View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11855_low_20 (Length: 329)
Name: NF11855_low_20
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_low_20 |
 |  |
|
| [»] chr1 (9 HSPs) |
 |  |
|
| [»] chr2 (3 HSPs) |
 |  |
|
Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 50789142 - 50788824
Alignment:
| Q |
11 |
caaagggttccaaagagagcaaaatctacagcttcacagaagaggacacaacttgccttggaagcttaagcagaagactacaaaagagcctaagagaaag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50789142 |
caaagggttccaaagagagcaaaatctacagcttcacagaagaggacacaacttgccttggaagcttaagcagaagactacaaaagaacctaagagaaag |
50789043 |
T |
 |
| Q |
111 |
gtttatctgtgtcctgagcccacatgcgttcatcatgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50789042 |
gtttatctgtgtcctgagcccacatgcgttcatcatgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtg |
50788943 |
T |
 |
| Q |
211 |
agaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtgtga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50788942 |
agaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtgtga |
50788843 |
T |
 |
| Q |
311 |
ctgtggcactctcttctcc |
329 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
50788842 |
ctgtggcactctcttctcc |
50788824 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 12 - 329
Target Start/End: Original strand, 12774741 - 12775058
Alignment:
| Q |
12 |
aaagggttccaaagagagcaaaatctacagcttcacagaagaggacacaacttgccttggaagcttaagcagaagactacaaaagagcctaagagaaagg |
111 |
Q |
| |
|
|||||||||||||| ||||||||| |||| || || |||||||||||||| |||||||||||||| ||||| |||| || |||||||| |||||||||| |
|
|
| T |
12774741 |
aaagggttccaaagggagcaaaatttacaactacatagaagaggacacaatttgccttggaagctaaagcaaaagagtaacaaagagccaaagagaaagg |
12774840 |
T |
 |
| Q |
112 |
tttatctgtgtcctgagcccacatgcgttcatcatgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtga |
211 |
Q |
| |
|
||||| ||||||| || || ||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| | | | || |||||||| |
|
|
| T |
12774841 |
tttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaaacactattttagaaagcatggtga |
12774940 |
T |
 |
| Q |
212 |
gaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtgtgac |
311 |
Q |
| |
|
||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||| |||||||| || | || ||||| |||||| |
|
|
| T |
12774941 |
gaaaaaatggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtactaaggagtatagatgtgac |
12775040 |
T |
 |
| Q |
312 |
tgtggcactctcttctcc |
329 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12775041 |
tgtggcactctcttctcc |
12775058 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 12804833 - 12804517
Alignment:
| Q |
12 |
aaagggttccaaagagagcaaaatctacagcttcacagaagaggacacaacttgccttggaagcttaagcagaagactacaaaagagcctaagagaaagg |
111 |
Q |
| |
|
|||||||| ||||| ||||||||| |||| || || |||||||||||||| |||||||||||||| ||||| |||| || |||||||| |||||||||| |
|
|
| T |
12804833 |
aaagggtttcaaagggagcaaaatttacaactacatagaagaggacacaatttgccttggaagctaaagcaaaagagtaacaaagagccaaagagaaagg |
12804734 |
T |
 |
| Q |
112 |
tttatctgtgtcctgagcccacatgcgttcatcatgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtga |
211 |
Q |
| |
|
||||| ||||||| || || ||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||| ||| | || |||||||| |
|
|
| T |
12804733 |
tttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaagcacttttctagaaagcatggtga |
12804634 |
T |
 |
| Q |
212 |
gaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtgtgac |
311 |
Q |
| |
|
||| || ||||| ||||| ||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||| || || || ||||| |||||| |
|
|
| T |
12804633 |
gaaaaagtggaaatgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactagggagtatagatgtgac |
12804534 |
T |
 |
| Q |
312 |
tgtggcactctcttctc |
328 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12804533 |
tgtggcactctcttctc |
12804517 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 12 - 328
Target Start/End: Original strand, 42286921 - 42287237
Alignment:
| Q |
12 |
aaagggttccaaagagagcaaaatctacagcttcacagaagaggacacaacttgccttggaagcttaagcagaagactacaaaagagcctaagagaaagg |
111 |
Q |
| |
|
|||||||| ||||| ||||||||||| || ||||| |||||||||||||| | ||||||||||| ||||| ||| | | |||||||| | |||||||| |
|
|
| T |
42286921 |
aaagggtttcaaagggagcaaaatcttcaacttcatagaagaggacacaatcttccttggaagctaaagcaaaagtccaacaaagagccaaggagaaagg |
42287020 |
T |
 |
| Q |
112 |
tttatctgtgtcctgagcccacatgcgttcatcatgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtga |
211 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| ||||||||||| || | || || || ||||| ||||| || || | |||||| || || ||||| |
|
|
| T |
42287021 |
tttatttgtgtcctgagcccacatgcgtccatcacgacccttcaagagctttaggagatctaactggaattaaaaagcatttctctcgtaagcacggtga |
42287120 |
T |
 |
| Q |
212 |
gaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtgtgac |
311 |
Q |
| |
|
|||||| ||||| ||||| || ||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
42287121 |
gaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaatatagatgtgat |
42287220 |
T |
 |
| Q |
312 |
tgtggcactctcttctc |
328 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
42287221 |
tgtggcaccctcttctc |
42287237 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 120 - 316
Target Start/End: Complemental strand, 31644272 - 31644076
Alignment:
| Q |
120 |
tgtcctgagcccacatgcgttcatcatgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtgagaagaaat |
219 |
Q |
| |
|
||||| ||||| |||| ||||||||| ||||||||||||| ||||| || || || || ||||||||||| || | | |||||||||||||| |||| |
|
|
| T |
31644272 |
tgtccagagccttcatgtgttcatcataacccttcaagggctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaat |
31644173 |
T |
 |
| Q |
220 |
ggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtgtgactgtgg |
316 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||||| ||||||||||| || || ||||| || ||||| || ||||||||| ||||| ||||| |
|
|
| T |
31644172 |
ggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactcgagaatataaatgtgattgtgg |
31644076 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 120 - 328
Target Start/End: Original strand, 4160289 - 4160497
Alignment:
| Q |
120 |
tgtcctgagcccacatgcgttcatcatgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtgagaagaaat |
219 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||| |||| | | || || ||||||||||| | |
|
|
| T |
4160289 |
tgtccagagccaacatgtgttcaccatgacccttcaagggcacttggtgacctaactggaatcaagaagcactttttcaggaagcacggtgagaagaagt |
4160388 |
T |
 |
| Q |
220 |
ggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtgtgactgtggcac |
319 |
Q |
| |
|
|||||||||| || || ||||| ||||| ||||| || |||||||| || ||||| || | ||||||||| | ||| |||| |||||||||||| || |
|
|
| T |
4160389 |
ggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgtgactgtggaac |
4160488 |
T |
 |
| Q |
320 |
tctcttctc |
328 |
Q |
| |
|
|||||||| |
|
|
| T |
4160489 |
cctcttctc |
4160497 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 277
Target Start/End: Original strand, 36989153 - 36989409
Alignment:
| Q |
21 |
caaagagagcaaaatctacagcttcacagaagaggacacaacttgccttggaagcttaagcagaagactacaaaagagcctaagagaaaggtttatctgt |
120 |
Q |
| |
|
|||||||| |||||||| || || ||| |||||||||||||||||||||||||||| || || | |||| ||| || | | ||||||| | | |
|
|
| T |
36989153 |
caaagagaccaaaatcttcaactgcaccgaagaggacacaacttgccttggaagctaaaacaaagaactagtgcagaaattagaaagagggtttatgttt |
36989252 |
T |
 |
| Q |
121 |
gtcctgagcccacatgcgttcatcatgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtgagaagaaatg |
220 |
Q |
| |
|
||||||| || |||| || || ||| ||||| |||| ||||||||||| || ||||| ||||| || |||| | | | || ||||||||||| || || |
|
|
| T |
36989253 |
gtcctgaaccttcatgtgtacaccataaccctgcaagagcacttggtgatcttactggaattaaaaagcacttttgtagaaagcatggtgagaaaaagtg |
36989352 |
T |
 |
| Q |
221 |
gaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattc |
277 |
Q |
| |
|
||| ||||||||||| |||||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
36989353 |
gaaatgtgataagtgttctaagaaatatgctgttcaatctgattggaaagctcattc |
36989409 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 328
Target Start/End: Complemental strand, 28496296 - 28496112
Alignment:
| Q |
144 |
catgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtgagaagaaatggaagtgtgataagtgctctaaga |
243 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || || || || |||| | | || || ||||||||||| ||||| ||||| || || || || | |
|
|
| T |
28496296 |
catgacccttcaagagcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaa |
28496197 |
T |
 |
| Q |
244 |
agtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtgtgactgtggcactctcttctc |
328 |
Q |
| |
|
| ||||| || |||||||||||||| || ||| | || || ||||| || |||||||| | |||||||||||||| |||||||| |
|
|
| T |
28496196 |
aatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctc |
28496112 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 28496432 - 28496365
Alignment:
| Q |
11 |
caaagggttccaaagagagcaaaatctacagcttcacagaagaggacacaacttgccttggaagctta |
78 |
Q |
| |
|
|||||||||||||||||| ||||| || || || || ||||||||||||||| | || |||||||||| |
|
|
| T |
28496432 |
caaagggttccaaagagatcaaaaccttcaactacatagaagaggacacaaccttccatggaagctta |
28496365 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 5788853 - 5788729
Alignment:
| Q |
204 |
catggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatata |
303 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||| || ||||| ||||||||||||||||||||||| || ||||| || ||||||||||| |||||||||| |
|
|
| T |
5788853 |
catggtgagaagaagtggaaatgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagagaatata |
5788754 |
T |
 |
| Q |
304 |
ggtgtgactgtggcactctcttctc |
328 |
Q |
| |
|
| ||||||||||| || |||||||| |
|
|
| T |
5788753 |
gatgtgactgtggaaccctcttctc |
5788729 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 33186728 - 33186795
Alignment:
| Q |
201 |
aaacatggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaa |
268 |
Q |
| |
|
