View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11855_low_15 (Length: 423)
Name: NF11855_low_15
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_low_15 |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 11 - 423
Target Start/End: Complemental strand, 6960555 - 6960143
Alignment:
| Q |
11 |
acatcaaacagaaacaattaaacaacagaaacaatatggaaaaccagatggattatctaccaaatacaaattctaattaaaatcattttgtttctaataa |
110 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6960555 |
acatcaaacacaaacaattaaacaacagaaacaatatggaaaaccagatggattatctaccaaatacaaattctaattaaaatcattttgtttctaataa |
6960456 |
T |
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| Q |
111 |
ataaatatgaatatgtaccatatggtgatatctgtggtggattttcttcaaacggcgtagccttgacagaagacgcttggaaaatactgcttctggtgtt |
210 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6960455 |
ataaatataaatatgtaccatatggtgatatctgtggtggattttcttcaaacggcgtagccttgacagaagacgcttggaaaacactgcttctggtgtt |
6960356 |
T |
|
| Q |
211 |
ttttctgtccgactaagccagtttaaagtacttgaaaatgaacttggtttgcgctggataccgagtggaatgagtgtgatgttaacttctgattgaaaca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6960355 |
ttttctgtccgactaagccagtttaaagtacttgaaaatgaacttgctttgcgctggataccgagtggaatgagtgtgatgttaacttctgattgaaaca |
6960256 |
T |
|
| Q |
311 |
ctgtctttgctgctgaaggatccaagaacatattgaattctgcatacttgttggaaggaacagaaaatacatttcctttgtcattgctactcctgctgat |
410 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6960255 |
ctgtctttgctgctaaaggatccaagaacatattgaattctgcatacttgttggaaggaacagaaaatacatttcctttgtcattgctactcctgctgat |
6960156 |
T |
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| Q |
411 |
atgtcctcccatt |
423 |
Q |
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| T |
6960155 |
atgtcctcccatt |
6960143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 115 - 421
Target Start/End: Complemental strand, 6967881 - 6967575
Alignment:
| Q |
115 |
atatgaatatgtaccatatggtgatatctgtggtggattttcttcaaacggcgtagccttgacagaagacgcttggaaaatactgcttctggtgtttttt |
214 |
Q |
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||||||| || ||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| ||| |||||||| |||| |||||||||||||| |
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| T |
6967881 |
atatgaacatataccatatgttgatatctatggtggattttcttcagacggcgtagccttgacagaatacgtttggaaaacactgtttctggtgtttttt |
6967782 |
T |
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| Q |
215 |
ctgtccgactaagccagtttaaagtacttgaaaatgaacttggtttgcgctggataccgagtggaatgagtgtgatgttaacttctgattgaaacactgt |
314 |
Q |
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|| | |||| ||||| |||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||| | |
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| T |
6967781 |
ctatttgactgagccatcttaaagtacttgaaaatgaacttgctttttgctggatactgagtggaatgaatgtgatgttaacttccgattgaaacaccgc |
6967682 |
T |
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| Q |
315 |
ctttgctgctgaaggatccaagaacatattgaattctgcatacttgttggaaggaacagaaaatacatttcctttgtcattgctactcctgctgatatgt |
414 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
6967681 |
ctttgctgccaaaggatccaagaacatattgaattctgcatacttgttggaaggaacagaaaagacatttcctttgtcattggcactcctgctgatatgt |
6967582 |
T |
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| Q |
415 |
cctccca |
421 |
Q |
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||||||| |
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| T |
6967581 |
cctccca |
6967575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 194 - 423
Target Start/End: Original strand, 180924 - 181150
Alignment:
| Q |
194 |
atactgcttctggtgttttttctgtccgactaagccagtttaaagtacttgaaaatgaacttggtttgcgctggataccgagtggaatgagtgtgatgtt |
293 |
Q |
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||||||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
180924 |
atactgcttctggagttttttctgttctactgagccagtttaaagtacttgaaaatgaacttgctttgcgctggataccgagtggaacgagtgtgatgtt |
181023 |
T |
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| Q |
294 |
aacttctgattgaaacactgtctttgctgctgaaggatccaagaacatattgaattctgcatacttgttggaaggaacagaaaatacatttcctttgtca |
393 |
Q |
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||||||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
181024 |
aacttctgattgaaacaatgtctttgttgctaaaggat---agaacatattgaattctgcatacttgttggaaggaacagaaaatacatttcctttgtca |
181120 |
T |
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| Q |
394 |
