View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11855_low_19 (Length: 343)
Name: NF11855_low_19
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_low_19 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 5709923 - 5709591
Alignment:
| Q |
11 |
acatcaaatatgtcttggaactcactgcaacatcaaggtaccaaaaagaggacatttcaattaagaaatcatggaagataatcataaatggagatgtttt |
110 |
Q |
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| T |
5709923 |
acatcaaatatgtcttggaactcactgcaacatcaaggtaacaaaaagaggacatttctattaagaaatcatggaagataatcataaatggagatgtttt |
5709824 |
T |
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| Q |
111 |
ctcaactaaagttatttataatgcaaacaatacaaatgtgcaaaccttggatcagcccagaaagacgatttatcaagctctggaacaatgagagtgacat |
210 |
Q |
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| T |
5709823 |
ctcaactaaagttatttatgatgcaaacaatacaaatgtgcaaaccttggatcagcccagaaagacgatttatcaagctctggaacaatgagagtgacat |
5709724 |
T |
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| Q |
211 |
ttaaatgtcttgcaatagcaaccatgtcgcatatctgcagaagagaattccaaattttgagaaaaacagaatcaagcttattgtacttgtataattttaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5709723 |
ttaaatgtcttgcaatagcaaccatgtcgcatatctgcagaagagaattccaaattttgagaaaaacagaatcaaacttattgtacttgtataattttaa |
5709624 |
T |
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| Q |
311 |
tgattgcaacaaaggtaactaatgctaagtact |
343 |
Q |
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| T |
5709623 |
tgattgcaacaaaggtaactaatgctaagtact |
5709591 |
T |
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