View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11855_low_14 (Length: 448)

Name: NF11855_low_14
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11855_low_14
NF11855_low_14
[»] chr4 (5 HSPs)
chr4 (25-436)||(15554946-15555357)
chr4 (139-401)||(37147403-37147664)
chr4 (111-383)||(35160481-35160753)
chr4 (183-383)||(35154162-35154362)
chr4 (113-161)||(16298996-16299044)
[»] chr8 (4 HSPs)
chr8 (106-386)||(9677513-9677793)
chr8 (105-383)||(9693257-9693535)
chr8 (338-415)||(21465787-21465864)
chr8 (113-161)||(30652024-30652072)
[»] chr3 (14 HSPs)
chr3 (65-386)||(46478206-46478527)
chr3 (66-383)||(46469607-46469924)
chr3 (140-265)||(46507118-46507246)
chr3 (135-383)||(46490018-46490266)
chr3 (180-383)||(47398194-47398397)
chr3 (147-386)||(45900894-45901133)
chr3 (136-383)||(5155255-5155502)
chr3 (180-311)||(46497380-46497511)
chr3 (195-383)||(47414838-47415026)
chr3 (319-382)||(46550160-46550223)
chr3 (83-236)||(16023881-16024034)
chr3 (303-386)||(4582375-4582458)
chr3 (99-235)||(4582526-4582662)
chr3 (127-175)||(46527717-46527765)
[»] chr2 (5 HSPs)
chr2 (323-383)||(20143684-20143744)
chr2 (323-383)||(20169766-20169826)
chr2 (126-275)||(20143496-20143645)
chr2 (105-236)||(20154380-20154511)
chr2 (126-262)||(20169878-20170014)
[»] chr6 (1 HSPs)
chr6 (113-264)||(16967863-16968014)
[»] chr7 (4 HSPs)
chr7 (306-383)||(17734673-17734750)
chr7 (338-382)||(16729594-16729638)
chr7 (338-382)||(17706666-17706710)
chr7 (338-382)||(17716654-17716698)
[»] chr1 (1 HSPs)
chr1 (113-161)||(33097480-33097528)


Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 25 - 436
Target Start/End: Original strand, 15554946 - 15555357
Alignment:
Q  25 gttgttgctttcgttaagaagaagaaagaatggagttccgtcgtgaatcaatgatcacccaaaccaacgtatcactcaaaatcgctaaacatctcttctc 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15554946 gttgttgctttcgttaagaagaagaaagaatggagttccgtcgtgaatcaatgatcacccaaaccaacgtttcactcaaaatcgctaaacatctcttctc 15555045  T
Q  125 taaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgcttccggctctgagggttccacacagcaacaactt 224  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  15555046 taaacaacccaacaacaacattgtgttttcacctctctcgattcaagttattctcagcatcatcgctgctggctctgagggttccacacagcaacaactt 15555145  T
Q  225 ctcgacttcctcggcttcaaatccatccatcaactcaactccgtcatctctcgcctcatttccgtcatcctcaaagacgctgctccctccggtgggcctc 324  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||     
T  15555146 ctcgacttcctccgctttaaatccatccatcaactcaactccgtcatctctcgcctcgtttccgtcatcctcaaagacgctgctccctccggcgggcctt 15555245  T
Q  325 gcctctctgtcgccaatggtgtgtgggttgaacaaaccctttctcttcaaacttccttccaaaagattgtttcttctgatttccaagccaagttggcttc 424  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15555246 gcctctctgtcgccaatggtgtgtgggttgagcaaaccctttctcttcaaacttccttccaaaagattgtttcttctgatttccaagccaagttggcttc 15555345  T
Q  425 cgttgatgtcca 436  Q
    ||||||| ||||    
T  15555346 cgttgatttcca 15555357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 139 - 401
Target Start/End: Original strand, 37147403 - 37147664
Alignment:
