View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11856_high_10 (Length: 601)

Name: NF11856_high_10
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11856_high_10
NF11856_high_10
[»] chr7 (44 HSPs)
chr7 (123-581)||(37133475-37133933)
chr7 (144-355)||(37131836-37132047)
chr7 (129-356)||(46245122-46245349)
chr7 (187-362)||(12180529-12180704)
chr7 (187-353)||(11671176-11671342)
chr7 (144-288)||(15135446-15135590)
chr7 (180-354)||(14774515-14774688)
chr7 (180-354)||(15224968-15225141)
chr7 (218-355)||(8231555-8231692)
chr7 (218-356)||(45277888-45278026)
chr7 (188-357)||(12178482-12178651)
chr7 (209-362)||(13420198-13420351)
chr7 (218-367)||(31393580-31393729)
chr7 (219-356)||(37348735-37348872)
chr7 (218-357)||(21716540-21716679)
chr7 (218-357)||(31392057-31392196)
chr7 (218-357)||(32882636-32882774)
chr7 (218-353)||(40028460-40028595)
chr7 (218-357)||(40029950-40030089)
chr7 (218-357)||(45276409-45276547)
chr7 (219-357)||(46246497-46246635)
chr7 (218-363)||(21715065-21715210)
chr7 (218-357)||(8230069-8230208)
chr7 (144-258)||(11747490-11747604)
chr7 (209-353)||(37350113-37350260)
chr7 (306-357)||(31734763-31734814)
chr7 (218-289)||(4675718-4675789)
chr7 (218-289)||(32881183-32881254)
chr7 (218-357)||(15136861-15136999)
chr7 (249-356)||(21017733-21017839)
chr7 (218-288)||(30792751-30792821)
chr7 (309-357)||(3704397-3704445)
chr7 (309-356)||(11669841-11669888)
chr7 (314-357)||(25008091-25008134)
chr7 (314-357)||(28848557-28848600)
chr7 (314-357)||(43546747-43546790)
chr7 (299-357)||(706742-706800)
chr7 (242-353)||(21016238-21016349)
chr7 (309-363)||(27162007-27162061)
chr7 (299-357)||(41385811-41385869)
chr7 (19-48)||(37133396-37133425)
chr7 (299-356)||(41593205-41593262)
chr7 (309-357)||(708164-708212)
chr7 (218-286)||(9532535-9532603)
[»] chr3 (19 HSPs)
chr3 (129-357)||(40499084-40499312)
chr3 (129-356)||(31796666-31796893)
chr3 (129-356)||(48568362-48568589)
chr3 (129-362)||(41083103-41083336)
chr3 (219-353)||(22942339-22942475)
chr3 (193-353)||(30700299-30700459)
chr3 (218-357)||(33732964-33733103)
chr3 (218-353)||(33734423-33734558)
chr3 (218-357)||(53527969-53528108)
chr3 (219-357)||(41081801-41081939)
chr3 (219-357)||(48566995-48567133)
chr3 (219-357)||(53529456-53529594)
chr3 (219-356)||(31795373-31795510)
chr3 (244-353)||(41879927-41880036)
chr3 (218-353)||(31656956-31657092)
chr3 (188-357)||(30701732-30701900)
chr3 (299-357)||(32558918-32558976)
chr3 (299-353)||(32615648-32615702)
chr3 (314-357)||(8391400-8391443)
[»] chr5 (21 HSPs)
chr5 (129-357)||(38624715-38624943)
chr5 (186-357)||(16308564-16308736)
chr5 (180-356)||(17554885-17555063)
chr5 (193-357)||(27756681-27756845)
chr5 (129-289)||(11772532-11772692)
chr5 (220-362)||(30333930-30334072)
chr5 (218-354)||(25916199-25916335)
chr5 (218-356)||(1418857-1418995)
chr5 (193-355)||(16309995-16310157)
chr5 (218-356)||(30332283-30332421)
chr5 (219-356)||(8874196-8874333)
chr5 (219-357)||(38626092-38626230)
chr5 (218-354)||(8872522-8872657)
chr5 (218-355)||(39101716-39101853)
chr5 (218-372)||(39103332-39103486)
chr5 (219-354)||(36619546-36619682)
chr5 (222-289)||(1417477-1417545)
chr5 (249-289)||(28803722-28803762)
chr5 (309-364)||(18201357-18201412)
chr5 (218-285)||(25914561-25914628)
chr5 (218-289)||(28592145-28592215)
[»] chr2 (31 HSPs)
chr2 (129-357)||(45499304-45499532)
chr2 (129-357)||(40303292-40303520)
chr2 (187-356)||(16142226-16142395)
chr2 (218-356)||(1841676-1841814)
chr2 (200-357)||(38729965-38730123)
chr2 (216-357)||(1840156-1840297)
chr2 (188-357)||(16143487-16143656)
chr2 (188-358)||(44421233-44421403)
chr2 (218-353)||(13947751-13947885)
chr2 (218-353)||(14088940-14089074)
chr2 (218-353)||(22053128-22053262)
chr2 (219-356)||(40304684-40304821)
chr2 (202-366)||(38728175-38728338)
chr2 (194-354)||(44464987-44465147)
chr2 (219-367)||(45492954-45493102)
chr2 (219-367)||(45500696-45500844)
chr2 (219-357)||(28563375-28563513)
chr2 (253-357)||(35588126-35588230)
chr2 (186-272)||(44419889-44419975)
chr2 (218-355)||(22060400-22060538)
chr2 (218-357)||(44097272-44097413)
chr2 (216-357)||(15346863-15347004)
chr2 (188-353)||(44463569-44463732)
chr2 (218-354)||(7317392-7317528)
chr2 (202-288)||(472788-472874)
chr2 (242-357)||(15348383-15348498)
chr2 (309-357)||(6844109-6844157)
chr2 (314-356)||(20587039-20587081)
chr2 (314-356)||(20588476-20588518)
chr2 (299-357)||(22054333-22054391)
chr2 (309-353)||(472723-472767)
[»] chr1 (41 HSPs)
chr1 (187-353)||(50316940-50317106)
chr1 (218-362)||(28920576-28920720)
chr1 (218-357)||(16673177-16673316)
chr1 (186-356)||(7185745-7185915)
chr1 (187-356)||(24438837-24439007)
chr1 (218-363)||(7655185-7655330)
chr1 (218-362)||(33257875-33258018)
chr1 (218-362)||(33278047-33278190)
chr1 (186-353)||(13211001-13211168)
chr1 (214-356)||(41668273-41668415)
chr1 (218-357)||(28919082-28919221)
chr1 (221-364)||(33981496-33981639)
chr1 (219-357)||(36145343-36145481)
chr1 (219-356)||(33259294-33259431)
chr1 (219-356)||(33279453-33279590)
chr1 (220-367)||(19249310-19249455)
chr1 (188-288)||(35973165-35973265)
chr1 (218-289)||(19057788-19057859)
chr1 (201-357)||(22684054-22684210)
chr1 (298-353)||(44268891-44268946)
chr1 (218-357)||(50315317-50315456)
chr1 (219-357)||(24437073-24437211)
chr1 (218-348)||(36146833-36146962)
chr1 (219-356)||(7653686-7653823)
chr1 (186-357)||(7184322-7184492)
chr1 (188-289)||(13209642-13209743)
chr1 (309-357)||(10708029-10708077)
chr1 (298-362)||(31321003-31321067)
chr1 (218-289)||(16672722-16672793)
chr1 (218-357)||(18309084-18309223)
chr1 (298-355)||(16592022-16592079)
chr1 (298-357)||(12097941-12098000)
chr1 (200-271)||(33981645-33981716)
chr1 (309-356)||(44269086-44269133)
chr1 (309-356)||(46604439-46604486)
chr1 (314-357)||(46652798-46652841)
chr1 (299-357)||(8323441-8323499)
chr1 (299-357)||(31815772-31815830)
chr1 (309-366)||(26734416-26734473)
chr1 (218-258)||(1969645-1969685)
chr1 (299-355)||(9626469-9626525)
[»] chr8 (20 HSPs)
chr8 (129-357)||(1650041-1650270)
chr8 (209-357)||(39885988-39886136)
chr8 (186-357)||(3157926-3158097)
chr8 (186-354)||(5461936-5462104)
chr8 (209-357)||(39884615-39884763)
chr8 (186-355)||(15279522-15279691)
chr8 (186-355)||(15459891-15460060)
chr8 (200-355)||(2552408-2552562)
chr8 (218-357)||(25264339-25264478)
chr8 (218-357)||(33295367-33295505)
chr8 (254-357)||(22714006-22714109)
chr8 (218-356)||(25265826-25265964)
chr8 (249-357)||(26720201-26720308)
chr8 (218-289)||(33294007-33294078)
chr8 (309-356)||(45448504-45448551)
chr8 (299-357)||(357976-358034)
chr8 (299-357)||(17707450-17707508)
chr8 (299-357)||(36899897-36899955)
chr8 (309-345)||(2552764-2552800)
chr8 (309-357)||(17706164-17706212)
[»] scaffold1176 (1 HSPs)
scaffold1176 (218-357)||(2050-2189)
[»] chr6 (19 HSPs)
chr6 (218-366)||(8745422-8745570)
chr6 (222-355)||(19084045-19084178)
chr6 (218-357)||(1258360-1258500)
chr6 (219-366)||(1256704-1256851)
chr6 (218-355)||(2956156-2956293)
chr6 (218-357)||(10707675-10707807)
chr6 (218-354)||(8752721-8752857)
chr6 (190-356)||(1443417-1443583)
chr6 (305-357)||(7678655-7678707)
chr6 (249-354)||(10699891-10699996)
chr6 (218-289)||(19082733-19082804)
chr6 (299-357)||(7796748-7796806)
chr6 (217-272)||(7678563-7678618)
chr6 (242-289)||(10699297-10699344)
chr6 (219-289)||(4296328-4296398)
chr6 (308-357)||(843532-843581)
chr6 (309-357)||(19596342-19596390)
chr6 (309-357)||(19597989-19598037)
chr6 (305-357)||(28048979-28049031)
[»] chr4 (34 HSPs)
chr4 (218-357)||(19994497-19994636)
chr4 (218-357)||(19995975-19996114)
chr4 (186-357)||(42889700-42889870)
chr4 (218-357)||(44251604-44251743)
chr4 (218-357)||(48713383-48713522)
chr4 (218-357)||(54123466-54123605)
chr4 (218-357)||(55948874-55949013)
chr4 (188-353)||(54536587-54536753)
chr4 (218-367)||(42977187-42977336)
chr4 (209-357)||(22307670-22307818)
chr4 (209-353)||(22309050-22309194)
chr4 (218-357)||(18597631-18597770)
chr4 (218-357)||(44253113-44253252)
chr4 (186-353)||(54534981-54535148)
chr4 (200-354)||(10337106-10337259)
chr4 (218-373)||(10338089-10338246)
chr4 (218-356)||(32082554-32082692)
chr4 (218-357)||(42978840-42978979)
chr4 (252-356)||(24919052-24919156)
chr4 (237-348)||(9561854-9561965)
chr4 (218-354)||(53355100-53355238)
chr4 (219-357)||(55947359-55947497)
chr4 (298-357)||(18597855-18597914)
chr4 (218-353)||(33607471-33607606)
chr4 (299-353)||(38157023-38157077)
chr4 (218-289)||(54121894-54121965)
chr4 (309-355)||(33609356-33609402)
chr4 (315-353)||(55017743-55017781)
chr4 (218-289)||(25351721-25351791)
chr4 (219-289)||(3068991-3069061)
chr4 (299-357)||(4906128-4906186)
chr4 (299-356)||(4931998-4932055)
chr4 (309-357)||(4933343-4933391)
chr4 (309-357)||(29756271-29756319)
[»] scaffold0633 (1 HSPs)
