
17 |
aacaagaacagtcacaaatgcaattgtagcttcgaaaataacataagagaagccataaaacac |
79 |
Q |
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| T |
3263058 |
aacaagaacagtcacaaatgcaattgtagcttcgaaaataacataagagaagccataaaacac |
3262996 |
T |
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