View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11855_low_21 (Length: 320)
Name: NF11855_low_21
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 39 - 310
Target Start/End: Original strand, 38857619 - 38857890
Alignment:
| Q |
39 |
gtaatacacaacttacgtccgagcggttacttgatcacgtaaaacttcacaagcctaacttaatgnnnnnnnnnnnnncaaatcaagattgaggatacta |
138 |
Q |
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| T |
38857619 |
gtaatacacaacttacgtccgagcggttacttgatcacgtaaaacttcacaagcctaacttaatgaaaaaaataaaaacaaatcaagattgaggatacta |
38857718 |
T |
|
| Q |
139 |
ggccataacccaatgaaacnnnnnnntaagaattaaagagagcgaaaaatagaaacatccttcgaatgagtgttctaaccgctgccggattttctcagat |
238 |
Q |
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| T |
38857719 |
ggccataacccaatgaaacaaaaaaataagaattaaagagagcgaaaaatagaaacatccttcgaatg-gtgttctaactgctgccggattttctcggat |
38857817 |
T |
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| Q |
239 |
ctttnnnnnnnnnnnnnntaa-tcctaacacttggaaagtatttagtaaaattggcttctatgtcatcctttg |
310 |
Q |
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||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38857818 |
cttaaaaaaaaaataaaaaaattcctaactcttggaaagtatttagtaaaattggcttctatgtcatcctttg |
38857890 |
T |
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