scaffold0633 (234-356)||(6831-6953)
[»] scaffold1118 (1 HSPs)
scaffold1118 (219-348)||(2420-2549)
[»] scaffold0489 (1 HSPs)
scaffold0489 (222-362)||(6740-6880)
[»] scaffold0280 (1 HSPs)
scaffold0280 (218-357)||(12130-12270)
[»] scaffold0672 (1 HSPs)
scaffold0672 (243-289)||(475-521)
[»] scaffold0129 (1 HSPs)
scaffold0129 (299-357)||(4259-4317)


Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 123 - 581
Target Start/End: Original strand, 37133475 - 37133933
Alignment:
Q  123 tccccataatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttt 222  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  37133475 tccccataatatagtcaggcttcatctgtcacaacacataagtgttttttgccatgtcatccttcgccacgtcagcgaccgttagacacataggtgtttt 37133574  T
Q  223 tgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacac 322  Q
    |||||| ||| |||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||        |||||| ||| ||||||||||||||    
T  37133575 tgtaacggaaattgaagggaggaacgaaaaccaaaacgtttataacttccgggggttgttttagaacaaaaaaagatacagtgacgaaaaccaaaaacac 37133674  T
Q  323 gcgaacttacggggacgatttacatatttaagcctcaaaataattgtaaaatactccttccaattttatctataaaagacatccgagttaacaaaaattg 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37133675 gcgaacttacggggacgatttacatatttaagcctcaaaataattgtaaaatactccttccgattttatctataaaagacatccgagttaacaaaaattg 37133774  T
Q  423 atacaataatcagatacattaacttttataaattcatatatctcttataaataagaatggagaaagtaataactaatattgttatttaataataactttg 522  Q
    |||  |||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||    
T  37133775 atatgataatcagatacattaacttttataaatccagatatctcttataaataagactggaggaagtaataattaatattattatttaataataactttg 37133874  T
Q  523 ttgtactccattttttcttaaaaaattaatgtatgtttttgttttcatgtaattgtact 581  Q
    || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37133875 ttctactccattttttcttaaaaaaataatgtatgtttttgttttcatgtaattgtact 37133933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 144 - 355
Target Start/End: Complemental strand, 37132047 - 37131836
Alignment:
Q  144 tcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgttttt-gtaacagaagttgacggaa 242  Q
    ||||||||||| ||| ||||| |||||| |||| | ||||||||||||||||| |  ||||||||||| |||| |||||| ||||| |||||||||||||    
T  37132047 tcatctgtcacgacacataagcgttttt-gccatgtcatccttcgccacgtcaacggccgttagacacgtaggcgttttttgtaacggaagttgacggaa 37131949  T
Q  243 gggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatt 342  Q
    ||||||||||||||||||||||||||||||  | ||| |||||||||        ||||||  || ||||||||| ||||||||||||||| ||||||||    
T  37131948 gggacgaaaaccaaaacgtttataacttacatgagttattttagaacaaaaaaagatacaggaacgaaaaccaaacacacgcgaacttacgtggacgatt 37131849  T
Q  343 tacatatttaagc 355  Q
    |||||||||||||    
T  37131848 tacatatttaagc 37131836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 129 - 356
Target Start/End: Complemental strand, 46245349 - 46245122
Alignment:
Q  129 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 228  Q
    ||||||||||||   ||||||||||| ||| ||||| ||||||||||||  ||||||| |||||||||||  ||||||||||   ||| |||||||||||    
T  46245349 taatatagtcagggatcatctgtcacgacacataagcgttttttgccacatcatcctttgccacgtcagccgccgttagacagcgaggcgtttttgtaac 46245250  T
Q  229 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaac 328  Q
     ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||        |||| | ||| ||||||||||||||||||||    
T  46245249 ggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaac 46245150  T
Q  329 ttacggggacgatttacatatttaagcc 356  Q
    |||| |||||  ||||||||||||||||    
T  46245149 ttacagggaccttttacatatttaagcc 46245122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 187 - 362
Target Start/End: Original strand, 12180529 - 12180704
Alignment:
Q  187 cgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttag 286  Q
    |||||||||||  ||||||||||||||    |||||||||||||| | |||||| ||||||||||| |||||||||| |||||||| ||| |||||||||    
T  12180529 cgccacgtcagtcaccgttagacacatcaacgtttttgtaacagatgctgacgggagggacgaaaatcaaaacgtttgtaacttacagggtttgttttag 12180628  T
Q  287 aacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcctcaaaa 362  Q
    |||        |||||| ||| |||||||||||||||||||||||| ||||| ||| |||||||| ||||| ||||    
T  12180629 aacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttacagggacaattaacatattttagcctaaaaa 12180704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 187 - 353
Target Start/End: Original strand, 11671176 - 11671342
Alignment:
Q  187 cgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttag 286  Q
    |||||||||||  ||||||||||||||  |  ||||||||||||| | |||||  ||||||||||| |||||| ||| |||||||| ||| |||||||||    
T  11671176 cgccacgtcagtcaccgttagacacatcagcatttttgtaacagatgctgacgagagggacgaaaatcaaaacatttgtaacttacagggtttgttttag 11671275  T
Q  287 aacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaa 353  Q
    |||        |||||  ||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  11671276 aacaaaaatagatacatggacgaaaacaaaaaacacgcgaacttacggggacgatttacatatttaa 11671342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 144 - 288
Target Start/End: Complemental strand, 15135590 - 15135446
Alignment:
Q  144 tcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaag 243  Q
    |||| |||||| ||| |||||  |||||||||||  |||||||||||||||||||  ||||||||||| | || |||||||||||| |||||||||| ||    
T  15135590 tcatttgtcacgacacataagacttttttgccacatcatccttcgccacgtcagccgccgttagacactttggcgtttttgtaacaaaagttgacgggag 15135491  T
Q  244 ggacgaaaaccaaaacgtttataacttacgggggttgttttagaa 288  Q
    ||||||||| ||||| |||  |||||| | |||||||||||||||    
T  15135490 ggacgaaaatcaaaaagttattaacttgcaggggttgttttagaa 15135446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 180 - 354
Target Start/End: Complemental strand, 14774688 - 14774515
Alignment:
Q  180 catccttcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggtt 279  Q
    |||||||||||| |||||| ||  |||||||| | || ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||| | ||||||    
T  14774688 catccttcgccatgtcagccactattagacactttggcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttgcaggggtt 14774589  T
Q  280 gttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaag 354  Q
    ||||||||||        |||||  ||| ||||| ||||||| |||||||||||||||| |||||||||||||||    
T  14774588 gttttagaacaaaaatg-atacacggacgaaaacaaaaaacatgcgaacttacggggacaatttacatatttaag 14774515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 180 - 354
Target Start/End: Complemental strand, 15225141 - 15224968
Alignment:
Q  180 catccttcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggtt 279  Q
    |||||||||||| |||||| ||  |||||||| | || ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||| | ||||||    
T  15225141 catccttcgccatgtcagccactattagacactttggcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttgcaggggtt 15225042  T
Q  280 gttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaag 354  Q
    ||||||||||        |||||  ||| ||||| ||||||| |||||||||||||||| |||||||||||||||    
T  15225041 gttttagaacaaaaatg-atacacggacgaaaacaaaaaacatgcgaacttacggggacaatttacatatttaag 15224968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 218 - 355
Target Start/End: Original strand, 8231555 - 8231692
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| || |||||||| ||||| |||  |||||||| ||||||||||||||||        |||||| |||||||||||||    
T  8231555 gtttttgtaacggaagttgacgggagtgacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaaccaaa 8231654  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagc 355  Q
    |||| || || |||| ||||||||||||||||||||||    
T  8231655 aacaagccaaattacagggacgatttacatatttaagc 8231692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 218 - 356
Target Start/End: Original strand, 45277888 - 45278026
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  |||||||||||| |||        |||||| ||| |||||||||    
T  45277888 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttaaaacaaaaaaagatacagggacgaaaaccaaa 45277987  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    ||||||| || |||| |||||||||||||||||||||||    
T  45277988 aacacgccaaattacagggacgatttacatatttaagcc 45278026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 188 - 357
Target Start/End: Complemental strand, 12178651 - 12178482
Alignment:
Q  188 gccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttaga 287  Q
    |||||| |||| ||||||||||||||  | |||||| ||||||||||| |||  |||||| |||||||||| ||| | ||||||| | | ||||||||||    
T  12178651 gccacgccagccaccgttagacacatcagcgtttttttaacagaagttaacgttagggactaaaaccaaaaagttaacaacttacagagtttgttttaga 12178552  T
Q  288 acnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||        |||||| ||| |||||||||||||||||||||||  |||||  |||||||||||||||||    
