View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11855_low_9 (Length: 545)
Name: NF11855_low_9
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 11 - 524
Target Start/End: Complemental strand, 5709614 - 5709101
Alignment:
| Q |
11 |
caaaggtaactaatgctaagtacttggaactcactgctgctcgcatttgattgagtcctccattgcatgaaaccataagataaccattattcttataaat |
110 |
Q |
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| T |
5709614 |
caaaggtaactaatgctaagtacttggaactcactgctgctcgcatttgattgagtcctccattgcatgaaaccataagataaccattattcttataaat |
5709515 |
T |
|
| Q |
111 |
ccctgatgaaaagaattaacaaattcagctaatatccataagattcttattcttatcataagaagaaacaagctttttagtaaatatacacagggtttaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5709514 |
ccctgatgaaaagaattaacaaattcagctaatatccataagattcttattcttatcataagaagaaacaagctttttagtaaatatacacagggtttaa |
5709415 |
T |
|
| Q |
211 |
aaaaggaaaaggactgcgactgtgatttagacagcgacattatcgtgtttgatgtctcttcaaccacaatgggattgctatcgtaagccctatttgacaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5709414 |
aaaaggaaaaggactgcgactgtgatttagacagcgacattatcgtgtttgatgtctcttcaaccacaatgggattgctatcgtaagccctatttgacaa |
5709315 |
T |
|
| Q |
311 |
caattaactgcaatatcatgaaacaggaccgaccacgaccataatataaaggcacgatctaattaggactttctgtaatgagaagacttttctgcaatat |
410 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5709314 |
caattcactgcaatatcatgaaacacgaccgaccacgaccataatataaaggcacgatctaattaggactttctgtaatgagaagacttttctgcaatat |
5709215 |
T |
|
| Q |
411 |
catggatcatgactgactgtgaacacgatataaggctcatgcataatcaacgagaatatacttacttttactgacgagaataattcttaaacagtgtagc |
510 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5709214 |
catggatcatgactgactgtgaccacgatataaggctcatgcataatcaacgagaatatacttacttttactgacgagaataattcttaaacagtgtagc |
5709115 |
T |
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| Q |
511 |
actgatggtgtctg |
524 |
Q |
| |
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|||||||||||||| |
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| T |
5709114 |
actgatggtgtctg |
5709101 |
T |
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