View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11855_low_23 (Length: 314)
Name: NF11855_low_23
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 11664426 - 11664712
Alignment:
| Q |
17 |
cacgtttcactgggaacaatggattaaacaaaaatattggaattgtggagaatttggccctccctagcttgagctgcacaagtggaattgatggagaagg |
116 |
Q |
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| T |
11664426 |
cacgtttcattgggaacaatggattaaacaaaaatattggaattgtggagaatttggccctccctagcttgagctgcacaagtggaattgatggagaagg |
11664525 |
T |
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| Q |
117 |
agttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatacttcaatatgaaaatatttataattttattgataagaataaag---tatc |
213 |
Q |
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| T |
11664526 |
agttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatacttcaatatgaaaaaatttataattttattgataagaataaagtaatatc |
11664625 |
T |
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| Q |
214 |
aaatcatcaaataaattgaatgattttggtttaaccttaaaaaattgtgtaccatgtctctttannnnnnncttgttatgtattcat |
300 |
Q |
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| T |
11664626 |
aaatcatcaaataaatggaatgattttggtttaaccttaaaaaattgtgtatcatgtctctttatttttttcttgttatgtattcat |
11664712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 7344070 - 7343811
Alignment:
| Q |
17 |
cacgtttcactgggaacaatggattaaacaaaaatattggaattgtggagaatttggccctccctagcttgagctgcacaagtggaattgatggagaagg |
116 |
Q |
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| T |
7344070 |
cacgtttcattggaaacactggattaaacaaagatattggaactatggagaatttggccctccctagcttgaaatgcacaagtggaattgatggagaagg |
7343971 |
T |
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| Q |
117 |
agttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatactt-caatatgaaaatatttataattttattgataagaataaagtatcaa |
215 |
Q |
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| T |
7343970 |
agttgtctgcaaaagataatttcattgtccaaaagaggatgctgatgatacttcccata-gaaaa-aattataattttattaataagaataaagtatcaa |
7343873 |
T |
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| Q |
216 |
atcatcaaataaattgaatgattttggtttaaccttaaaaaattgtgta-ccatgtctcttt |
276 |
Q |
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| T |
7343872 |
atcatcaaataacttgaatgattttggtttaaccttaaaaaaatgtgtattcatgtctcttt |
7343811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 11656013 - 11656091
Alignment:
| Q |
61 |
gtggagaatttggccctccctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaagataatttt |
139 |
Q |
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| T |
11656013 |
gtggagaatttgagtctccctagcatgagttgtacaagtggaattgatgggcaaggagttgtatgcaggagataatttt |
11656091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 11669796 - 11669858
Alignment:
| Q |
76 |
ctccctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaagataattt |
138 |
Q |
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| T |
11669796 |
ctccctagcatgagttgcacaagtggtgttgatggagaaggagttgtttgcaggagataattt |
11669858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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