T  12178551 acaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttagagggaccttttacatatttaagcct 12178482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 209 - 362
Target Start/End: Original strand, 13420198 - 13420351
Alignment:
Q  209 cacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgaca 308  Q
    |||||||  ||||||||||| ||   |||||| |||||| |||||||||| | ||||||||||| ||||||||||||||||        |||||| |||     
T  13420198 cacatagacgtttttgtaacggattatgacggcagggactaaaaccaaaatgcttataacttacaggggttgttttagaacaaaaaaagatacagggact 13420297  T
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcctcaaaa 362  Q
    |||||||||||||||| ||||||| ||| | |||||||||||||||||| ||||    
T  13420298 aaaaccaaaaacacgcaaacttacaggggccatttacatatttaagcctaaaaa 13420351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 218 - 367
Target Start/End: Original strand, 31393580 - 31393729
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| |||||||||||  |||| |||  |||||||| |||||||||||| |||        |||||  ||| |||||||||    
T  31393580 gtttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttacaggggttgttttataacaaaaaaagatacaaggacgaaaaccaaa 31393679  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcctcaaaataatt 367  Q
    ||||||| || |||| |||||||||||||||||||||||| |||| ||||    
T  31393680 aacacgccaaattacagggacgatttacatatttaagccttaaaagaatt 31393729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 219 - 356
Target Start/End: Complemental strand, 37348872 - 37348735
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    |||||||||||||   |||||| | |||| ||||||||||||||||||||||||  || ||||||||||||        ||| || ||| ||||||||||    
T  37348872 tttttgtaacagataatgacggcatggactaaaaccaaaacgtttataacttacaaggattgttttagaacaaaaaatgatatagggactaaaaccaaaa 37348773  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcc 356  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  37348772 acacgcgaacttacggggaccatttacaaatttaagcc 37348735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 21716540 - 21716679
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||| ||| |||||||| |||        |||||| ||| |||||||||    
T  21716540 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacaaaaaaagatacagggacgaaaaccaaa 21716639  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||| || |||| || |||||||||||||||||||||    
T  21716640 aacacgccaaattacaggaacgatttacatatttaagcct 21716679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 357
Target Start/End: Complemental strand, 31392196 - 31392057
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||| ||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||        |||||| ||| |||||||||    
T  31392196 gtttttgtaacggaagttggcgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaaccaaa 31392097  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||  || |||| ||||||||||||||||||||||||    
T  31392096 aacacgtcaaattacagggacgatttacatatttaagcct 31392057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 32882636 - 32882774
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||||||||||||||| ||||| ||   |||||||   |||||||||||||||       ||||||  |||||||||||||    
T  32882636 gtttttgtaacggaagttgacggaagggacgaaaatcaaaaagtcattaacttataagggttgttttagaacaaaagaatatacatggacaaaaaccaaa 32882735  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||| || || |||| ||||||||||||||||||||||||    
T  32882736 aacatgc-aaattacagggacgatttacatatttaagcct 32882774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 353
Target Start/End: Complemental strand, 40028595 - 40028460
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| |||||||||||  |||| |||  |||||||  ||||||||||||||||        |||||| ||| |||||||||    
T  40028595 gtttttgtaacggaagttgacgggagggacgaaaataaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaaccaaa 40028496  T
Q  318 aacacgcgaacttacggggacgatttacatatttaa 353  Q
    ||||||| || |||| ||||||||||||||||||||    
T  40028495 aacacgccaaattacagggacgatttacatatttaa 40028460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 40029950 - 40030089
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  | ||||||||||||||       ||||||| ||  ||||| |||    
T  40029950 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttactaacttatagaggttgttttagaacaaaaaaatatacagggatgaaaacaaaa 40030049  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||| || |||| ||||||||||||||||||||||||    
T  40030050 aacacgccaaattacagggacgatttacatatttaagcct 40030089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 357
Target Start/End: Complemental strand, 45276547 - 45276409
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||        |||||| |||||||||||||    
T  45276547 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaaccaaa 45276448  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||| ||| || ||||  ||||||| |||||||||||||||    
T  45276447 aactcgccaaattac-aggacgatctacatatttaagcct 45276409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 46246497 - 46246635
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||   ||||||| ||| ||||||||||||        |||||| ||| ||||||||||    
T  46246497 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaa 46246596  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||| |||||  |||||||||||||||||    
T  46246597 acacgcgaacttacagggaccttttacatatttaagcct 46246635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 218 - 363
Target Start/End: Complemental strand, 21715210 - 21715065
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||| |||||||| |||        |||||| ||| |||| ||||    
T  21715210 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatagggattgttttaaaacaaaaaaagatacagggacgaaaatcaaa 21715111  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcctcaaaat 363  Q
    ||||||| || |||| |||||||||||||||||||||||| |||||    
T  21715110 aacacgccaaattacagggacgatttacatatttaagcctaaaaat 21715065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 218 - 357
Target Start/End: Complemental strand, 8230208 - 8230069
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||  |||||||||||  |||| |||  |||||||  ||||||||||||||||        |||||| ||| |||||||||    
T  8230208 gtttttgtaacggaagttgacgagagggacgaaaataaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaaccaaa 8230109  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||| | || |||| ||||||||||||||||||||||||    
T  8230108 aacacaccaaattacagggacgatttacatatttaagcct 8230069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 11747604 - 11747490
Alignment:
Q  144 tcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaag 243  Q
    ||||||||||| ||| ||||| | ||||||||||  |||| ||||||||||||||  ||||||||||| | || ||||||||||| ||||| ||||| ||    
T  11747604 tcatctgtcacgacacataagcggtttttgccacatcatcattcgccacgtcagccgccgttagacactttggcgtttttgtaacggaagtagacgggag 11747505  T
Q  244 ggacgaaaaccaaaa 258  Q
    ||||| ||| |||||    
T  11747504 ggacggaaatcaaaa 11747490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 353
Target Start/End: Original strand, 37350113 - 37350260
Alignment:
Q  209 cacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnnta---tacagcg 305  Q
    |||||||  ||||||||||||||   |||||| |||||| |||||||||| | ||||||||||  ||||||||||||||||        |   ||||  |    
T  37350113 cacatagacgtttttgtaacagattatgacggcagggactaaaaccaaaatgcttataacttataggggttgttttagaacaaaaaaaaaagatacatgg 37350212  T
Q  306 acaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaa 353  Q
     | |||||||||||||||||||||||||||||| ||||||||||||||    
T  37350213 gctaaaaccaaaaacacgcgaacttacggggaccatttacatatttaa 37350260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 31734763 - 31734814
Alignment:
Q  306 acaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||||||||||||||||  ||||||||||||| |||||||||    
T  31734763 acaaaaaccaaaaacacgcgaacttacaaggacgatttacatgtttaagcct 31734814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 4675718 - 4675789
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 289  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  | ||||||||||||||    
T  4675718 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatagtggttgttttagaac 4675789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 32881254 - 32881183
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 289  Q
    ||||||||||| |||||||| || ||||||||||| ||||| |||  |||||||  ||||||||||||||||    
T  32881254 gtttttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaac 32881183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 15136861 - 15136999
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    |||||| ||||||||||||||||  |||| ||||| ||||| |||  |||||| |  |||||||||||||||        || ||  ||| |||| ||||    