Q  139 acaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgcttccggctctgagggttccacacagcaacaacttctcgacttcctcgg 238  Q
    |||||||||||||||| ||  | ||| | |||||| |||| || || |||||| | |||||  ||||| ||||||| |||||| |||||||||||||||     
T  37147403 acaacattgtgttttcgcccttgtcgctccaagttgttctaagtattatcgctgctggctccaagggtcccacacaacaacaaattctcgacttcctcga 37147502  T
Q  239 cttcaaatccatccatcaactcaactccgtcatctctcgcctcatttccgtcatcctcaaagacgctgctccctccggtgggcctcgcctctctgtcgcc 338  Q
    ||| ||||||||| ||||  ||||||   || | ||||  ||  ||||| |||||||||||||||||||||| | |||  |||||||||| ||||| |||    
T  37147503 ctttaaatccatcaatcatgtcaacttattcgtttctcagcttgtttccatcatcctcaaagacgctgctcc-tgcgggcggcctcgcctttctgtagcc 37147601  T
Q  339 aatggtgtgtgggttgaacaaaccctttctcttcaaacttccttccaaaagattgtttcttct 401  Q
    |||||||||||| |||||||| | ||||||||||||  ||||||| || | ||||| ||||||    
T  37147602 aatggtgtgtggattgaacaatcactttctcttcaacattccttcaaacaaattgtgtcttct 37147664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 383
Target Start/End: Original strand, 35160481 - 35160753
Alignment:
Q  111 aaacatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgcttccggctctgagggttcca 210  Q
    |||||||||||||| ||| ||||  | || ||||| |||||||| ||| | ||  | |||||| | |||||||| ||| || | |||||||||||||| |    
T  35160481 aaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcactgctggctctgagggttcaa 35160580  T
Q  211 cacagcaacaacttctcgacttcctcggcttcaaatccatccatcaactcaactccgtca-tctctcgcctcatttccgtcatcctcaaagacgctgctc 309  Q
    |||| ||||| ||||| ||||||||| | ||||||||||   |||| ||||||||| ||| ||||||  |   ||||| ||||||||||||||||| ||     
T  35160581 cacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaactcc-tcagtctctcatcaactttccatcatcctcaaagacgctactt 35160679  T
Q  310 cctccggtgggcctcgcctctctgtcgccaatggtgtgtgggttgaacaaaccctttctcttcaaacttccttc 383  Q
    | |||||||| |||| ||||||| ||| | | ||||| ||| | ||| ||||||||||||||||| ||||||||    
T  35160680 cttccggtggtcctcacctctctttcgtcgacggtgtttggctggaaaaaaccctttctcttcaatcttccttc 35160753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 183 - 383
Target Start/End: Original strand, 35154162 - 35154362
Alignment:
Q  183 atcatcgcttccggctctgagggttccacacagcaacaacttctcgacttcctcggcttcaaatccatccatcaactcaactccgtcatctctcgcctca 282  Q
    ||||||||| | |||||||| ||||||||||  ||||| |||||| ||||||||   |||||||||  | |||| ||||||||| || ||||||  ||||    
T  35154162 atcatcgctgctggctctgacggttccacacgacaacagcttctcaacttcctccaattcaaatccgcctatcatctcaactccttcgtctctcaactca 35154261  T
Q  283 tttccgtcatcctcaaagacgctgctccctccggtgggcctcgcctctctgtcgccaatggtgtgtgggttgaacaaaccctttctcttcaaacttcctt 382  Q
    ||||||||||| ||||||||||| |||| ||   ||| |||||||||| | | | |||| |||||||| | ||  |||||||||||| |||| |||||||    
T  35154262 tttccgtcatcttcaaagacgctactccttctcatggtcctcgcctcttttttgtcaatagtgtgtggctggacaaaaccctttctcctcaaccttcctt 35154361  T
Q  383 c 383  Q
    |    
T  35154362 c 35154362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 16298996 - 16299044
Alignment:
Q  113 acatctcttctctaaacaatccaacaacaacattgtgttttcaccactc 161  Q
    |||||||||||| ||| ||||  |||||||||| |||||||||||||||    
