View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11855_low_28 (Length: 294)
Name: NF11855_low_28
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_low_28 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 102 - 294
Target Start/End: Original strand, 25333854 - 25334046
Alignment:
| Q |
102 |
atgtttgatttctgactcgtgcgtatgtatgaaagttcagttgcgatagaaaaacacatcttatatgcttcacaagtttctcaatagtgattagtcattt |
201 |
Q |
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| T |
25333854 |
atgtttgatttctgactcgtgcgtatgtatgaaagttcagttgcgatagaaaaacacatcttatatacttcacaagtttctcaatagtgattagtcattt |
25333953 |
T |
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| Q |
202 |
ttacatagtgttggaaatttcagactaataagacgataacctaaaaaatgtaaataacatggttaaccaaagatcggatacaaaataaagatc |
294 |
Q |
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| T |
25333954 |
ttacatagtgttggaaattttggactaataagacgataacctaaaaaatgtaaataacatggttaaccaaagatcggatacaaaataaagatc |
25334046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 25333697 - 25333758
Alignment:
| Q |
6 |
agaagcatagggggtgcaagaatgggactaattgtacaagtacaaggtagcatcaataagta |
67 |
Q |
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| T |
25333697 |
agaagcataaggggtgcaagaatgggactaatagtacaagtacaaggtagcatcaataagta |
25333758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 25333790 - 25333839
Alignment:
| Q |
65 |
gtagtaggagatttggaccactttagcaattggttagatgtttgatttct |
114 |
Q |
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| T |
25333790 |
gtagtaggagatttggaccactttagcaattggttagatgtttgatttct |
25333839 |
T |
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