View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11855_low_27 (Length: 303)
Name: NF11855_low_27
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 8309289 - 8309097
Alignment:
| Q |
1 |
tcatattgattatatattaatttgcttccgttttctttcatttgcaggaagatagatataaattagcatcattgagtctggtggtgaaagaactcacgga |
100 |
Q |
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| T |
8309289 |
tcatattgattatatattaatttgcttccgttttctttcatttgcaggaagatagatataaattagcatcattgagtctggtggtgaaagaactcacgga |
8309190 |
T |
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| Q |
101 |
agtgtgttttcttcaatggttgaacgactgaatgctgaaattcaaactcttttggggcatttaaagtatcttgtttttaataaattacgctgg |
193 |
Q |
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| T |
8309189 |
agtgtgttttcttcaatggttgaacgactgaatgctgaaattcaaactcttttggggcatttaaagtatcttgtttttaataaattacgctgg |
8309097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 224 - 293
Target Start/End: Complemental strand, 8309060 - 8308991
Alignment:
| Q |
224 |
ataacatcgctatttcttgttgcctatccttcatcatcaaagtttgcaatttaaagtatgaacacctttg |
293 |
Q |
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| T |
8309060 |
ataacatcgctatttcttgttgcctatccttcatcatcaaagtttgcaatttaaagtatgaacacctttg |
8308991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 8299812 - 8299744
Alignment:
| Q |
7 |
tgattatatattaatttgcttccgttttctttcatttgcaggaagatagatataaattagcatcattga |
75 |
Q |
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| T |
8299812 |
tgattatgtattgttttccttccgttgtctttcatttgcaggtagatagatatagatcagcatcattga |
8299744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 18281723 - 18281775
Alignment:
| Q |
233 |
ctatttcttgttgcctatccttcatcatcaaagtttgcaatttaaagtatgaa |
285 |
Q |
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| T |
18281723 |
ctatttcttgttgcctctccctcatcatcaaagtctggaaattaaagtatgaa |
18281775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 168
Target Start/End: Complemental strand, 27662813 - 27662695
Alignment:
| Q |
50 |
agatagatataaattagcatcattgagtctggtggtgaaagaactcacggaagtgtgttttcttcaatggttgaacgactgaatgctgaaattcaaactc |
149 |
Q |
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|||||| |||| ||||||||||||||||||||||| |||||||| || | ||||||| ||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
27662813 |
agataggtatagattagcatcattgagtctggtggagaaagaacacaagcaagtgtggtttcttcaatggtcgaacgagtgaatgctgaaattcaaactc |
27662714 |
T |
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| Q |
150 |
ttttggggcatttaaagta |
168 |
Q |
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| T |
27662713 |
ttttggggcatttaaagta |
27662695 |
T |
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