T  15136861 gtttttttaacagaagttgacggg-gggatgaaaatcaaaaagttattaacttgcaagggttgttttagaacaaaaaaagattcaaggacgaaaatcaaa 15136959  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||| |||| ||||||||||| ||||||||||||    
T  15136960 aacacgcgaatttacagggacgatttatatatttaagcct 15136999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 356
Target Start/End: Original strand, 21017733 - 21017839
Alignment:
Q  249 aaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacata 348  Q
    |||||||||| ||||||||||||| ||||||||||||||||        |||||| ||| |||||| ||||| | || |||||  ||||||| |||||||    
T  21017733 aaaaccaaaatgtttataacttacaggggttgttttagaacaaaaaag-atacagggacgaaaaccgaaaacccacgtacttagtgggacgaattacata 21017831  T
Q  349 tttaagcc 356  Q
    ||||||||    
T  21017832 tttaagcc 21017839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 30792751 - 30792821
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaa 288  Q
    |||||||||||| |  ||||||| ||||||||||| ||||| |||  |||||||| |||||||||||||||    
T  30792751 gtttttgtaacaaagtttgacgggagggacgaaaagcaaaaagttattaacttacaggggttgttttagaa 30792821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 3704445 - 3704397
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||||||||| ||||||||||  ||||||||||| |||||||||||    
T  3704445 aaaaccaaaaacaagcgaacttacatggacgatttacctatttaagcct 3704397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 11669888 - 11669841
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    ||||||||||||| |||||||||| |||||  ||||||||||||||||    
T  11669888 aaaaccaaaaacatgcgaacttacagggaccgtttacatatttaagcc 11669841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 25008134 - 25008091
Alignment:
Q  314 caaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||| |||| |||||| |||||||||||||||||    
T  25008134 caaaaacacgcgaaattacagggacgttttacatatttaagcct 25008091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 28848600 - 28848557
Alignment:
Q  314 caaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||| |||| |||||| |||||||||||||||||    
T  28848600 caaaaacacgcgaaattacagggacgttttacatatttaagcct 28848557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 43546747 - 43546790
Alignment:
Q  314 caaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||| |||| |||||| |||||||||||||||||    
T  43546747 caaaaacacgcgaaattacagggacgttttacatatttaagcct 43546790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 706800 - 706742
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||| ||| |||||||||||||||| || |||| |||||  |||||||||||||||||    
T  706800 tacagggactaaaaccaaaaacacgctaaattacagggaccttttacatatttaagcct 706742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 353
Target Start/End: Complemental strand, 21016349 - 21016238
Alignment:
Q  242 agggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgat 341  Q
    |||||| |||| | ||||||||||||||||   | |||||||||||||        |||||  |||||||| ||||||||||| ||||||  ||||||||    
T  21016349 agggaccaaaagcgaaacgtttataacttagatgagttgttttagaacaaaaatagatacatggacaaaaaacaaaaacacgcaaacttatagggacgat 21016250  T
Q  342 ttacatatttaa 353  Q
    | ||||||||||    
T  21016249 tcacatatttaa 21016238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 363
Target Start/End: Original strand, 27162007 - 27162061
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcctcaaaat 363  Q
    |||||||||| | ||||||||||| |||||  ||||||||||||||||| |||||    
T  27162007 aaaaccaaaatctcgcgaacttacagggaccttttacatatttaagcctaaaaat 27162061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 41385811 - 41385869
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||| ||| ||||| |||||  ||||||||||| ||||| ||||||||||||||||||    
T  41385811 tacagggaccaaaacaaaaaatgcgcgaacttacagggaccatttacatatttaagcct 41385869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 37133396 - 37133425
Alignment:
Q  19 agagagagaggaagaagatgaaaataatgg 48  Q
    ||||||||||||||||||||||||||||||    
T  37133396 agagagagaggaagaagatgaaaataatgg 37133425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 41593205 - 41593262
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    ||||| ||| |||||||||||  | ||||||||| ||||| |||||||||||||||||    
T  41593205 tacagggaccaaaaccaaaaatgcacgaacttacagggaccatttacatatttaagcc 41593262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 708164 - 708212
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||||| || |||| |||||  |||||||||||||||||    
T  708164 aaaaccaaaaacacgctaaattacagggaccttttacatatttaagcct 708212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 9532535 - 9532603
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttag 286  Q
    ||||||||||||||  |||| || ||||||||||| ||||| |||  ||| |||| |||||||||||||    
T  9532535 gtttttgtaacagagtttgatgggagggacgaaaagcaaaaagttattaatttactggggttgttttag 9532603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 129 - 357
Target Start/End: Original strand, 40499084 - 40499312
Alignment:
Q  129 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 228  Q
    ||||||||||||   ||||||||||| ||| ||||| ||||||||||||  ||||||| |||||||||||  ||||||||||   ||| |||||||||||    
T  40499084 taatatagtcagggatcatctgtcacgacacataagcgttttttgccacatcatcctttgccacgtcagccgccgttagacagcgaggcgtttttgtaac 40499183  T
Q  229 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaac 328  Q
     ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||        |||| | ||| ||||||||||||||||||||    
T  40499184 ggaagttgacgggagggacgaaaatcaaaaagttattaacttaccggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaac 40499283  T
Q  329 ttacggggacgatttacatatttaagcct 357  Q
    |||| |||||  |||||||||||||||||    
T  40499284 ttacagggaccttttacatatttaagcct 40499312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 129 - 356
Target Start/End: Original strand, 31796666 - 31796893
Alignment:
Q  129 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 228  Q
    ||||||||||||   ||||||||||| ||| || || ||||||||||||  ||||||| |||| |||||   ||||||||||   ||| |||||||||||    
T  31796666 taatatagtcagggatcatctgtcacgacacatcagcgttttttgccacatcatcctttgccatgtcagtcgccgttagacagtgaggcgtttttgtaac 31796765  T
Q  229 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaac 328  Q
     ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||        |||| | ||| ||||||||||||||||||||    
T  31796766 ggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaac 31796865  T
Q  329 ttacggggacgatttacatatttaagcc 356  Q
    |||| |||||  ||||||||||||||||    
T  31796866 ttacagggaccttttacatatttaagcc 31796893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 129 - 356
Target Start/End: Original strand, 48568362 - 48568589
Alignment:
Q  129 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 228  Q
    ||||||||||||   ||||||||||| ||| |||||  |||||||||||  ||||||| |||||| || |   |||||||||   ||| |||||||||||    
T  48568362 taatatagtcagggatcatctgtcacgacacataagaattttttgccacatcatcctttgccacgacatccgtcgttagacagggaggcgtttttgtaac 48568461  T
Q  229 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaac 328  Q
     ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||        |||| | ||| ||||||||||||||||||||    
T  48568462 ggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaaaatacggggacgaaaaccaaaaacacgcgaac 48568561  T
Q  329 ttacggggacgatttacatatttaagcc 356  Q
    |||| | |||  ||||||||||||||||    
T  48568562 ttacagagaccttttacatatttaagcc 48568589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 129 - 362
Target Start/End: Original strand, 41083103 - 41083336
Alignment:
Q  129 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 228  Q
    ||||||||||||   ||||||||||| ||| ||||| ||||||||||||  ||||||| |||| |||||   |||| |||||   ||| |||||||||||    
T  41083103 taatatagtcagggatcatctgtcacgacacataagcgttttttgccacatcatcctttgccatgtcagtcgccgt-agacagtgaggcgtttttgtaac 41083201  T
Q  229 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac-nnnnnnntatacagcgacaaaaaccaaaaacacgcgaa 327  Q
     ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||         |||| | ||| |||||||||||||||| ||    
T  41083202 ggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaaagatacggggacgaaaaccaaaaacacgcaaa 41083301  T
Q  328 cttacggggacgatttacatatttaagcctcaaaa 362  Q
    ||||| |||||  ||||||||||||||||| ||||    
T  41083302 cttacagggaccttttacatatttaagcctaaaaa 41083336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 219 - 353
Target Start/End: Complemental strand, 22942475 - 22942339
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac--nnnnnnntatacagcgacaaaaaccaa 316  Q
    ||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||   ||||||||||||||         ||||||| ||  ||||||||    
T  22942475 tttttgtaacagatgatgacggatgggaccaaaaccaaaacgtttataacttacataggttgttttagaacaaaaaaaaatatacagggatgaaaaccaa 22942376  T