T  16298996 acatctcttctccaaagaatcagacaacaacatcgtgttttcaccactc 16299044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 7e-50; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 106 - 386
Target Start/End: Complemental strand, 9677793 - 9677513
Alignment:
Q  106 tcgctaaacatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgcttccggctctgaggg 205  Q
    |||| |||||||||||||| ||| ||||  |||||||| | || ||||||||| | ||  | |||||| ||||||| ||||||||| | |||||||||||    
T  9677793 tcgccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgctggctctgaggg 9677694  T
Q  206 ttccacacagcaacaacttctcgacttcctcggcttcaaatccatccatcaactcaactccgtcatctctcgcctcatttccgtcatcctcaaagacgct 305  Q
    | | || || ||||| ||||||||||||||| | |||||||||||| |||| ||||||||| || ||||||  ||| |||| ||| |||||||||| ||     
T  9677693 tcctactcaacaacagcttctcgacttcctccgtttcaaatccatcgatcatctcaactccttcgtctctcatctcctttctgtcctcctcaaagatgca 9677594  T
Q  306 gctccctccggtgggcctcgcctctctgtcgccaatggtgtgtgggttgaacaaaccctttctcttcaaacttccttccaa 386  Q
    ||| | |||||||| |||||||||||| ||||||||||||| ||||| ||  ||| ||||||||||||| |||||||||||    
T  9677593 gcttcttccggtggtcctcgcctctctttcgccaatggtgtatgggtggagaaaaacctttctcttcaaccttccttccaa 9677513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 383
Target Start/End: Complemental strand, 9693535 - 9693257
Alignment:
Q  105 atcgctaaacatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgcttccggctctgagg 204  Q
    ||||| |||||||||||||| ||| ||||  |||| ||  | || ||||||||| | ||  | |||||| |||||||||||||||||   |||||||| |    
T  9693535 atcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccattgtctctccaagttgttctcagcatcatcgctgttggctctgacg 9693436  T
Q  205 gttccacacagcaacaacttctcgacttcctcggcttcaaatccatccatcaactcaactccgtcatctctcgcctcatttccgtcatcctcaaagacgc 304  Q
    || | || || ||||| ||||| ||||||||| | |||||||||||| |||| ||||||| | |  ||||||  ||| |||  ||| |||||||||||||    
T  9693435 gtcctactcaacaacagcttcttgacttcctccgtttcaaatccatcgatcatctcaacttctttgtctctcatctcctttatgtcctcctcaaagacgc 9693336  T
Q  305 tgctccctccggtgggcctcgcctctctgtcgccaatggtgtgtgggttgaacaaaccctttctcttcaaacttccttc 383  Q
      || | |||||||| |||| ||||||| ||||||||||||||||||| ||  ||||||||||||||||| ||||||||    
T  9693335 aacttcttccggtggtcctcacctctctttcgccaatggtgtgtgggtagagaaaaccctttctcttcaaccttccttc 9693257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 415
Target Start/End: Complemental strand, 21465864 - 21465787
Alignment:
Q  338 caatggtgtgtgggttgaacaaaccctttctcttcaaacttccttccaaaagattgtttcttctgatttccaagccaa 415  Q
    ||||||| |||||||||||||| | |||||||||||| ||||||||| ||| |||||  || |||||||| |||||||    
T  21465864 caatggtatgtgggttgaacaatcactttctcttcaaccttccttccgaaaaattgtagctactgatttcaaagccaa 21465787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 30652024 - 30652072
Alignment:
Q  113 acatctcttctctaaacaatccaacaacaacattgtgttttcaccactc 161  Q
    |||||||||||| ||| ||||  |||||||||| |||||||||||||||    
T  30652024 acatctcttctccaaagaatcagacaacaacatcgtgttttcaccactc 30652072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 65 - 386
Target Start/End: Original strand, 46478206 - 46478527
