View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11855_low_18 (Length: 350)

Name: NF11855_low_18
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11855_low_18
NF11855_low_18
[»] chr6 (9 HSPs)
chr6 (19-340)||(2357947-2358268)
chr6 (30-288)||(2369019-2369277)
chr6 (30-198)||(2363273-2363441)
chr6 (60-166)||(2261198-2261304)
chr6 (26-266)||(2340185-2340425)
chr6 (27-115)||(14753379-14753467)
chr6 (27-114)||(14711309-14711396)
chr6 (19-169)||(2307497-2307647)
chr6 (19-169)||(2351631-2351781)
[»] chr3 (1 HSPs)
chr3 (27-168)||(4305968-4306109)
[»] scaffold0408 (1 HSPs)
scaffold0408 (27-115)||(596-684)
[»] chr4 (1 HSPs)
chr4 (71-266)||(5804059-5804254)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 2357947 - 2358268
Alignment:
Q  19 ttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggact 118  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  2357947 ttcttaacacttataaagatgttgatgttcgagggtgtcactttgagttgttaccatttggaagtggtagaaggatttgtcctgaaatatcttttggact 2358046  T
Q  119 agaaatgatgcatttaattttggctaattttttgcattcatttgaaatcttgtattcatcgagtgagcctattgatatgacagaagtctttggattgacg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2358047 agaaatgatgcatttaattttggctaattttttgcattcatttgaaatcttgtattcatcgagtgagcctattgatatgacagaagtctttggattgacg 2358146  T
Q  219 gtctccaaagctaccccacttgagattctggttaaaccatgtttgtctgttaattgctacgaaactatgtaaacaatggaagattcaacctattggccat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2358147 gtctccaaagctaccccacttgagattctggttaaaccatgtttgtctgttaattgctacgaaactatgtaaacaatggaagattcaacctattggccat 2358246  T
Q  319 tatcaaactatgtaaacctttg 340  Q
    ||||||||||||||||||||||    
T  2358247 tatcaaactatgtaaacctttg 2358268  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 30 - 288
Target Start/End: Original strand, 2369019 - 2369277
Alignment:
Q  30 cataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgc 129  Q
    |||||||| ||||||||| |||| ||||| |||||| | |||||||||||| |||||||||||||||| || ||||| || ||||| ||  ||||| |||    
T  2369019 cataaagacgttgatgttagaggtcatcattttgagctattaccatttggaggtggtagaaggatttgccctggaatgtcatttggccttcaaatggtgc 2369118  T
Q  130 atttaattttggctaattttttgcattcatttgaaatcttgtattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctccaaagc 229  Q
    |||||| |||||||| |||||||||||| |||||||||||  || |||| ||||| |||||||||||||| |||   |||||||| ||   | ||||| |    
T  2369119 atttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaac 2369218  T
Q  230 taccccacttgagattctggttaaaccatgtttgtctgttaattgctacgaaactatgt 288  Q
     || || |||||||||||  |||| ||| ||||||||   |||||||| |||| |||||    
T  2369219 aactcctcttgagattcttattaagccacgtttgtcttcgaattgctatgaaattatgt 2369277  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 2363273 - 2363441
Alignment:
Q  30 cataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgc 129  Q
    ||||||||| ||||| || ||||  |||| |||||| | |||||||||||| ||||||||||||||||||| |||||||| || || ||  ||||| |||    
T  2363273 cataaagatattgattttagaggtaatcattttgagctattaccatttggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgc 2363372  T
Q  130 atttaattttggctaattttttgcattcatttgaaatcttgtattcatcgagtgagcctattgatatga 198  Q
    |||||| |||||||| |||||||||||| |||||||||||  || |||| ||||| |||||||||||||    
T  2363373 atttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatga 2363441  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 60 - 166
Target Start/End: Complemental strand, 2261304 - 2261198
Alignment:
Q  60 tttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcat 159  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||  | ||||| ||||||| ||||||||||||||| || || |    
T  2261304 tttgagttgttaccatttggaagtggtagaaggatatgtccaggaatatcttttggtcttcatatgattcatttaactttggctaattttttacactcct 2261205  T
Q  160 ttgaaat 166  Q
    |||||||    
T  2261204 ttgaaat 2261198  T