Q  317 aaacacgcgaacttacggggacgatttacatatttaa 353  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  22942375 aaacaagcgaacttacagggacgatttacatatttaa 22942339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 193 - 353
Target Start/End: Complemental strand, 30700459 - 30700299
Alignment:
Q  193 gtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnn 292  Q
    ||||||| |||| ||||||||| |  ||||||||||||| | |||||| |||||| |||| ||||| ||||||||||||| |||  |||||||||||       
T  30700459 gtcagctgccgtcagacacataagcatttttgtaacagatgctgacggcagggaccaaaagcaaaatgtttataacttacagggtgtgttttagaacaaa 30700360  T
Q  293 nnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaa 353  Q
         |||||  ||| |||||||||||||||||||||||  | ||||||||||||||||||    
T  30700359 aaaagatacaaggacgaaaaccaaaaacacgcgaacttaaagagacgatttacatatttaa 30700299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 357
Target Start/End: Complemental strand, 33733103 - 33732964
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| | ||||||||| ||||| |||  |||||||  ||||||||||||||||        ||||||  || |||||||||    
T  33733103 gtttttgtaacggaagttgacgggaaggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaaaatacaggaacgaaaaccaaa 33733004  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||| || |||| ||||||||||||||||||||||||    
T  33733003 aacacgccaaattacagggacgatttacatatttaagcct 33732964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 353
Target Start/End: Original strand, 33734423 - 33734558
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| |||||||| || ||||||||||| ||||| |||  |||||||| ||||||||||||||||        ||||||  || |||||||||    
T  33734423 gtttttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacaggaaccaaaaccaaa 33734522  T
Q  318 aacacgcgaacttacggggacgatttacatatttaa 353  Q
    ||||||| || |||| ||||||||||||||||||||    
T  33734523 aacacgctaaattacagggacgatttacatatttaa 33734558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 357
Target Start/End: Complemental strand, 53528108 - 53527969
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||| || |||||||||||||        |||||| ||| |||||||||    
T  53528108 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggagttgttttagaacaaaaaaagatacagggacgaaaaccaaa 53528009  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||| || |||  ||||||||||||| ||||||||||    
T  53528008 aacacgccaaattaaagggacgatttacacatttaagcct 53527969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 41081939 - 41081801
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||   ||||||| ||| ||||||||||||        |||||| ||| ||||||||||    
T  41081939 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaa 41081840  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||| |||||  |||||||||||||||||    
T  41081839 acacgcgaacttacagggaccttttacatatttaagcct 41081801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 48567133 - 48566995
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||   ||||||| ||| ||||||||||||        |||||| ||| ||||||||||    
T  48567133 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagtgacgaaaaccaaaa 48567034  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||| ||||||| |||||  |||||||||||||||||    
T  48567033 acacgcaaacttacagggaccttttacatatttaagcct 48566995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 53529456 - 53529594
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    |||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  |||| | |||||||||        |||||| ||| ||||| ||||    
T  53529456 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggctattttagaacaaaaaaagatacagggacgaaaactaaaa 53529555  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcct 357  Q
    | |||| || |||| ||||||||||||||||||||||||    
T  53529556 atacgccaaattacagggacgatttacatatttaagcct 53529594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 356
Target Start/End: Complemental strand, 31795510 - 31795373
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||   ||||||| ||| ||||||||||||        |||||| | | ||||||||||    
T  31795510 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggccgaaaaccaaaa 31795411  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcc 356  Q
    |||||||||||||| |||||  ||||| ||||||||||    
T  31795410 acacgcgaacttacagggaccttttacgtatttaagcc 31795373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 41880036 - 41879927
Alignment:
Q  244 ggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgattt 343  Q
    ||||||||| |||||||||||||||||||  || ||||||||||||        |||||| ||| |||||||||||||| ||||||||| |  |||||||    
T  41880036 ggacgaaaatcaaaacgtttataacttacaaggtttgttttagaacaaaaaaagatacagagacgaaaaccaaaaacacacgaacttacagaaacgattt 41879937  T
Q  344 acatatttaa 353  Q
    ||||||||||    
T  41879936 acatatttaa 41879927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 353
Target Start/End: Complemental strand, 31657092 - 31656956
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac-nnnnnnntatacagcgacaaaaaccaa 316  Q
    ||||||||||||||  ||||||| ||||||||||| ||||| |||  |||||||| ||| ||||||||||||         |||||  ||| ||||||||    
T  31657092 gtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacagggattgttttagaacaaaaaaaaaatacaaggacgaaaaccaa 31656993  T
Q  317 aaacacgcgaacttacggggacgatttacatatttaa 353  Q
    ||||| || || |||| ||||||||||||||||||||    
T  31656992 aaacatgccaaattacagggacgatttacatatttaa 31656956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 357
Target Start/End: Original strand, 30701732 - 30701900
Alignment:
Q  188 gccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttaga 287  Q
    ||||||||||||  ||||||||||||| | |||||||||||| | | |||||  |||||| |||| || || | |||||||||||  |   |||||||||    
T  30701732 gccacgtcagctgtcgttagacacataagcgtttttgtaacaaatgatgacgttagggaccaaaagcataaggcttataacttacatgatctgttttaga 30701831  T
Q  288 acnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||        |||||| ||| |||||||||||||||||||||||  ||   |||||||||||||||||||    
T  30701832 acaaaaaaagatacag-gacgaaaaccaaaaacacgcgaacttaaaggagtgatttacatatttaagcct 30701900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 32558976 - 32558918
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||| ||| ||||| |||||||||||||||||| |||||  |||||||||||||||||    
T  32558976 tacagggacgaaaacaaaaaacacgcgaacttacagggaccttttacatatttaagcct 32558918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 32615648 - 32615702
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaa 353  Q
    ||||| ||||||||| |||||||||||||||||| |||||  |||||||||||||    
T  32615648 tacagggacaaaaacaaaaaacacgcgaacttacagggaccttttacatatttaa 32615702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 8391443 - 8391400
Alignment:
Q  314 caaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||| |||| |||||| |||||||||||||||||    
T  8391443 caaaaacacgcgaaattacagggacgttttacatatttaagcct 8391400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 129 - 357
Target Start/End: Complemental strand, 38624943 - 38624715
Alignment:
Q  129 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 228  Q
    |||||||||||||  ||||||||||| ||| ||||| ||||||||||||  ||||||| ||||| |||||  ||||||||||   ||| |||||||||||    
T  38624943 taatatagtcagagatcatctgtcacgacacataagcgttttttgccacatcatcctttgccacatcagccgccgttagacagcgaggcgtttttgtaac 38624844  T
Q  229 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaac 328  Q
     ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||        |||| | ||| ||||||||||||||||||||    
T  38624843 ggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaac 38624744  T
Q  329 ttacggggacgatttacatatttaagcct 357  Q
    |||| |||||  |||||||||||||||||    
T  38624743 ttacagggaccttttacatatttaagcct 38624715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 186 - 357
Target Start/End: Complemental strand, 16308736 - 16308564
Alignment:
Q  186 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 285  Q
    ||||||||||||||  ||||||||||||| | |||||||||||||| | |||||| |||||| |||| || || | ||||||||||| |||  |||||||    
T  16308736 tcgccacgtcagctgtcgttagacacataagcgtttttgtaacagatgatgacggtagggaccaaaagcacaaggcttataacttacagggtctgtttta 16308637  T
Q  286 gaacnnnnnnnt-atacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||         |||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16308636 gaacaaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttacagggacgatttacatatttaagcct 16308564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 180 - 356
Target Start/End: Original strand, 17554885 - 17555063
Alignment:
Q  180 catccttcgccacgt-cagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggt 278  Q