Alignment:
Q  65 tcgtgaatcaatgatcacccaaaccaacgtatcactcaaaatcgctaaacatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcg 164  Q
    ||||||||||||   || ||||||||||||||||||||   | || |||||||||||||| ||| ||||  |||||||||| |||||||| ||||| ||     
T  46478206 tcgtgaatcaatagccaaccaaaccaacgtatcactcagcgttgcaaaacatctcttctccaaagaatcagacaacaacatcgtgttttctccactttca 46478305  T
Q  165 attcaagttattctcagcatcatcgcttccggctctgagggttccacacagcaacaacttctcgacttcctcggcttcaaatccatccatcaactcaact 264  Q
     | |||||| | || || || |||||||| || ||||||||| |||| || ||||||||| || |||||||    | |||||||| | |||| |||||||    
T  46478306 ctccaagttgtgctaagtataatcgcttctggttctgagggtcccactcaacaacaacttttcaacttccttcaatccaaatccaccgatcatctcaact 46478405  T
Q  265 ccgtcatctctcgcctcatttccgtcatcctcaaagacgctgctccctccggtgggcctcgcctctctgtcgccaatggtgtgtgggttgaacaaaccct 364  Q
     | ||   || |  ||| ||||||||||||||   |||||| ||||| ||||||| |||| ||||||| ||| | | ||||| |||||||| ||||||||    
T  46478406 acttcgcttcacagctcgtttccgtcatcctctccgacgcttctcccgccggtggtcctctcctctctttcgtcgacggtgtttgggttgatcaaaccct 46478505  T
Q  365 ttctcttcaaacttccttccaa 386  Q
    |||||||||| |||||||||||    
T  46478506 ttctcttcaaccttccttccaa 46478527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 66 - 383
Target Start/End: Original strand, 46469607 - 46469924
Alignment:
Q  66 cgtgaatcaatgatcacccaaaccaacgtatcactcaaaatcgctaaacatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcga 165  Q
    ||||||||||| | || ||||||||| || || || || || || |||||||||||||| ||| ||||  |||| ||| |||||||||| || || ||      
T  46469607 cgtgaatcaatcaccaaccaaaccaaagtttcccttaacatggccaaacatctcttctcaaaagaatcagacaagaacgttgtgttttcgccgctgtcac 46469706  T
Q  166 ttcaagttattctcagcatcatcgcttccggctctgagggttccacacagcaacaacttctcgacttcctcggcttcaaatccatccatcaactcaactc 265  Q
    | |||||||| |||| |||  ||||| | | ||||||||||   ||||| |||||||||||||| |||||| | | |||||||||| | || ||||||||    
T  46469707 tccaagttatgctcaacattgtcgctgctgcctctgagggtcgtacacaacaacaacttctcgaattcctccgttccaaatccatcgaccatctcaactc 46469806  T
Q  266 cgtcatctctcgcctcatttccgtcatcctcaaagacgctgctccctccggtgggcctcgcctctctgtcgccaatggtgtgtgggttgaacaaaccctt 365  Q
    | |||  ||||  ||| ||||| |||||||    || |||||||| ||||||||| | ||||||||| || || |  ||||||||||||| |||||||||    
T  46469807 cttcacttctcatctcgtttccatcatcctatctgatgctgctccttccggtgggtcgcgcctctctttcacccaacgtgtgtgggttgatcaaaccctt 46469906  T
Q  366 tctcttcaaacttccttc 383  Q
    ||||||||| ||||||||    
T  46469907 tctcttcaaccttccttc 46469924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 140 - 265
Target Start/End: Complemental strand, 46507246 - 46507118
Alignment:
Q  140 caacattgtgttttcaccactctcgattcaagttattctcagcatc---atcgcttccggctctgagggttccacacagcaacaacttctcgacttcctc 236  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||||| |||| || |||||  |||| |||||||||    
T  46507246 caacattatgttttcaccactctcgattcaagttattctcagcatcataatcgctgccggctctgagggtcccactcaacaacagattcttgacttcctc 46507147  T
Q  237 ggcttcaaatccatccatcaactcaactc 265  Q
     ||| |||||| |||||||| ||||||||    
