View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11855_low_12 (Length: 512)

Name: NF11855_low_12
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11855_low_12
NF11855_low_12
[»] chr1 (1 HSPs)
chr1 (19-512)||(50788350-50788841)


Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 512
Target Start/End: Original strand, 50788350 - 50788841
Alignment:
Q  19 atttgcccacaccgtactaacaaatattgaaacatgacaaaccaaaccataccaaaaccatacaatcttaatcaaatcaatttctattactatgaaatgt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50788350 atttgcccacaccgtactaacaaatattgaaacatgacaaaccaaaccataccaaaaccatacaatcttaatcaaatcaatttctattgctatgaaatgt 50788449  T
Q  119 nnnnnnnnnnnntgtatttattaccaacccaattcactagataatgaagaaagcatcttagtctttttcccttctatagtcacttgaagaatctaacata 218  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50788450 aaaaataaaaaatgtatttattaccaacccaattcactagataatgaagaaagcatcttagtctttttcccttctatagtcacttgaagaatctaacata 50788549  T
Q  219 aataaaatgccctaaaccaaaccaaacaacatcacatttgttcttcccttttggtgtttataaaatgtttgnnnnnnntaactgtttgacaaaaatggta 318  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  50788550 aataaaatgccctaaaccaaaccaaacaacgtcacatttgttcttcccttttggtgtttataaaatgtttgaaaaaaataactgtttgacaaaaatggta 50788649  T
Q  319 acatgaggtcaacattacatgtatgtannnnnnnnaacactattgtaagtgacagaatgaccttattgcggtctattctatcgagattcagctcttgata 418  Q
    |||||| ||||| ||||||||||||||        |||||||||||||||||||||||||||||||| |  ||||||||| |||||||||||||||||||    
T  50788650 acatgacgtcaatattacatgtatgtattttttttaacactattgtaagtgacagaatgaccttattacaatctattctaccgagattcagctcttgata 50788749  T
Q  419 cttcgattcgacattattaacaaaacatannnnnnnnnnnncgaaggtaattgaattgaattgttatatgttacctggagaagagagtgccaca 512  Q
    ||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50788750 cttcgattcgacattattaacaaaacat--gtgtgtgtgtgtgaaggtaattgaattgaattgttatatgttacctggagaagagagtgccaca 50788841  T

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