    ||||||| ||||||| ||||||| ||||||||| | ||  |||||||||| ||||||||||| ||||||||||| ||||| |||  |||||| | |||||    
T  17554885 catccttagccacgttcagctactgttagacactttggcatttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttgcaggggt 17554984  T
Q  279 tgttttagaacnnnnnnntatacagcgac-aaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    |||||||||||        |||||| ||| |||||||||||||||||||||||||  |||| |||||||||||||||||    
T  17554985 tgttttagaacaaaaaataatacagggacgaaaaaccaaaaacacgcgaacttacatggacaatttacatatttaagcc 17555063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 193 - 357
Target Start/End: Original strand, 27756681 - 27756845
Alignment:
Q  193 gtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnn 292  Q
    ||||||| |||| ||||||||| | |||||||||||| | | |||||| |||||| |||| ||||| |||||||| |||| ||| ||||||||||||       
T  27756681 gtcagctgccgtcagacacataagcgtttttgtaacaaatgctgacggcagggaccaaaagcaaaatgtttataatttacagggtttgttttagaacaaa 27756780  T
Q  293 nnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
         |||||| ||| ||||| |||||||||||||||||  ||||||||||||||||||||||||    
T  27756781 aaaagatacagggacgaaaacaaaaaacacgcgaacttagagggacgatttacatatttaagcct 27756845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 129 - 289
Target Start/End: Original strand, 11772532 - 11772692
Alignment:
Q  129 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 228  Q
    ||||||||||||   ||||||||||| ||| ||||| ||||||||||||  ||||||| |||||||||||   |||||||||   ||||| |||||||||    
T  11772532 taatatagtcagggatcatctgtcacgacacataagcgttttttgccacatcatcctttgccacgtcagccgtcgttagacaatgaggtgcttttgtaac 11772631  T
Q  229 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 289  Q
     ||||||||| | ||||||||||| ||||| |||  ||||||||  |||||||||||||||    
T  11772632 ggaagttgacaggagggacgaaaatcaaaaagttattaacttacaagggttgttttagaac 11772692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 220 - 362
Target Start/End: Original strand, 30333930 - 30334072
Alignment:
Q  220 ttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaa 319  Q
    ||||||||  ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||        |||||| |||||||||||||||    
T  30333930 ttttgtaatggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaaccaaaaa 30334029  T
Q  320 cacgcgaacttacggggacgatttacatatttaagcctcaaaa 362  Q
    ||||| || |||  ||||||| |||||||||||||||| ||||    
T  30334030 cacgccaaattatagggacgacttacatatttaagccttaaaa 30334072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 218 - 354
Target Start/End: Original strand, 25916199 - 25916335
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| |||||||||||  |||| |||  |||||||  ||||||||||||||||        |||||| |||||||||||||    
T  25916199 gtttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacaaaaaccaaa 25916298  T
Q  318 aacacgcgaacttacggggacgatttacatatttaag 354  Q
    ||||||| || ||||  ||||||||||||||||||||    
T  25916299 aacacgccaaattacatggacgatttacatatttaag 25916335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 218 - 356
Target Start/End: Original strand, 1418857 - 1418995
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||        |||||| ||| ||||| |||    
T  1418857 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacaaaa 1418956  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    ||||||  || |||| |||||||||||||||||||||||    
T  1418957 aacacgtcaaattacagggacgatttacatatttaagcc 1418995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 355
Target Start/End: Original strand, 16309995 - 16310157
Alignment:
Q  193 gtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnn 292  Q
    ||||||| |||| | ||||||| | |||||||||||||| | |||||| |||||| |||| ||||| |||||||||||||  ||  |||||||||||       
T  16309995 gtcagcttccgtcatacacataagcgtttttgtaacagatgctgacggcagggaccaaaagcaaaatgtttataacttacaaggtctgttttagaacaaa 16310094  T
Q  293 nnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagc 355  Q
        |||| ||  || |||||||||||||  |||||||||  |||||||||||||||||||||    
T  16310095 aaaatatataggaacgaaaaccaaaaacatacgaacttacatggacgatttacatatttaagc 16310157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 218 - 356
Target Start/End: Complemental strand, 30332421 - 30332283
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||| | ||||||||||| ||||| |||  |||||||  ||||||||||||||||        |||||| ||| ||||| |||    
T  30332421 gtttttgtaacggaagttgacaggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacaaaa 30332322  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    || |||| || |||| |||||||||||||||||||||||    
T  30332321 aatacgccaaattacagggacgatttacatatttaagcc 30332283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 219 - 356
Target Start/End: Original strand, 8874196 - 8874333
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    |||||||||||||  ||||||  |||||| |||| ||||| |||  |||||||| ||||||||||||||||       ||||||| ||| ||||||||||    
T  8874196 tttttgtaacagagtttgacgagagggacaaaaagcaaaaagttattaacttacaggggttgttttagaacaaaaaaatatacagggacgaaaaccaaaa 8874295  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcc 356  Q
    ||| |  || |||| |||||||||||||||||||||||    
T  8874296 acaggtcaaattacagggacgatttacatatttaagcc 8874333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 38626092 - 38626230
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||   ||||||| ||| ||||||||||||        |||||  ||| ||||||||||    
T  38626092 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacatggacgaaaaccaaaa 38626191  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||| |||||||||| |||||  |||||||||||||||||    
T  38626192 acatgcgaacttacagggaccttttacatatttaagcct 38626230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 218 - 354
Target Start/End: Complemental strand, 8872657 - 8872522
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||||||  |||||||  |||||||||| ||||| |||  ||||||| |||||||||||||||||        ||||||  || |||||||||    
T  8872657 gtttttgtaacagagtttgacggg-gggacgaaaagcaaaaagttattaacttatgggggttgttttagaacaaaaaaagatacaggaacgaaaaccaaa 8872559  T
Q  318 aacacgcgaacttacggggacgatttacatatttaag 354  Q
    ||||||| || |||| ||||||| |||||||||||||    
T  8872558 aacacgccaaattacagggacgaattacatatttaag 8872522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 218 - 355
Target Start/End: Complemental strand, 39101853 - 39101716
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||||||  ||||||| ||||||||||| ||||| |||  |||| ||| ||||||||||||||||        | ||||  || |||||||||    
T  39101853 gtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacatacaggggttgttttagaacaaaaaaagacacagaaacgaaaaccaaa 39101754  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagc 355  Q
    ||| | | || |||| ||||||||||||||||||||||    
T  39101753 aacgcaccaaattacagggacgatttacatatttaagc 39101716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 372
Target Start/End: Original strand, 39103332 - 39103486
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    |||||||||| |||  ||||||| ||||||||||  ||||| |||  |||||||   |||||||||||||||        |||| |  || |||||||||    
T  39103332 gtttttgtaatagagtttgacgggagggacgaaacgcaaaaagttattaacttatacgggttgttttagaacaaaaaaagatactggaacgaaaaccaaa 39103431  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcctcaaaataattgtaaa 372  Q
    ||||||| || ||||  |||||||||||||||||||||||  |||||||| ||||    
T  39103432 aacacgccaaattacaaggacgatttacatatttaagcctataaataattctaaa 39103486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 354
Target Start/End: Complemental strand, 36619682 - 36619546
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac-nnnnnnntatacagcgacaaaaaccaaa 317  Q
    |||||||||||||  ||||||| ||||||||||| ||||| | |  |||||||  ||||||||||||||||         |||||| ||| |||| ||||    
T  36619682 tttttgtaacagagtttgacgggagggacgaaaagcaaaaagctattaacttataggggttgttttagaacaaaaaaaagatacagggacgaaaatcaaa 36619583  T
Q  318 aacacgcgaacttacggggacgatttacatatttaag 354  Q
    ||||||| || |||  |||||||||||||||||||||    
T  36619582 aacacgccaaattatagggacgatttacatatttaag 36619546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 1417545 - 1417477
Alignment:
Q  222 ttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttac-gggggttgttttagaac 289  Q
    ||||||| ||||||||||| |||||||||||  |||| |||  |||||||| |||||||||||||||||    
T  1417545 ttgtaacggaagttgacgggagggacgaaaataaaaaagttattaacttacagggggttgttttagaac 1417477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 28803762 - 28803722
Alignment:
Q  249 aaaaccaaaacgtttataacttacgggggttgttttagaac 289  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  28803762 aaaaccaaaacgtttataacttacggtgtttgttttagaac 28803722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 18201357 - 18201412