T  46507146 tgctccaaatctatccatcatctcaactc 46507118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 135 - 383
Target Start/End: Original strand, 46490018 - 46490266
Alignment:
Q  135 aacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgcttccggctctgagggttccacacagcaacaacttctcgacttcc 234  Q
    ||||| ||||||||||| || ||||| ||| | |||||| | ||||||||||||||| | |||||||| || |||||||| ||||| ||||| |||||||    
T  46490018 aacaagaacattgtgttatcgccactttcgctccaagttgtactcagcatcatcgctgctggctctgacggctccacacaacaacagcttcttgacttcc 46490117  T
Q  235 tcggcttcaaatccatccatcaactcaactccgtcatctctcgcctcatttccgtcatcctcaaagacgctgctccctccggtgggcctcgcctctctgt 334  Q
    ||   |  || |||| | |||||||||||||  ||  ||||   ||| |||||||||| |||||||||| ||||||| | || || ||||| |||||| |    
T  46490118 tccaatctaactccaccgatcaactcaactcattcgcctctaagctcgtttccgtcattctcaaagacggtgctcccgctggcggacctcgtctctcttt 46490217  T
Q  335 cgccaatggtgtgtgggttgaacaaaccctttctcttcaaacttccttc 383  Q
     | | | ||||||||||| ||| ||||||||||||||||| ||||||||    
T  46490218 tgtcgacggtgtgtgggtggaaaaaaccctttctcttcaaccttccttc 46490266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 180 - 383
Target Start/End: Complemental strand, 47398397 - 47398194
Alignment:
Q  180 agcatcatcgcttccggctctgagggttccacacagcaacaacttctcgacttcctcggcttcaaatccatccatcaactcaactccgtcatctctcgcc 279  Q
    ||||||| |||| | |||||||||||| ||||||| ||| | |||||||||||||| || | ||| ||||   | || ||||||||| ||  |||||  |    
T  47398397 agcatcaacgctgctggctctgagggtcccacacaacaagagcttctcgacttccttgggtccaagtccactgaacatctcaactccttcgcctctcatc 47398298  T
Q  280 tcatttccgtcatcctcaaagacgctgctccctccggtgggcctcgcctctctgtcgccaatggtgtgtgggttgaacaaaccctttctcttcaaacttc 379  Q
    || |||| ||| | ||||| || ||| ||||| ||| ||| |||||||||||| ||| |||||| |||||||||||||||||||||||||||||| ||||    
T  47398297 tcctttcagtcgtactcaaggatgcttctcccaccgatggacctcgcctctctttcgtcaatggcgtgtgggttgaacaaaccctttctcttcaaccttc 47398198  T
Q  380 cttc 383  Q
    ||||    
T  47398197 cttc 47398194  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 147 - 386
Target Start/End: Original strand, 45900894 - 45901133
Alignment:
Q  147 gtgttttcaccactctcgattcaagttattctcagcatcatcgcttccggctctgagggttccacacagcaacaacttctcgacttcctcggcttcaaat 246  Q
    |||||||| ||||||||| | |||||||||||||||||||| ||| | ||  |||||||| | ||||| || || ||| || ||||||||   ||  |||    
T  45900894 gtgttttctccactctcgctccaagttattctcagcatcattgctgctggtgctgagggtccaacacaacagcagcttatccacttcctccaatttgaat 45900993  T
Q  247 ccatccatcaactcaactccgtcatctctcgcctcatttccgtcatcctcaaagacgctgctccctccggtgggcctcgcctctctgtcgccaatggtgt 346  Q
    ||| | | || ||||||||  |   |||||| ||| || | ||| ||||| |||||||||||||  | || ||| || |||||||||| |||||||||||    
T  45900994 ccaccgaccatctcaactcttttgcctctcggctcgttactgtcgtcctccaagacgctgctcctgctggcgggacttgcctctctgttgccaatggtgt 45901093  T
Q  347 gtgggttgaacaaaccctttctcttcaaacttccttccaa 386  Q
    || |||||| ||||| |||||||||||| |||||||||||    
T  45901094 gttggttgatcaaacactttctcttcaaccttccttccaa 45901133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 136 - 383
Target Start/End: Original strand, 5155255 - 5155502
Alignment:
