View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11855_low_3 (Length: 914)
Name: NF11855_low_3
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 654; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 1 - 754
Target Start/End: Original strand, 6174254 - 6175006
Alignment:
| Q |
1 |
aaaagcaatcaacaaattcgaaatgtgcaaatatagatagacnnnnnnntaagaactgtaaagagaaaaataacatacatgcaccccagaacaacccttc |
100 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6174254 |
aaaaacaatcaacaaatttgaaatgtgcaaatatagatagacaaaaaaataagaactgtaaagagaaaaataacatacatgcaccccagaacaacccttc |
6174353 |
T |
|
| Q |
101 |
catctgaacagatctcactgcttcttcgagcttcttcatgtcggtttcatcatcccatggcttcacatccaacagtacagatgattttccacctgcaatg |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6174354 |
catctgaacagatctcactgcttcttcgagcttcttcatgtcggtttcatcatcccatggcttcacatccaacagtacagatgattttccacctggaatg |
6174453 |
T |
|
| Q |
201 |
gaatcagcagaaaaccaacacaataaattgatgtccagccggatttcaacaaattatgagtacatgatacgataaacttactttctttctttttgccaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6174454 |
gaatcagcagaaaaccaacacaataaattgatgtccagccggatttcaacaaattatgagtacatgatacgataaacttactttctttctttttgccaga |
6174553 |
T |
|
| Q |
301 |
tgccttcacagctgctgcccgatcctcagctgccttcttctcttcctcagtctcttcgccaaacaaatcaacatcgtcatcatcatcgtcctcggcttca |
400 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6174554 |
tgccttcacagctgctgcccgttcctcagctgccttcttctcttcctcagtctcttcgccaaacaaatcaacatcgtcatcatcatcgtcctcggcttca |
6174653 |
T |
|
| Q |
401 |
gcagcctttgtgtcagaaactggaggagtggcaacagcatcttcagccacaagagaagattccacggtgacaccagatccctcaccagaaacaccactac |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6174654 |
gcagcctttgtgtcagaaactggaggagtggcaacagcatcttcagccacaagagaagattccacggtgacaccagatccctcaccagaaacaccactac |
6174753 |
T |
|
| Q |
501 |
agacacaatactcgattaaaattcnnnnnnnctacacaaatgtagaataaaatttgaaaaagctacacaaataatgcat-atacaattaattttcaatgt |
599 |
Q |
| |
|
||||| |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
6174754 |
agacaatatacccgatt--aatttgaaaaaactacacaaatgtagaataaaatttgaaaaagctacacaaataatgcataatacaattaattttcaatgt |
6174851 |
T |
|
| Q |
600 |
ttgcgtgtaattgacaaagatcggaaggggaactcacgaaattctcaacaaagcatcaatgtgcttgtaccacctagcaacattcccatattcatatgat |
699 |
Q |
| |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6174852 |
ttccgtgtaattgacaaagattggaaggggaactcacgaaattctcaacaaagcatcaatgtgcttgtaccacctagcaacattcccatattcatatgat |
6174951 |
T |
|
| Q |
700 |
ggaactgatggcaaagctgaatagacagtgatgtcatcctttgaagcttggtacc |
754 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6174952 |
ggaactgatggcaaagctgaatagacagtgatgtcatcctttgaagcttggtacc |
6175006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 834 - 897
Target Start/End: Original strand, 6175086 - 6175149
Alignment:
| Q |
834 |
taacctacccagtgatgtaactgcgtgagagaaggtactcgtcaagcttcttcaagccagattc |
897 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6175086 |
taacctacccagtgatgtaactgcgtgagagaaggtactcgtcaagcttcttcaagccagattc |
6175149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 61 - 523
Target Start/End: Original strand, 25250004 - 25250471
Alignment:
| Q |
61 |
aagagaaaaataacatacatgcaccccagaacaacccttccatctgaacagatctcactgcttcttcgagcttcttcatgtcggtttcatcatcccatgg |
160 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |
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| T |
25250004 |
aagagacaaataacatacatgcaccccaaaacaacccttccaactgaacagatctcactgcttcttcaagtttcttcatgtcggtctcatcatcccatgg |
25250103 |
T |
|
| Q |
161 |
cttcacatccaacagtacagatgattttccacctgc-aatggaatcagcagaaaaccaacacaataaattgatgtccagccggatttcaacaaattatga |
259 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| |||| ||||||||||||||||| || |||||||||||||| || |||| || ||||| || |
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|
| T |
25250104 |
cttcacatccaacaatacagatgatttcccacctgagaatgcaatcagcagaaaaccaatactctaaattgatgtccaaccagattcgaaataattacga |
25250203 |
T |
|
| Q |
260 |
gtacatga--tacgata--aacttactttctttctttttgccagatgccttcacagctgctgcccgatcctcagctgccttcttctcttcctcagtctct |
355 |
Q |
| |
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| | |||| ||| | | |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