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Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 26 - 266
Target Start/End: Original strand, 2340185 - 2340425
Alignment:
Q  26 cactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatg 125  Q
    ||||||||||| |||||||||| ||||  |||| |||||  | |||||||||||||||||||||||||  ||||| |||||||| ||||||||  |||||    
T  2340185 cactcataaagctgttgatgttagaggtaatcattttgaactattaccatttggaagtggtagaaggaaatgtcctggaatatcgtttggacttcaaatg 2340284  T
Q  126 atgcatttaattttggctaattttttgcattcatttgaaatcttgtattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctcca 225  Q
     ||||||| |   | |||| |||||||||||| ||||| |||||  || || |   |||  || |||||||||  |||| ||||||||  |||   ||||    
T  2340285 ctgcatttcaccctagctagttttttgcattcctttgatatcttaaatccaacacctgatgctgttgatatgagtgaagcctttggatcaacgaattcca 2340384  T
Q  226 aagctaccccacttgagattctggttaaaccatgtttgtct 266  Q
    ||||||| ||||||||||||||  |||||||| ||||||||    
T  2340385 aagctactccacttgagattctcattaaaccacgtttgtct 2340425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 14753467 - 14753379
Alignment:
Q  27 actcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttgg 115  Q
    |||||||||||||||||||||   || ||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||    
T  14753467 actcataaagatgttgatgttaagggtcatcattttgagtttttaccatttggaagtggaagaaggatttgtcctggaatatcctttgg 14753379  T

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Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 14711396 - 14711309
Alignment:
Q  27 actcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttg 114  Q
    ||||||||||||||||||||| ||||  |||| |||||| | ||||||||||||||||| |||||||| ||||| |||||||| ||||    
T  14711396 actcataaagatgttgatgttagaggtaatcattttgagcttttaccatttggaagtggaagaaggatgtgtcctggaatatcctttg 14711309  T

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Target: chr6; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 2307497 - 2307647
Alignment:
Q  19 ttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggact 118  Q
    |||||| |||||||||||||||||||||| | ||   | | |||| | | || ||||||||||||||||||||||| || || ||||||||  |||||||    
T  2307497 ttcttaccactcataaagatgttgatgttaggggtagtaattttgtgctattgccatttggaagtggtagaaggatatgccctggaatatcacttggact 2307596  T
Q  119 agaaatgatgcatttaattttggctaattttttgcattcatttgaaatctt 169  Q
      ||||| ||||||| ||| | |||| |||||||||||| ||||| |||||    
T  2307597 tcaaatgctgcatttcattctagctagttttttgcattcctttgatatctt 2307647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 2351631 - 2351781
Alignment:
Q  19 ttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggact 118  Q
    |||||| ||||||||||| |||||||||| ||||  |||| |||||  |  ||||||||||||||||||||||||  ||||| | |||||||||||||||    
T  2351631 ttcttaccactcataaagttgttgatgttagaggtaatcattttgaactactaccatttggaagtggtagaaggaagtgtcctgcaatatcttttggact 2351730  T
Q  119 agaaatgatgcatttaattttggctaattttttgcattcatttgaaatctt 169  Q
      ||||  ||||||| | | | || | |||||||||||| ||||| |||||    
T  2351731 tcaaattgtgcatttcactctagcaagttttttgcattcctttgatatctt 2351781  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 27 - 168
Target Start/End: Original strand, 4305968 - 4306109
Alignment:
Q  27 actcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatga 126  Q
    |||||||||| ||||||||||   || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||     
T  4305968 actcataaaggtgttgatgttaagggtcatcattttgagttattaccatttggaagtggtagaaggatttgtccaggaatatcttatggccttcaaatgg 4306067  T
Q  127 tgcatttaattttggctaattttttgcattcatttgaaatct 168  Q
    ||||||||  |||||||| |||||||||||| ||||||||||    
T  4306068 tgcatttatctttggctagttttttgcattcctttgaaatct 4306109  T

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Target: scaffold0408 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 596 - 684
Alignment:
Q  27 actcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttgg 115  Q
    |||||||||||||||||||||   || ||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||    
T  596 actcataaagatgttgatgttaagggtcatcattttgagtttttaccatttggaagtggaagaaggatttgtcctggaatatcctttgg 684  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 266
Target Start/End: Complemental strand, 5804254 - 5804059
Alignment:
Q  71 accatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatcttg 170  Q
    |||||||||||||||||||||||  ||||| ||||||| |||||||||  ||||| ||||||| | | | |||| |||||||||||| ||||| |||||     
T  5804254 accatttggaagtggtagaaggaaatgtcctggaatatgttttggacttcaaatggtgcattttactctagctagttttttgcattcctttgatatctta 5804155  T
Q  171 tattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctccaaagctaccccacttgagattctggttaaaccatgtttgtct 266  Q
     || || |   ||| | |||||||||||| ||||  |||||||| ||      ||||||||| |||||||| |||||  |||||||| ||||||||    
T  5804154 aatccaacacctgaacttattgatatgactgaagaatttggattaacaaatagcaaagctactccacttgaaattctcattaaaccacgtttgtct 5804059  T

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