Q  136 acaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgcttccggctctgagggttccacacagcaacaacttctcgacttcct 235  Q
    |||| |||||||||||||| ||||| ||  |||||||| | || |||||||||||| | |||||||||||| ||||||| ||||| ||||||||||||||    
T  5155255 acaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaacagcttctcgacttcct 5155354  T
Q  236 cggcttcaaatccatccatcaactcaactccgtcatctctcgcctcatttccgtcatcctcaaagacgctgctccctccggtgggcctcgcctctctgtc 335  Q
    |   | ||||||||   | || ||||||    |   |||||  ||  |||| ||| | |||   |||||||||||| | ||||| |||||  ||||  ||    
T  5155355 cctgtccaaatccactgaccatctcaacgatcttgcctctcaacttgtttctgtcgtgctcttcgacgctgctcccacaggtggacctcgattctccttc 5155454  T
Q  336 gccaatggtgtgtgggttgaacaaaccctttctcttcaaacttccttc 383  Q
    | ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  5155455 gtcaatggtgtatgggttgaacaaaccctttctcttcaaccttccttc 5155502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 180 - 311
Target Start/End: Original strand, 46497380 - 46497511
Alignment:
Q  180 agcatcatcgcttccggctctgagggttccacacagcaacaacttctcgacttcctcggcttcaaatccatccatcaactcaactccgtcatctctcgcc 279  Q
    |||||||||||| | ||||| |||||  ||||||| |||||||||||| ||||||||   | |||||||| | |||||||||||||| ||  ||||  ||    
T  46497380 agcatcatcgctactggctccgagggccccacacaacaacaacttctcaacttcctccaatccaaatccacctatcaactcaactccttcgcctctaccc 46497479  T
Q  280 tcatttccgtcatcctcaaagacgctgctccc 311  Q
    || | |||||||| || |||||||||||||||    
T  46497480 tcgtctccgtcattctaaaagacgctgctccc 46497511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 383
Target Start/End: Complemental strand, 47415026 - 47414838
Alignment:
Q  195 ggctctgagggttccacacagcaacaacttctcgacttcctcggcttcaaatccatccatcaactcaactccgtcatctctcgcctcatttccgtcatcc 294  Q
    |||||||||||| ||||||| ||| | |||||||||||||||||||  ||||||||  |||| ||||||||| |   |||||  ||| |||| | ||| |    
T  47415026 ggctctgagggtaccacacatcaaaagcttctcgacttcctcggctcaaaatccattgatcatctcaactcctttgcctctcatctcctttcagccatac 47414927  T
Q  295 tcaaagacgctgctccctccggtgggcctcgcctctctgtcgccaatggtgtgtgggttgaacaaaccctttctcttcaaacttccttc 383  Q
    |||| ||  || ||||  || |||||||| || ||||| | | ||||||  | |||||||||||| ||||||||||| || ||||||||    
T  47414926 tcaatgatccttctcctgccagtgggccttgcgtctcttttgtcaatggcctatgggttgaacaatccctttctcttaaaccttccttc 47414838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 46550223 - 46550160
Alignment:
Q  319 ggcctcgcctctctgtcgccaatggtgtgtgggttgaacaaaccctttctcttcaaacttcctt 382  Q
    ||||| |||||||| ||| |||||||| |||| ||||||||||||||||||||||| |||||||    
T  46550223 ggccttgcctctctttcgtcaatggtgcgtggattgaacaaaccctttctcttcaaccttcctt 46550160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 236
Target Start/End: Original strand, 16023881 - 16024034
Alignment:
Q  83 ccaaaccaacgtatcactcaaaatcgctaaacatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagc 182  Q
    ||||||||||||||| ||||| ||||  ||||||||||| || ||||||||  |||| |||||  ||||||| || || ||  |||||||| ||||||||    
T  16023881 ccaaaccaacgtatccctcaacatcgtcaaacatctcttttcaaaacaatcagacaataacatcatgttttctccgctatcacttcaagttgttctcagc 16023980  T