25250204 |
ggatatgagatacaacagaaacttactctctttctttttgccagatgccttcacggctgctgcccgttcctcagctgccttcttctcttcctcagtctct |
25250303 |
T |
|
| Q |
356 |
tcgccaaacaaatcaacatcgtcatcatcatcgtcctcggcttcagcagcctttgtgtcagaaactggaggagtggcaacagcatcttcagccacaagag |
455 |
Q |
| |
|
|| |||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
25250304 |
tcaccaaacaaatcaacatcgtcatcatcttcatcctcagcttcagcggcctttgtgtcagaaactggaggagtggcaacagtctcttcagccacaagag |
25250403 |
T |
|
| Q |
456 |
aagattccacggtgacaccagatccctcaccagaaacaccactacagacacaatactcgattaaaatt |
523 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||| | || ||||||||| |
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|
| T |
25250404 |
aagattccacagtgacaccagatccctcaccagaaacaccactacaatcacaaaaatcaattaaaatt |
25250471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 607 - 754
Target Start/End: Original strand, 25250579 - 25250726
Alignment:
| Q |
607 |
taattgacaaagatcggaaggggaactcacgaaattctcaacaaagcatcaatgtgcttgtaccacctagcaacattcccatattcatatgatggaactg |
706 |
Q |
| |
|
||||||||||||| | |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
25250579 |
taattgacaaagacggtaaggggaacttacgcaattctcaacaaagcatcaatgtgcttgtaccacctagcaacattcccatattcatatgatggaacgg |
25250678 |
T |
|
| Q |
707 |
atggcaaagctgaatagacagtgatgtcatcctttgaagcttggtacc |
754 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
25250679 |
atggcaaagctgaataaacagtgatgtcatcctttgaagcttggtacc |
25250726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 835 - 897
Target Start/End: Original strand, 25250830 - 25250892
Alignment:
| Q |
835 |
aacctacccagtgatgtaactgcgtgagagaaggtactcgtcaagcttcttcaagccagattc |
897 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |
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|
| T |
25250830 |
aacctacccagtgatgtaactgcgtgtaagaaggtactcatcaagcttcttcaacccagattc |
25250892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 622 - 705
Target Start/End: Original strand, 19595363 - 19595446
Alignment:
| Q |
622 |
ggaaggggaactcacgaaattctcaacaaagcatcaatgtgcttgtaccacctagcaacattcccatattcatatgatggaact |
705 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| |||| |||| ||| ||| |||||| |||||||||||||||||||| |
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|
| T |
19595363 |
ggaagaggaacttacgaaattctcaacaaagcatcaatatgctagtactaccaagccacattcacatattcatatgatggaact |
19595446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 622 - 705
Target Start/End: Complemental strand, 19752040 - 19751957
Alignment:
| Q |
622 |
ggaaggggaactcacgaaattctcaacaaagcatcaatgtgcttgtaccacctagcaacattcccatattcatatgatggaact |
705 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| |||| |||| ||| ||| |||||| |||||||||||||||||||| |
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|
| T |
19752040 |
ggaagaggaacttacgaaattctcaacaaagcatcaatatgctagtactaccaagccacattcacatattcatatgatggaact |
19751957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 648 - 720
Target Start/End: Complemental strand, 19584655 - 19584583
Alignment:
| Q |
648 |
caaagcatcaatgtgcttgtaccacctagcaacattcccatattcatatgatggaactgatggcaaagctgaa |
720 |
Q |
| |
|
||||||| |||| ||||||||||||| ||| ||||| ||||||||||| |||| |||| ||| | |||||||| |
|
|
| T |
19584655 |
caaagcagcaatatgcttgtaccacccagccacatttccatattcataggatgaaacttatgtcgaagctgaa |
19584583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 38468899 - 38468853
Alignment:
| Q |
123 |
tcttcgagcttcttcatgtcggtttcatcatcccatggcttcacatc |
169 |
Q |
| |
|
||||| |||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
38468899 |
tcttccagcttcttcatgtctgtctcatcatcccatggcttaacatc |
38468853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 38482202 - 38482153
Alignment:
| Q |
120 |
gcttcttcgagcttcttcatgtcggtttcatcatcccatggcttcacatc |
169 |
Q |
| |
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|||||||| ||||||||||| || || ||||||||||||||||| ||||| |
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|
| T |
38482202 |
gcttcttccagcttcttcatatctgtctcatcatcccatggcttaacatc |
38482153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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