View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11855_low_11 (Length: 522)
Name: NF11855_low_11
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 95 - 504
Target Start/End: Complemental strand, 43519087 - 43518681
Alignment:
| Q |
95 |
gaatattgcgtaaaagacaaatgatctatggatggtcttaatttacccattttagccaattatggatagattcaaaatagcaaaaaactatataaggtct |
194 |
Q |
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| T |
43519087 |
gaatattgcgtaaaagacaaatgatctatggatggtcttaatttacccattttagccaattatggatagattcaaaatagcaaaaa-------------- |
43519002 |
T |
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| Q |
195 |
gtatcactataaaaggtttgttttttccttctgatttggcatcaattagatttttcatgattaaaatagataacaaacaatcaaatagattcttttgttg |
294 |
Q |
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| T |
43519001 |
------ctatataaggtttgttttttccttctgatttggcatcaattagatttttcatgattaaaatagataacaaacaatcaaatagattcttgtgttg |
43518908 |
T |
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| Q |
295 |
tgaatatggtcccttcctcttcccatataaatcac-----------------tagatactcggtcattcttttccgtcttattctttcatcatatcattt |
377 |
Q |
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| T |
43518907 |
tgaatatggtcccttcctcttcccatataaatcaccaattaccaacaatcactagatactcggtcattcttttccgtcttattctttcatcatatcattt |
43518808 |
T |
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| Q |
378 |
tcttgcatatgcaaaatgattcttcctctctttaagtcttccaaatctcacctacctattcccatgnnnnnnncttggatgacacgtaatgtttacattc |
477 |
Q |
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| T |
43518807 |
tcttgcatatgcaaaatgattcttcctctctttaagtcttccaaatctcacctacccattcccatgtttttttcttggatgacacgtaatgtttacattc |
43518708 |
T |
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| Q |
478 |
atatatctatataacacaattcaaatt |
504 |
Q |
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| T |
43518707 |
atatatccatataacacaattcaaatt |
43518681 |
T |
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