View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11855_low_24 (Length: 312)
Name: NF11855_low_24
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 6960159 - 6959873
Alignment:
| Q |
9 |
tgatatgtcctcccattacataaacctcctgaaacattttggaactgttatgccttatcactacaaacaagttataatcatcttaattactaacattttt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6960159 |
tgatatgtcctcccattacataaacctcctgaaacattttggaactgttatgccttatcactacaaacaagttataatcatcttaattactaacattttt |
6960060 |
T |
|
| Q |
109 |
catggctagaagtttgaaaaacaaatgtgaagataacaaacctgaattatggagcttatgtttttaattgatacaaccttcgccaaattagtcaacggtc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6960059 |
catggctagaagtttgaaaaacaaatgtgaagataacaaacctgaattatggagcttatgtttttaattgatacaaccttcgccaaattagtcaacggtc |
6959960 |
T |
|
| Q |
209 |
cattggttaatactgtaaccttagaccctggtttcaatgtttgcaatatagattcccaaatttccatagcttgcggttgtctgagtt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6959959 |
cattggttaatactgtaaccttagaccctggtttcaatgtttgcaatatagattcccaaatttccatagcttgcggttgtctgagtt |
6959873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 126 - 295
Target Start/End: Complemental strand, 6967460 - 6967291
Alignment:
| Q |
126 |
aaaacaaatgtgaagataacaaacctgaattatggagcttatgtttttaattgatacaaccttcgccaaattagtcaacggtccattggttaatactgta |
225 |
Q |
| |
|
||||||||||| |||||||| ||||||||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6967460 |
aaaacaaatgtaaagataacttacctgaattctggagcttatgtttttaactgatacaacctttgccaaattagtcaagggtccattggttaatactgta |
6967361 |
T |
|
| Q |
226 |
accttagaccctggtttcaatgtttgcaatatagattcccaaatttccatagcttgcggttgtctgagtt |
295 |
Q |
| |
|
| ||||||||||||||||| ||||||||||| ||| ||||||||||||||| || | ||||| ||||||| |
|
|
| T |
6967360 |
atcttagaccctggtttcagtgtttgcaataaagactcccaaatttccataactcgtggttgcctgagtt |
6967291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 6967589 - 6967524
Alignment:
| Q |
9 |
tgatatgtcctcccattacataaacctcctgaaacattttggaactgttatgccttatcactacaa |
74 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
6967589 |
tgatatgtcctcccacaacataaacctcctgaaacattttgaaactgttatgcctcatcactacaa |
6967524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 281
Target Start/End: Original strand, 181134 - 181406
Alignment:
| Q |
9 |
tgatatgtcctcccattacataaacctcctgaaacattttggaactgttatgccttatcactacaaacaagttataatcatcttaattactaacattttt |
108 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
181134 |
tgatatgtcctcccattacataaaccacctgaaacatttcggaactgttatgtcttatcactacaaacaagttataaccatcttaattactaacattttt |
181233 |
T |
|
| Q |
109 |
catggctagaagtttgaaaaacaaatgtgaagataacaaacctgaattatggagcttatgtttttaattgatacaaccttcgccaaattagtcaacggtc |
208 |
Q |
| |
|
||||| |||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| |
|
|
| T |
181234 |
catggatagaagtttgaaaaacaagtgtgacgataactaacctaaattatggagcttatgtttttaactgatacaacctttgccaaattagtcaagggtc |
181333 |
T |
|
| Q |
209 |
cattggttaatactgtaaccttagaccctggtttcaatgtttgcaatatagattcccaaatttccatagcttg |
281 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
181334 |
cattggttaatactgtaatcttagactctggtttcgatgtttgcaataaaaattcccaaatttccatagcttg |
181406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 295
Target Start/End: Original strand, 49101145 - 49101280
Alignment:
| Q |
160 |
gagcttatgtttttaattgatacaaccttcgccaaattagtcaacggtccattggttaatactgtaaccttagaccctggtttcaatgtttgcaatatag |
259 |
Q |
| |
|
||||||||||| | ||||| |||||||| ||||||||||| || |||||||||||||||||||||| || ||||||||||||| ||||||||||| || |
|
|
| T |
49101145 |
gagcttatgttagtcattgaaacaacctttgccaaattagttaagggtccattggttaatactgtaatattggaccctggtttcattgtttgcaatacag |
49101244 |
T |
|
| Q |
260 |
attcccaaatttccatagcttgcggttgtctgagtt |
295 |
Q |
| |
|
| ||||||| |||||||||| | |||||||| |||| |
|
|
| T |
49101245 |
actcccaaacttccatagctagtggttgtctaagtt |
49101280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 295
Target Start/End: Original strand, 49113088 - 49113235
Alignment:
| Q |
148 |
acctgaattatggagcttatgtttttaattgatacaaccttcgccaaattagtcaacggtccattggttaatactgtaaccttagaccctggtttcaatg |
247 |
Q |
| |
|
||||||||| | |||||||| ||||| | ||| ||||| || |||||||||||||| ||||| ||||||| ||| |||| || ||||||||||||| || |
|
|
| T |
49113088 |
acctgaattctagagcttatatttttcactgaaacaacgtttgccaaattagtcaagggtccgttggttagtacagtaatattggaccctggtttcattg |
49113187 |
T |
|
| Q |
248 |
tttgcaatatagattcccaaatttccatagcttgcggttgtctgagtt |
295 |
Q |
| |
|
||||||||| ||| ||||||| |||||||||| | |||||||| |||| |
|
|
| T |
49113188 |
tttgcaatacagactcccaaacttccatagctagtggttgtctaagtt |
49113235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University