View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11855_low_7 (Length: 682)

Name: NF11855_low_7
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11855_low_7
NF11855_low_7
[»] chr6 (1 HSPs)
chr6 (19-668)||(3359778-3360417)
[»] chr5 (1 HSPs)
chr5 (592-662)||(27548461-27548530)
[»] chr3 (3 HSPs)
chr3 (358-454)||(44589864-44589959)
chr3 (592-647)||(24252030-24252084)
chr3 (612-644)||(2758227-2758259)
[»] chr8 (2 HSPs)
chr8 (592-663)||(24606902-24606973)
chr8 (592-645)||(13580286-13580338)
[»] chr7 (1 HSPs)
chr7 (584-645)||(31799689-31799750)
[»] chr4 (1 HSPs)
chr4 (599-644)||(37226384-37226429)
[»] chr1 (1 HSPs)
chr1 (585-629)||(3265384-3265428)


Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 19 - 668
Target Start/End: Complemental strand, 3360417 - 3359778
Alignment:
Q  19 ccccctcatttcaaggctatatgcttagcaataaatggccaaaaaattcccaaattataaatatattttgtctggccactaacttatttcttgaaacatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3360417 ccccctcatttcaaggctatatgcttagcaataaatggccaaaaaattcccaaattataaatatattttgtctggccactaacttatttcttgaaacatt 3360318  T
Q  119 aactannnnnnnnnnnnnnnagggcttgcacttacctctcgaaacattaattggttaggaccactttgattcttgtagccctaggagggtggaccttgat 218  Q
    |||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3360317 aactattttttcatttttttagggcttgcacttacctctcgaaacattaattggttaggaccactttgattcttgtagccctaggagggtggaccttga- 3360219  T
Q  219 catatgaaagtcttgagagtttggaagtctttaatagaagaggaagcagtggataatgtatgatca------cttactagttagagacacattctttaac 312  Q
                    ||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||    
T  3360218 ----------------gagtttggaagtctttaatagaagaggaagcagtggataatgtatgatcatgatcacttactagttagagacacattctttaac 3360135  T
Q  313 aactattctattcaagacaacttgaaaactaggnnnnnnnnnn-ctccatcaaaccgagcttgatttctgcaatgccaaatatagtgtcaattatattga 411  Q
    |||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  3360134 aactattctattcaagacaacttgaaaactaggttattttttttctccatcaaaccgagcttgatttctgcaatgccaaata--gtgtcaattatattga 3360037  T
Q  412 taatgctcgaaagagacacatctttacatcgtttagtccaactttcagtcatcaaagattgagtatctggaaacacctaatcaattccaaaacctgtcag 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3360036 taatgctcgaaagagacacatctttacatcgtttagtccaactttcagtcatcaaagattgagtatctggaaacacctaatcaattccaaaacctgtcag 3359937  T
Q  512 taaaaccgcaagtg--nnnnnnnncatgagaagttgtttaacaatcaccatgacaaagctgacataaggaaacaatcggtcgtaagacttttggtgtcct 609  Q
    ||||||||||||||          ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3359936 taaaaccgcaagtgaaaaaaaaaacatgagaagttgtttcacaatcaccatgacaaagctgacataaggaaacaatcagtcgtaagacttttggtgtcct 3359837  T
Q  610 agacgaatcaataaagttgtgttcttttaattattcaattaactttcttcttacctttg 668  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3359836 agacgaatcaataaagttgtgttcttttaattattcaattaactttcttcttacctttg 3359778  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 592 - 662
Target Start/End: Original strand, 27548461 - 27548530
Alignment:
Q  592 taagacttttggtgtcctagacgaatcaataaagttgtgttcttttaattattcaattaactttcttctta 662  Q
    ||||||||||| ||||||  |||||||||||||||||||  ||||||||||||||| |  |||||||||||    
T  27548461 taagacttttgatgtcctgtacgaatcaataaagttgtg-ccttttaattattcaaatgtctttcttctta 27548530  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 358 - 454
Target Start/End: Complemental strand, 44589959 - 44589864
Alignment:
Q  358 ccatcaaaccgagcttgatttctgcaatgccaaatatagtgtcaattatattg--ataatgctcgaaagagacacatctttacatcgtttagtccaact 454  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||| |||| ||  ||||||||| |||||  ||||| ||||||| |||||| ||||||    
T  44589959 ccatcaaatcgagcctgatttctgcaatgccaa--atagtgtcaactataatgatataatgctcaaaagaatcacat-tttacattgtttaggccaact 44589864  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 647
Target Start/End: Complemental strand, 24252084 - 24252030
Alignment:
Q  592 taagacttttggtgtcctagacgaatcaataaagttgtgttcttttaattattcaa 647  Q
    ||||||| |||||||||| |||||||||||||| |||||  |||||||||||||||    
T  24252084 taagactattggtgtcctggacgaatcaataaaattgtg-ccttttaattattcaa 24252030  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 612 - 644
Target Start/End: Complemental strand, 2758259 - 2758227
Alignment:
Q  612 acgaatcaataaagttgtgttcttttaattatt 644  Q
    ||||||||||||||||||| |||||||||||||    
T  2758259 acgaatcaataaagttgtgatcttttaattatt 2758227  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 663
Target Start/End: Complemental strand, 24606973 - 24606902
Alignment:
Q  592 taagacttttggtgtcctagacgaatcaataaagttgtgttcttttaattattcaattaactttcttcttac 663  Q
    ||||| |||||||||| ||| |||||||| |||||||||| |||||| ||||| || |  ||||||||||||    
T  24606973 taagatttttggtgtcttaggcgaatcaacaaagttgtgtccttttagttatttaaatgtctttcttcttac 24606902  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 645
Target Start/End: Original strand, 13580286 - 13580338
Alignment:
Q  592 taagacttttggtgtcctagacgaatcaataaagttgtgttcttttaattattc 645  Q
    ||||| |||||||||||| |||||| ||||||| || |||||||||||||||||    
T  13580286 taagatttttggtgtcctggacgaaacaataaa-ttatgttcttttaattattc 13580338  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 645
Target Start/End: Complemental strand, 31799750 - 31799689
Alignment:
Q  584 atcggtcgtaagacttttggtgtcctagacgaatcaataaagttgtgttcttttaattattc 645  Q
    ||||||| ||||| |||| |||||||||||||| ||||||| || || ||| ||||||||||    
T  31799750 atcggtcctaagatttttcgtgtcctagacgaaacaataaaattttgctctcttaattattc 31799689  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 644
Target Start/End: Complemental strand, 37226429 - 37226384
Alignment:
Q  599 tttggtgtcctagacgaatcaataaagttgtgttcttttaattatt 644  Q
    ||||||||| | |||||||||||||| | |||||||||||||||||    
T  37226429 tttggtgtcttggacgaatcaataaaatcgtgttcttttaattatt 37226384  T

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Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 585 - 629
Target Start/End: Original strand, 3265384 - 3265428
Alignment:
Q  585 tcggtcgtaagacttttggtgtcctagacgaatcaataaagttgt 629  Q
    |||||| ||||| |||| ||||| |||||||||||||||||||||    
T  3265384 tcggtcttaagatttttagtgtcttagacgaatcaataaagttgt 3265428  T

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