View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11855_low_5 (Length: 751)
Name: NF11855_low_5
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Original strand, 3862566 - 3863131
Alignment:
| Q |
1 |
taaggtgattggactggagagggatgaagattatgtctatgtgatgttgtctaatatgtatgcatcttttggaagatgggaagatgttaatgtaattagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3862566 |
taaggtgattggactggagagggatgaagattatgtctatgtgatgttgtctaatatgtatgcatcttttggaagatgggaagatgttaatgtaattagg |
3862665 |
T |
|
| Q |
101 |
agtctcatgagtaagaaaagggttaggaaagaagcaggttctagctggatagaagtaaatagataactttgtcccatatgaaactaccgtatagaagcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3862666 |
agtctcatgagtaagaaaagggttaggaaagaagcaggttctagctggatagaagtaaatagataactttgtcccatatgaaattaccgtatagaagcat |
3862765 |
T |
|
| Q |
201 |
gtggctgatcctaaatacttatttgctttcttccagcttactgaacaacggttagcaacgtcccaaagtatagttctgattacaaaaaaccgtaagaatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3862766 |
gtggctgatcctaaatacttatttgctttcttccagcttactgaacaacagttagcaacgtcccaaagtatagttctgattacaaaaaaccgtaagaatt |
3862865 |
T |
|
| Q |
301 |
agccaaggtggtctcgcctaactcaacaggctcgattaagtcagaaaactcaagaaaaattttataggtccaattccttgatatgaatgttaacagagtn |
400 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3862866 |
agccaaggtggtctcgcctaactcaataggctcgattaagtcagaaaactcaagaaattttttataggttcaattccttgatatgaatgttaacagagt- |
3862964 |
T |
|
| Q |
401 |
nnnnnngcatcaaactacatactttgaatttctgagagtttcatgattaaaaggaatatggaaagaatcaatgaatatagcatcttatccaaccttacaa |
500 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3862965 |
aaaaaagcatcaaactaaatactttgaatttctgagagtttcatgattaaaaggaatatggaaagaatcaatgaatatagcatcttatccaaccttacaa |
3863064 |
T |
|
| Q |
501 |
aagttagaatgcattcttcaggttcttctaataggtgactctggaactgaaagatcaatctacacag |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3863065 |
aagttagaatgcattcttcaggttcttctaataggtgactctggaactgaaagatcaatctacacag |
3863131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 593 - 735
Target Start/End: Original strand, 3863158 - 3863305
Alignment:
| Q |
593 |
gactcaactgataacatgcttgagtataaaaccttgtgcttattatctatggtttataaaatgcgcttatgtagcatttgtacttattc-----tcataa |
687 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3863158 |
gactcaactggtaacatgcttgagtataaaaccttgtgcttattatctatggtttataaaatgcgcttatgtagcatttgtacttattctcgtatcataa |
3863257 |
T |
|
| Q |
688 |
tatactgctaaactaattgttatacacaagtgtgctatatatagtatt |
735 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
3863258 |
tatactgctaaactaatggttatacacaagtgtggtatatatagtatt |
3863305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University