Q  183 atcatcgcttccggctctgagggttccacacagcaacaacttctcgacttcctc 236  Q
     | |||||| | || || |||||  | ||||| ||||| |||||| ||||||||    
T  16023981 cttatcgctgctggatccgagggaccgacacaacaacagcttctccacttcctc 16024034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 4582458 - 4582375
Alignment:
Q  303 gctgctccctccggtgggcctcgcctctctgtcgccaatggtgtgtgggttgaacaaaccctttctcttcaaacttccttccaa 386  Q
    ||||||||||||||||| ||| |||||||| ||   ||||| ||||||||||| |||| || |||||| ||| |||||||||||    
T  4582458 gctgctccctccggtggtccttgcctctctttccttaatggagtgtgggttgatcaaagccgttctctgcaaccttccttccaa 4582375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 235
Target Start/End: Complemental strand, 4582662 - 4582526
Alignment:
Q  99 ctcaaaatcgctaaacatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgcttccggct 198  Q
    |||| |||||| ||| |||||||||| ||| ||||  | || |||||||||||||| ||||| ||| | ||||||   |||||||| |||||| | ||||    
T  4582662 ctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcgctgctggct 4582563  T
Q  199 ctgagggttccacacagcaacaacttctcgacttcct 235  Q
    |||| ||  |||||    |||| ||||||||||||||    
T  4582562 ctgacggacccacaagagaacagcttctcgacttcct 4582526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 46527765 - 46527717
Alignment:
Q  127 aacaatccaacaacaacattgtgttttcaccactctcgattcaagttat 175  Q
    ||||||||||||| ||||| |||||||| ||||||||| | ||||||||    
T  46527765 aacaatccaacaagaacatcgtgttttctccactctcgctccaagttat 46527717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 20143684 - 20143744
Alignment:
Q  323 tcgcctctctgtcgccaatggtgtgtgggttgaacaaaccctttctcttcaaacttccttc 383  Q
    |||||||||| | | | ||||||| ||||||||||||||||||||||||||| ||||||||    
T  20143684 tcgcctctcttttgtcgatggtgtatgggttgaacaaaccctttctcttcaaccttccttc 20143744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 20169826 - 20169766
Alignment:
Q  323 tcgcctctctgtcgccaatggtgtgtgggttgaacaaaccctttctcttcaaacttccttc 383  Q
    |||||||||| | | | ||||||| ||||||||||||||||||||||||||| ||||||||    
T  20169826 tcgcctctcttttgtcgatggtgtatgggttgaacaaaccctttctcttcaaccttccttc 20169766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 275
Target Start/End: Original strand, 20143496 - 20143645
Alignment:
Q  126 aaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgcttccggctctgagggttccacacagcaacaacttc 225  Q
    ||||||||  |||| ||||| |||||||| ||||| ||  | ||| || | |||||| | |||||| | || ||||| | | ||||||| |||||||||     
T  20143496 aaacaatcagacaagaacatcgtgttttcgccactatcactccaaattgtgctcagccttatcgctgctggttctgaagatcccacacaacaacaacttg 20143595  T
Q  226 tcgacttcctcggcttcaaatccatccatcaactcaactccgtcatctct 275  Q
    ||||||||||| |||||||||||| | |||| || |||||| ||| ||||    
T  20143596 tcgacttcctccgcttcaaatccaccaatcatcttaactccttcacctct 20143645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 20154380 - 20154511
Alignment:
Q  105 atcgctaaacatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgcttccggctctgagg 204  Q
    ||||| |||||||| ||||  ||||||||  |||| |||||||||||||| ||| | ||  | |||||| |  ||||| ||| |||| | |||||||| |    
T  20154380 atcgccaaacatctgttcttgaaacaatcagacaagaacattgtgttttcgccagtgtcactccaagttgtgttcagcctcaccgctgctggctctgaag 20154479  T
