View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11855_low_29 (Length: 251)
Name: NF11855_low_29
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 39188406 - 39188173
Alignment:
| Q |
1 |
aaagagaagatagaagctgctcataagaagaaagaaaaaggggaatcattgcactgacgtcgtgaatatgcaagagcttctaaaagatttgagaaggtaa |
100 |
Q |
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| T |
39188406 |
aaagagaagtgagaagctgctcataagaagaaagaaaaaggggaatcattgcaccgacgtcgtgaatatgcaagagcttctaaaagatttgagaaggtaa |
39188307 |
T |
|
| Q |
101 |
ccaagttacattgatatatttcaccctcatccactacagtgcgttaggacactacacttgggcctatggtccatggtgagccaagcattgggcaaatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39188306 |
ccaagttacattgatatatttcaccctcatccactacagtgcgttaggacactacacttgggcctatggtccatggtgagccaagcattgggcaaatctt |
39188207 |
T |
|
| Q |
201 |
gttagagttggttaggagcatggtgctttgttta |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
39188206 |
gttagagttggttaggagcatggtgctttgttta |
39188173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 2875868 - 2875793
Alignment:
| Q |
63 |
tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccactaca |
138 |
Q |
| |
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| T |
2875868 |
tgaatatgcaagagcttctaaaagatttcagaaggtaaccaggttacattaatatatttcaccatcatccactaca |
2875793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 2795862 - 2795937
Alignment:
| Q |
63 |
tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccactaca |
138 |
Q |
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| T |
2795862 |
tgaatatgcaagagcttctaaaagatatcagaaggtaaccatgttacattaatatatttcaccatcatccactaca |
2795937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 3144920 - 3144982
Alignment:
| Q |
63 |
tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcacc |
125 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| |
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| T |
3144920 |
tgaatatgcaagagcttctaaaagatttcagaaggtaaccaggttacattaatatatttcacc |
3144982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 3159501 - 3159576
Alignment:
| Q |
63 |
tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccactaca |
138 |
Q |
| |
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|||||||||||||||||| || |||||| |||||||||||| || ||||| |||||||||||| |||||||||||| |
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| T |
3159501 |
tgaatatgcaagagcttccaagagatttcagaaggtaaccaggtaacattaatatatttcaccatcatccactaca |
3159576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 4416030 - 4416116
Alignment:
| Q |
68 |
atgcaagagcttctaaaagatttgagaaggtaaccaag-ttacattgatatatttcaccctcatccactacagtgcgttaggacact |
153 |
Q |
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||||||| ||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||| || | ||||||||| |
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| T |
4416030 |
atgcaagggcttctaaaagatttatgaaggtaactgaggttacattgatatatttcaccctcatccactacaatgtgataggacact |
4416116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 2890348 - 2890311
Alignment:
| Q |
63 |
tgaatatgcaagagcttctaaaagatttgagaaggtaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| |
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| T |
2890348 |
tgaatatgcaagagcttctaaaagatttcagaaggtaa |
2890311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 3494399 - 3494363
Alignment:
| Q |
65 |
aatatgcaagagcttctaaaagatttgagaaggtaac |
101 |
Q |
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| T |
3494399 |
aatatgcaaaagcttctaaaagatatgagaaggtaac |
3494363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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