View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11855_low_6 (Length: 685)
Name: NF11855_low_6
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 354 - 670
Target Start/End: Complemental strand, 40434197 - 40433887
Alignment:
| Q |
354 |
attgtatgtgtttttgttcgttgaggtatgcttgtgaacatgtttaaaattgtacttggaattgaatgaccaaatgaggttaggaaaccaagtccaacat |
453 |
Q |
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| T |
40434197 |
attgtatgtgtttttgttcgttgaggtatgcttgtgaacatgtttaaaattgtacttggaattgaatgaccaaatgaggttaggaaaccaa------cat |
40434104 |
T |
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| Q |
454 |
catatacggatatagtttattatgaaattaatcatgttatagttggatgtaagagtcattatgaagttgtgttaattggaaatacacatatgatcttggt |
553 |
Q |
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| T |
40434103 |
catatacggatatagtttattatgaaattaatcatgttatagttggatgtaagggtcattatgaagttgtgttaattggaaatacacatatgatcttggt |
40434004 |
T |
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| Q |
554 |
tgtcctgttgtctaatttaaattggagttcctcatataattccatatagaaaactgttgttgctattagttgttttaaaaatttgttgttgctattcgct |
653 |
Q |
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| T |
40434003 |
tgtcctgttgtctaatttaaattggagttcctcatataatgccatatagaaaactgttgttgctattagttgttttaaaaatttgttgttgctattcgct |
40433904 |
T |
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| Q |
654 |
gatgtaacagttgatgt |
670 |
Q |
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| T |
40433903 |
gatgtaacagttgatgt |
40433887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 40434492 - 40434199
Alignment:
| Q |
19 |
caacacgatcaaacaaatgatatttccatcaaaagaggagactcaatgttattacgactatcttaagctttatatccatgacaatgagccctacaagtac |
118 |
Q |
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| T |
40434492 |
caacacgatcaaacaaatgatatttccatcaaaagaggagactcaatgttatcacgactatcttaagctttatatccatgacaatgagccctacaagtac |
40434393 |
T |
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| Q |
119 |
tttctttgttcaaaacttgaaaaggaatcttgctcttgttttctgagcgcttctgcaaatcatagttgttgctgcgaaacatctaggcaaagaatctgtt |
218 |
Q |
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| T |
40434392 |
tttctttgttcaaaacttgaaaaggaatcttgctctttttttctgagcgcttctgcaaatcatagttgttgctgcgaaacatctaggcaaagaatctgtt |
40434293 |
T |
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| Q |
219 |
cgagacggtaacacttttatcattactgctgatctggctgtttatccgctcaccacataatatttaacttacttgacttcatatgtgagaggga |
312 |
Q |
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| T |
40434292 |
cgagatggtaacacttttatcattactgctgatctggctgtttatccactcaccacagaatatttaactttcttgacttcatatgtgagaggga |
40434199 |
T |
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