Q  205 gttccacacagcaacaacttctcgacttcctc 236  Q
    || ||||||| ||||| ||| |||||||||||    
T  20154480 gtcccacacaacaacagcttgtcgacttcctc 20154511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 262
Target Start/End: Complemental strand, 20170014 - 20169878
Alignment:
Q  126 aaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgcttccggctctgagggttccacacagcaacaacttc 225  Q
    ||||||||  |||| ||| | |||||||||||||| ||  ||||| || | |||||| | || ||| | || ||||| ||| ||||| | |||||||||     
T  20170014 aaacaatcagacaaaaacgtcgtgttttcaccactatcacttcaaattgtgctcagccttattgctactggttctgaaggtcccacaaaacaacaacttg 20169915  T
Q  226 tcgacttcctcggcttcaaatccatccatcaactcaa 262  Q
    ||||||||||| | |||||||||| | |||| |||||    
T  20169914 tcgacttcctccgtttcaaatccaccaatcatctcaa 20169878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 264
Target Start/End: Complemental strand, 16968014 - 16967863
Alignment:
Q  113 acatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgcttccggctctgagggttccaca 212  Q
    |||||| ||||| ||| ||||  |||||||||| |||||||||||||||||  | |||||| |  | ||||| |||||||  || ||||||||| ||||     
T  16968014 acatctattctccaaagaatcggacaacaacatcgtgttttcaccactctcactccaagttgtgttaagcataatcgcttttggttctgagggtcccact 16967915  T
Q  213 cagcaacaacttctcgacttcctcggcttcaaatccatccatcaactcaact 264  Q
    || ||||||||| || | ||||||   | |||||||||| |||| |||||||    
T  16967914 caacaacaacttttcaaattcctccaatccaaatccatcgatcatctcaact 16967863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 383
Target Start/End: Original strand, 17734673 - 17734750
Alignment:
Q  306 gctccctccggtgggcctcgcctctctgtcgccaatggtgtgtgggttgaacaaaccctttctcttcaaacttccttc 383  Q
    |||||| ||||||| ||| |||| |||  || |||||||||||||||||||||| | ||| |||||||| ||||||||    
T  17734673 gctcccgccggtggtccttgcctgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttccttc 17734750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 16729594 - 16729638
Alignment:
Q  338 caatggtgtgtgggttgaacaaaccctttctcttcaaacttcctt 382  Q
    |||||||||||||||||||||| | ||| |||||||| |||||||    
T  16729594 caatggtgtgtgggttgaacaatcacttcctcttcaaccttcctt 16729638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 17706666 - 17706710
Alignment:
Q  338 caatggtgtgtgggttgaacaaaccctttctcttcaaacttcctt 382  Q
    |||||||||||||||||||||| | ||| |||||||| |||||||    
T  17706666 caatggtgtgtgggttgaacaatcacttcctcttcaaccttcctt 17706710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 17716654 - 17716698
Alignment:
Q  338 caatggtgtgtgggttgaacaaaccctttctcttcaaacttcctt 382  Q
    |||||||||||||||||||||| | ||| |||||||| |||||||    
T  17716654 caatggtgtgtgggttgaacaatcacttcctcttcaaccttcctt 17716698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 33097480 - 33097528
Alignment:
Q  113 acatctcttctctaaacaatccaacaacaacattgtgttttcaccactc 161  Q
    |||||||||||| ||| ||||  |||||||||| |||||||||||||||    
T  33097480 acatctcttctccaaagaatcagacaacaacatcgtgttttcaccactc 33097528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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