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcctcaaaata 364  Q
    ||||| |||||||||| ||||||| ||||| |||||||||||||||| | ||||||    
T  18201357 aaaacaaaaaacacgcaaacttacagggacaatttacatatttaagcttaaaaata 18201412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 25914628 - 25914561
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 285  Q
    ||||||||||| ||||||||||| |||||||||||  |||| |||  ||||| || ||||||||||||    
T  25914628 gtttttgtaacggaagttgacgggagggacgaaaataaaaaagttattaactaacaggggttgtttta 25914561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 28592215 - 28592145
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 289  Q
    |||||||||||||||||| |||  ||| || ||||||||||| ||||||||||||   ||||||||||||||    
T  28592215 gtttttgtaacagaagttaacgttaggaactaaaaccaaaacatttataacttac-acggttgttttagaac 28592145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 129 - 357
Target Start/End: Complemental strand, 45499532 - 45499304
Alignment:
Q  129 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 228  Q
    ||||||||||||   ||||||||||| ||| ||||| ||||||||||||  ||||||| |||| |||||   ||||||||||   ||| |||||||||||    
T  45499532 taatatagtcagggatcatctgtcacgacacataagcgttttttgccacatcatcctttgccatgtcagtcgccgttagacagtgaggcgtttttgtaac 45499433  T
Q  229 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaac 328  Q
     ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||        |||| | ||| ||||||||||||||||||||    
T  45499432 ggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaac 45499333  T
Q  329 ttacggggacgatttacatatttaagcct 357  Q
    |||| |||||  |||||||||||||||||    
T  45499332 ttacagggaccttttacatatttaagcct 45499304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 129 - 357
Target Start/End: Complemental strand, 40303520 - 40303292
Alignment:
Q  129 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 228  Q
    ||||||||||||   ||||||||||| ||| ||||| ||||||||||||  ||||||| |||| |||||   ||||||||||   ||| |||||||||||    
T  40303520 taatatagtcagggatcatctgtcacgacacataagcgttttttgccacatcatcctttgccatgtcagtcgccgttagacagtgaggcgtttttgtaac 40303421  T
Q  229 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaac 328  Q
     ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||        |||| | ||| ||||||||||||||||||||    
T  40303420 ggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaac 40303321  T
Q  329 ttacggggacgatttacatatttaagcct 357  Q
    |||| |||||  |||||||||||||||||    
T  40303320 ttacagggaccttttacatatttaagcct 40303292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 187 - 356
Target Start/End: Complemental strand, 16142395 - 16142226
Alignment:
Q  187 cgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttag 286  Q
    |||||||||||  ||||||||||||||  | |||||||||||||| | |||||| |||| |||||| |||||||||| |||||||| ||| |||||||||    
T  16142395 cgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgacgggagggccgaaaatcaaaacgtttgtaacttacagggtttgttttag 16142296  T
Q  287 aacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    |||        |||||| ||| ||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  16142295 aacagaaaaaaatacagagacgaaaaccaaaaacacgcgaacttacaaggacgatttacatattttagcc 16142226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 218 - 356
Target Start/End: Original strand, 1841676 - 1841814
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| |||||||||||  |||| |||  |||||||| ||||||||||||||||        |||||| |||||||||||||    
T  1841676 gtttttgtaacggaagttgacgggagggacgaaaataaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaaccaaa 1841775  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    ||||||| || || | |||||||||||||||||||||||    
T  1841776 aacacgccaaatttcagggacgatttacatatttaagcc 1841814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 38729965 - 38730123
Alignment:
Q  200 accgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntat 299  Q
    ||||||||||||||  |||||||||||||||| | | |||| ||||||||||| ||||| |||| |||||||| ||| ||||||||||||        ||    
T  38729965 accgttagacacatcagtgtttttgtaacagaggctaacggcagggacgaaaatcaaaaggtttgtaacttacagggtttgttttagaacaaaaaaagat 38730064  T
Q  300 acagcgac-aaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||| ||| |||||||||||||||||||||||||  ||| |||||| ||||||||||||    
T  38730065 acagggacgaaaaaccaaaaacacgcgaacttacaaggatgatttatatatttaagcct 38730123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 216 - 357
Target Start/End: Complemental strand, 1840297 - 1840156
Alignment:
Q  216 gtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaacca 315  Q
    ||||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||        |||||   ||||||||||    
T  1840297 gtgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacaagaacaaaaacca 1840198  T
Q  316 aaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||||| || |||| ||||||||||||||||||||||||    
T  1840197 aaaacacgccaaattacagggacgatttacatatttaagcct 1840156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 188 - 357
Target Start/End: Original strand, 16143487 - 16143656
Alignment:
Q  188 gccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttaga 287  Q
    ||||||||||| ||||||||||||||  | |||||| ||||||||||| |||  |||||| |||||||||| ||| | ||||||| ||| ||||||||||    
T  16143487 gccacgtcagccaccgttagacacatcagcgtttttttaacagaagttaacgttagggactaaaaccaaaaagttaacaacttacagggtttgttttaga 16143586  T
Q  288 acnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||        |||||| ||| |||| ||||||||||| | |||||||||||  |||||||||||||||||    
T  16143587 acaaaaaaagatacagggacgaaaatcaaaaacacgcaagcttacggggaccttttacatatttaagcct 16143656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 188 - 358
Target Start/End: Original strand, 44421233 - 44421403
Alignment:
Q  188 gccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttaga 287  Q
    |||||||||||||||||||||||||||   |||||||||||||| | |||||| || ||| |||| ||||||||||||||||||| ||   |||||||||    
T  44421233 gccacgtcagctaccgttagacacataaacgtttttgtaacagatggtgacggcagagaccaaaagcaaaacgtttataacttaccggctctgttttaga 44421332  T
Q  288 acnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcctc 358  Q
    |         |||||  ||| ||||| |||||||||| || |||| |||| ||||||||||||||||||||    
T  44421333 agaaaaaaggatacaaggacgaaaacaaaaaacacgccaatttacagggatgatttacatatttaagcctc 44421403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 353
Target Start/End: Complemental strand, 13947885 - 13947751
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||        |||||| ||| |||||||||    
T  13947885 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacag-gacgaaaaccaaa 13947787  T
Q  318 aacacgcgaacttacggggacgatttacatatttaa 353  Q
    ||||||| || |||| ||||||||||||||||||||    
T  13947786 aacacgccaaattacagggacgatttacatatttaa 13947751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 353
Target Start/End: Complemental strand, 14089074 - 14088940
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||        |||||| ||| |||||||||    
T  14089074 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacag-gacgaaaaccaaa 14088976  T
Q  318 aacacgcgaacttacggggacgatttacatatttaa 353  Q
    ||||||| || |||| ||||||||||||||||||||    
T  14088975 aacacgccaaattacagggacgatttacatatttaa 14088940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 353
Target Start/End: Complemental strand, 22053262 - 22053128
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    |||||||||||||||||| |||  |||||| |||||||||||||||||||||||| ||||||||||||||||        |||||| ||| ||||| |||    
T  22053262 gtttttgtaacagaagttaacgttagggactaaaaccaaaacgtttataacttac-ggggttgttttagaacaaaaaaagatacagggacgaaaacaaaa 22053164  T
Q  318 aacacgcgaacttacggggacgatttacatatttaa 353  Q
    |||||||||||||||   |||  |||||||||||||    
T  22053163 aacacgcgaacttacaaagaccttttacatatttaa 22053128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 219 - 356
Target Start/End: Original strand, 40304684 - 40304821
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||   ||||||| ||| ||||||||||||        |||||| ||| ||||||||||    
T  40304684 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaa 40304783  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcc 356  Q
    |||||||||||||| |||||  ||||||||||||||||    
T  40304784 acacgcgaacttacagggaccttttacatatttaagcc 40304821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 202 - 366
Target Start/End: Complemental strand, 38728338 - 38728175
Alignment:
Q  202 cgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatac 301  Q
    ||||||||||||  | ||||| ||||||||   |||||| ||||||||||| |||||||||| |||||| | ||| ||||||||||||        ||||    
T  38728338 cgttagacacatcagcgttttcgtaacagattatgacgggagggacgaaaatcaaaacgtttgtaacttgcagggtttgttttagaacaaaaaaagatac 38728239  T