ttgctactcctgctgatatgtcctcccatt |
423 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
181121 |
ttgccactcctgctgatatgtcctcccatt |
181150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 21745009 - 21744908
Alignment:
| Q |
194 |
atactgcttctggtgttttttctgtccgactaagccagtttaaagtacttgaaaatgaacttggtttgcgctggataccgagtggaatgagtgtgatgtt |
293 |
Q |
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||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| |
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| T |
21745009 |
atactgcttctggtgttttttctgtcctactgaaccagtttaaagtacttgaaaatgaacttgctttgtgctggataccgagtggaatgagtgggatgtt |
21744910 |
T |
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| Q |
294 |
aa |
295 |
Q |
| |
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|| |
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| T |
21744909 |
aa |
21744908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 42740863 - 42740762
Alignment:
| Q |
194 |
atactgcttctggtgttttttctgtccgactaagccagtttaaagtacttgaaaatgaacttggtttgcgctggataccgagtggaatgagtgtgatgtt |
293 |
Q |
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||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
42740863 |
atactgcttctggtgttttttctgtcctactgaaccagtttaaagtacttgaaaatgaacttgctttatgctggataccgagtggaatgagtgtgatgtt |
42740764 |
T |
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| Q |
294 |
aa |
295 |
Q |
| |
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|| |
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| T |
42740763 |
aa |
42740762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 276 - 421
Target Start/End: Original strand, 49100604 - 49100749
Alignment:
| Q |
276 |
tggaatgagtgtgatgttaacttctgattgaaacactgtctttgctgctgaaggatccaagaacatattgaattctgcatacttgttggaaggaacagaa |
375 |
Q |
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||||||||||||||||||||||||||||| ||||||||| || || ||| ||||||| | |||||| |||||||||||||| | ||| ||||| || ||| |
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| T |
49100604 |
tggaatgagtgtgatgttaacttctgattcaaacactgttttggccgctaaaggatctaggaacatgttgaattctgcatattggtttgaagggactgaa |
49100703 |
T |
|
| Q |
376 |
aatacatttcctttgtcattgctactcctgctgatatgtcctccca |
421 |
Q |
| |
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|| |||||||||||||| | || |||||||||| |||||||||| |
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| T |
49100704 |
aaaacatttcctttgtcttctgtattcctgctgatgtgtcctccca |
49100749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 276 - 392
Target Start/End: Original strand, 49112398 - 49112514
Alignment:
| Q |
276 |
tggaatgagtgtgatgttaacttctgattgaaacactgtctttgctgctgaaggatccaagaacatattgaattctgcatacttgttggaaggaacagaa |
375 |
Q |
| |
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||||||||||||||| ||||||||||||| |||||||| || || ||| ||||||| | |||||| |||||||||||||| | ||| |||||||| ||| |
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| T |
49112398 |
tggaatgagtgtgatcttaacttctgattcgaacactgttttggcggctaaaggatctaggaacatgttgaattctgcatattggttagaaggaactgaa |
49112497 |
T |
|
| Q |
376 |
aatacatttcctttgtc |
392 |
Q |
| |
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|| |||||||||||||| |
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| T |
49112498 |
aacacatttcctttgtc |
49112514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 49100454 - 49100541
Alignment:
| Q |
126 |
taccatatggtgatatctgtggtggattttcttcaaacggcgtagccttgacagaagacgcttggaaaatactgcttctggtgttttt |
213 |
Q |
| |
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|||||||||||||||||||| || |||| ||||||| || ||| ||||||| ||||||||||||||| | | |||||||||||| |
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| T |
49100454 |
taccatatggtgatatctgtcatgaatttgcttcaaatggtataggcttgacaacagacgcttggaaaatgcaacctctggtgttttt |
49100541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 4302202 - 4302117
Alignment:
| Q |
128 |
ccatatggtgatatctgtggtggattttcttcaaacggcgtagccttgacagaagacgcttggaaaatactgcttctggtgttttt |
213 |
Q |
| |
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|||||||||||||||||| || |||| ||||||| || |||| ||||||| | ||||||||||||||| | |||||||||||| |
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| T |
4302202 |
ccatatggtgatatctgtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctggtgttttt |
4302117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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