View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11855_low_35 (Length: 206)
Name: NF11855_low_35
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 27442761 - 27442593
Alignment:
| Q |
20 |
aatatgtgtatatttgtcaaggattggatgattggtttgcgagggacaaaatttggtatccattgttcttttataaattatttttgtccatgaagttgaa |
119 |
Q |
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| T |
27442761 |
aatatgtgtatatttgtcaaggattggatgattggtttgcgagggacaaaatttggtatccattgttcttttataaattatttttgtccatgaagttgaa |
27442662 |
T |
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| Q |
120 |
taaaaacatattgaagctgtgtaatttaatttttctgtgttagactttcggtattagcaatgtttcctctg |
190 |
Q |
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| T |
27442661 |
t--aaacttattgaagttgtgtaatttaatttttctgtgttagactttcggtattagcaatgtttcctctg |
27442593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 27433866 - 27434007
Alignment:
| Q |
20 |
aatatgtgtatatttgtcaaggattggatgattggtttgcgagggacaaaatttggtatccattgttcttttataaattatttttgtccatgaagttgaa |
119 |
Q |
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| T |
27433866 |
aatatgtgtatattagtcaaggattggatgattggtttgcgagggacaaaatttggtctccattgatcttctataaattatttttgtccatgaagttgaa |
27433965 |
T |
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| Q |
120 |
taaaaacatattgaagctgtgtaatttaatttttctgtgttaga |
163 |
Q |
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| T |
27433966 |
t--aaacttattgaagttgtgtagtttaatttttccgtgttaga |
27434007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 175
Target Start/End: Original strand, 27434051 - 27434138
Alignment:
| Q |
86 |
tcttttataaattatttttgtccatgaagttgaataaaaacatattgaagctgtgtaatttaatttttctgtgttagactttcggtatta |
175 |
Q |
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| T |
27434051 |
tcttttataatttattgttgcccgtgaagttgaatgaatt--tattgaagttgtgtaatttaatttttccgtgttagacttttggtatta |
27434138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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