|||||||||||||| || ||||| ||||| || || |||||||| ||||||||||||||||||||||| |
|
|
| T |
33186728 |
aaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaa |
33186795 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 5789046 - 5789002
Alignment:
| Q |
11 |
caaagggttccaaagagagcaaaatctacagcttcacagaagagg |
55 |
Q |
| |
|
||||||||| |||||||| |||||||| || |||||||||||||| |
|
|
| T |
5789046 |
caaagggtttcaaagagatcaaaatcttcaacttcacagaagagg |
5789002 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 328
Target Start/End: Original strand, 40749383 - 40749510
Alignment:
| Q |
201 |
aaacatggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaat |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| || ||||| ||||| || |||||||||||||| || || |||| |||||||| || ||||||| |
|
|
| T |
40749383 |
aaacatggcgagaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattggaaagctcacactaaaacttgtggtactagagaat |
40749482 |
T |
 |
| Q |
301 |
ataggtgtgactgtggcactctcttctc |
328 |
Q |
| |
|
||| |||||| ||||| || |||||||| |
|
|
| T |
40749483 |
ataagtgtgattgtggtacactcttctc |
40749510 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 44150936 - 44150863
Alignment:
| Q |
198 |
cgcaaacatggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggc |
271 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||| | |||||||||||||| ||||||||||| |
|
|
| T |
44150936 |
cgcaaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggc |
44150863 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 40749193 - 40749264
Alignment:
| Q |
11 |
caaagggttccaaagagagcaaaatctacagcttcacagaagaggacacaacttgccttggaagcttaagca |
82 |
Q |
| |
|
|||||| ||||||||||| || ||||| |||||||| |||||||| |||||| | || |||||||| ||||| |
|
|
| T |
40749193 |
caaaggattccaaagagatcagaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagca |
40749264 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 207 - 329
Target Start/End: Original strand, 40040788 - 40040910
Alignment:
| Q |
207 |
ggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggt |
306 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||| ||||| ||||||||| | ||| || || | |
|
|
| T |
40040788 |
ggtgagaagaagtggaagtgtgataagtgttctaagaaatatgcagttcaatctgattggaaggctcatagtaagatttgtggcactaaagagtacagat |
40040887 |
T |
 |
| Q |
307 |
gtgactgtggcactctcttctcc |
329 |
Q |
| |
|
|||| |||||||| || |||||| |
|
|
| T |
40040888 |
gtgattgtggcacactattctcc |
40040910 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 328
Target Start/End: Original strand, 42898297 - 42898418
Alignment:
| Q |
207 |
ggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggt |
306 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||||||||| |||||||| || ||||| || || || || || |||||||| |||||||| || | |
|
|
| T |
42898297 |
ggtgagaagaagtggaaatgtgacaagtgctctaagaagtatgcagttcaatcagactggaaagctcactccaaaacctgtggcacaagagaatacagat |
42898396 |
T |
 |
| Q |
307 |
gtgactgtggcactctcttctc |
328 |
Q |
| |
|
|||||||||| || |||||||| |
|
|
| T |
42898397 |
gtgactgtggaaccctcttctc |
42898418 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 325
Target Start/End: Complemental strand, 38895990 - 38895866
Alignment:
| Q |
201 |
aaacatggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaat |
300 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||||||| || |||||||||||||| |||||||| ||||| || ||||||||||| || ||||||| |
|
|
| T |
38895990 |
aaacacggtgagaagaagtggaagtgtgagaagtgctcaaaattttatgctgttcaatcggattggaaagcacactcaaagacttgtggtactagagaat |
38895891 |
T |
 |
| Q |
301 |
ataggtgtgactgtggcactctctt |
325 |
Q |
| |
|
| | ||||| ||||||||| |||| |
|
|
| T |
38895890 |
acaaatgtgattgtggcactatctt |
38895866 |
T |
 |
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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 22085639 - 22085572
Alignment:
| Q |
201 |
aaacatggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaa |
268 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||||||||||| |
|
|
| T |
22085639 |
aaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaa |
22085572 |
T |
 |
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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 144 - 325
Target Start/End: Complemental strand, 30518338 - 30518157
Alignment:
| Q |
144 |
catgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtgagaagaaatggaagtgtgataagtgctctaaga |
243 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||||||| || || |||| | | | || |||||||| ||||| ||||||||||| |||||||| || |
|
|
| T |
30518338 |
catgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaac |
30518239 |
T |
 |
| Q |
244 |
agtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtgtgactgtggcactctctt |
325 |
Q |
| |
|
||||||||||| || |||||||| || || || || || ||||| || |||||||| | ||||||||||| ||| |||| |
|
|
| T |
30518238 |
gttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatctt |
30518157 |
T |
 |
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