View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11855_low_33 (Length: 218)
Name: NF11855_low_33
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 9487271 - 9487093
Alignment:
| Q |
20 |
cgtagtagattacattttgctaagtaatctcatactccaaacatcttgtaannnnnnngaaaatcaaacgacttatttaaaataagaaatattatgttga |
119 |
Q |
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| T |
9487271 |
cgtagtagattacattttgctaagtaatctcatactccaaacatcttgtaatttttttgaaaatcaaacgacttatttaaaataagaaatattatgttga |
9487172 |
T |
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| Q |
120 |
aggagaagatataaaatatttgttaaaagaaaccatcaaaatcccatggaaatccttatcgtaatctctctcactctcc |
198 |
Q |
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| T |
9487171 |
aggagaagatataaaatatttgttaaaagaaaccatcaaaatcccatggaaatccttatcgtaatctctctcactctcc |
9487093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 14681395 - 14681220
Alignment:
| Q |
25 |
tagattacattttgctaagtaatctcatactccaaacatcttgtaannnnnnngaaaatcaaacgacttatttaaaataagaaatattatgttgaaggag |
124 |
Q |
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|||||||| |||| |||||||||||| |||||||||||||||||| ||||||||||| | | ||| |||||||||||||||||||||| ||| |
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| T |
14681395 |
tagattacgtttttctaagtaatctcttactccaaacatcttgtacactctttgaaaatcaaacaattcattaaaaataagaaatattatgttgagtgag |
14681296 |
T |
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| Q |
125 |
aagatataaaatatttgttaaaagaaaccatcaaaatcc--catggaaatccttatcgtaatctctctcactctcc |
198 |
Q |
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| T |
14681295 |
aaggcataaaatatttgttaaaagaaaccatcaagatccttattggaaatccttatcgtaatctctctcactctcc |
14681220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 78 - 190
Target Start/End: Complemental strand, 27723638 - 27723524
Alignment:
| Q |
78 |
gaaaatcaaacgacttatttaaaataagaaatattatgttgaaggagaagatataaaatatttgttaaaagaaaccatcaaaatcc--catggaaatcct |
175 |
Q |
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||||||||||||||| ||||| ||||||||||||| ||||||| |||||| |||| ||||||||||||||||||||||||| |||| | |||||||||| |
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| T |
27723638 |
gaaaatcaaacgactcatttataataagaaatattgtgttgaatgagaaggtatacaatatttgttaaaagaaaccatcaagatccttcttggaaatcct |
27723539 |
T |
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| Q |
176 |
tatcgtaatctctct |
190 |
Q |
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||||||||||||||| |
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| T |
27723538 |
tatcgtaatctctct |
27723524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 27723725 - 27723677
Alignment:
| Q |
21 |
gtagtagattacattttgctaagtaatctcatactccaaacatcttgta |
69 |
Q |
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||||||||||||||||| |||||||||||||||||||||| || ||||| |
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| T |
27723725 |
gtagtagattacatttttctaagtaatctcatactccaaagatattgta |
27723677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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