Q  302 agcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcctcaaaataat 366  Q
    |  ||| |||||||||||| || |||||||| ||||||| |||||||||||||||| ||||||||    
T  38728238 atggacgaaaaccaaaaactcgtgaacttacagggacga-ttacatatttaagccttaaaataat 38728175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 194 - 354
Target Start/End: Original strand, 44464987 - 44465147
Alignment:
Q  194 tcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnn 293  Q
    |||||| |||| ||||| ||| | ||||||||||||||   |||||| |||||| |||| ||||| |||||||||||||  ||  |||||||||||        
T  44464987 tcagctgccgtcagacatataagcgtttttgtaacagatactgacggcagggaccaaaagcaaaatgtttataacttacaaggtctgttttagaacaaca 44465086  T
Q  294 nnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaag 354  Q
        |||||  ||| | |||||||||||||||||||||| |||||||||||||||||||||    
T  44465087 aaaaatacaaggacgagaaccaaaaacacgcgaacttacagggacgatttacatatttaag 44465147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 367
Target Start/End: Original strand, 45492954 - 45493102
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||   ||||||| ||| ||||||||||||        |||||| ||| ||||||||||    
T  45492954 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaa 45493053  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcctcaaaataatt 367  Q
    ||||||||| |||| |||||  ||||||||||||||||| || ||||||    
T  45493054 acacgcgaatttacagggaccttttacatatttaagcctaaagataatt 45493102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 367
Target Start/End: Original strand, 45500696 - 45500844
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||   ||||||| ||| ||||||||||||        |||||| ||| ||||||||||    
T  45500696 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaa 45500795  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcctcaaaataatt 367  Q
    ||||||||| |||| |||||  ||||||||||||||||| || ||||||    
T  45500796 acacgcgaatttacagggaccttttacatatttaagcctaaagataatt 45500844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 28563513 - 28563375
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    |||||||||||||  ||||||| ||||||||||| ||||| |||  |||||||  |||||||||||||||         |||||  ||| ||||||||||    
T  28563513 tttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttataggggttgttttagaagaaaaaaagatacaaggacgaaaaccaaaa 28563414  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||| || |||| ||||||||||||||||||||||||    
T  28563413 acacgccaaattacagggacgatttacatatttaagcct 28563375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 35588230 - 35588126
Alignment:
Q  253 ccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatattta 352  Q
    ||||||||||||||||||||| ||||||||||||||        ||||||  ||| |||||||||| |||||||||||||  ||||||||| ||||||||    
T  35588230 ccaaaacgtttataacttacgagggttgttttagaataaaaaaatatacatggacgaaaaccaaaagcacgcgaacttacatggacgatttccatattta 35588131  T
Q  353 agcct 357  Q
    |||||    
T  35588130 agcct 35588126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 186 - 272
Target Start/End: Complemental strand, 44419975 - 44419889
Alignment:
Q  186 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttac 272  Q
    |||||||||||||| |||||||||||||| | ||||||||||| || | |||||| | |||  |||| |||||||||||||||||||    
T  44419975 tcgccacgtcagctgccgttagacacataagcgtttttgtaacggatgatgacggcaaggatcaaaagcaaaacgtttataacttac 44419889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 355
Target Start/End: Original strand, 22060400 - 22060538
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac-nnnnnnntatacagcgacaaaaaccaa 316  Q
    |||||||||||| ||||| |||  ||| || |||||||||||| ||||||||| | |||||||||||| |||         ||| || ||| ||||||||    
T  22060400 gtttttgtaacataagttaacgttaggaactaaaaccaaaacgcttataactttcaggggttgttttaaaacaaaaaaaagatatagggacgaaaaccaa 22060499  T
Q  317 aaacacgcgaacttacggggacgatttacatatttaagc 355  Q
    |||||||| ||||||| |||||  |||||||||||||||    
T  22060500 aaacacgcaaacttacagggaccttttacatatttaagc 22060538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 44097272 - 44097413
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaa--cnnnnnnntatacagcgacaaaaacca 315  Q
    |||||||||||||||||| |||  |||||| |||||||||| ||| | ||||||| ||| |||||||||||           |||||| ||| |||||||    
T  44097272 gtttttgtaacagaagttaacgttagggactaaaaccaaaaggttaacaacttacagggtttgttttagaaggaaaaaaaaaatacagggacgaaaacca 44097371  T
Q  316 aaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||||||||||||| | |||  |||| ||||||||||||    
T  44097372 aaaacacgcgaacttacagagaccttttatatatttaagcct 44097413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 357
Target Start/End: Complemental strand, 15347004 - 15346863
Alignment:
Q  216 gtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaacca 315  Q
    ||||||||||||||||   |||||| | |||| |||| |||||||||||||| ||||  |||||||||||||||        ||| |  ||  |||||||    
T  15347004 gtgtttttgtaacagattatgacggcaaggaccaaaagcaaaacgtttataatttacaagggttgttttagaacaaaaaaagatatatggatgaaaacca 15346905  T
Q  316 aaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||||| ||||||| | ||| ||||||||||||| ||||    
T  15346904 aaaacacgcaaacttactgagacaatttacatatttaggcct 15346863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 353
Target Start/End: Complemental strand, 44463732 - 44463569
Alignment:
Q  188 gccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttaga 287  Q
    |||| ||||||| |||||||||||||| | |||||||||||||| | | |||  |||||| |||| || || | ||||||||||| |||  | |||||||    
T  44463732 gccatgtcagctgccgttagacacataagcgtttttgtaacagatgataacgatagggaccaaaagcataaagcttataacttacagggtctattttaga 44463633  T
Q  288 acnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaa 353  Q
    ||        ||||||  || |||||||||||||| |||||||||   ||||||||||||||||||    
T  44463632 acaaaaaa--atacagaaacgaaaaccaaaaacacacgaacttacatagacgatttacatatttaa 44463569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 354
Target Start/End: Complemental strand, 7317528 - 7317392
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    |||| ||||||||||||| ||   |||||| |||||||||| ||| | ||||||  ||| ||||||||||||        |||||  ||| |||||||||    
T  7317528 gtttatgtaacagaagttaacattagggaccaaaaccaaaaagttaacaacttatagggtttgttttagaacaaaaaaagatacaaggacgaaaaccaaa 7317429  T
Q  318 aacacgcgaacttacggggacgatttacatatttaag 354  Q
    ||||||||||||||| ||||   ||||||||||||||    
T  7317428 aacacgcgaacttacagggatcttttacatatttaag 7317392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 288
Target Start/End: Complemental strand, 472874 - 472788
Alignment:
Q  202 cgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaa 288  Q
    |||||||||| || |  ||||||||||||| | |||| | |||||| |||| |||||||||||||||||||  | ||||||||||||    
T  472874 cgttagacacgtaagcatttttgtaacagatgatgactgtagggaccaaaaacaaaacgtttataacttacatgagttgttttagaa 472788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 357
Target Start/End: Original strand, 15348383 - 15348498
Alignment:
Q  242 agggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgat 341  Q
    |||||| ||||  ||||| ||||||||||||  ||||||||||| |||        |||||| ||||||||||||||| | |||| | |||  |||||||    
T  15348383 agggaccaaaagtaaaacatttataacttacatgggttgttttacaacaaaaaaagatacagagacaaaaaccaaaaagatgcgagcgtacaaggacgat 15348482  T
Q  342 ttacatatttaagcct 357  Q
    ||||||||||||||||    
T  15348483 ttacatatttaagcct 15348498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 6844109 - 6844157
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||||||||||||||||||||  ||||  |||||||||||||||||    
T  6844109 aaaaccaaaaacacgcgaacttacaaggaccttttacatatttaagcct 6844157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 356
Target Start/End: Complemental strand, 20587081 - 20587039
Alignment:
Q  314 caaaaacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    |||||||||||||| |||| |||||| ||||||||||||||||    
T  20587081 caaaaacacgcgaaattacagggacgttttacatatttaagcc 20587039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 20588476 - 20588518
Alignment:
Q  314 caaaaacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    |||||||||||||| |||| |||||| ||||||||||||||||    
T  20588476 caaaaacacgcgaaattacagggacgttttacatatttaagcc 20588518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 22054391 - 22054333
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||| ||| |||||||||||  ||||||||||| |||||  |||||||||||||||||    
T  22054391 tacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcct 22054333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 472767 - 472723
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaa 353  Q
    |||||| |||||| |||||||||| || |||||||||||||||||    
T  472767 aaaaccgaaaacaagcgaacttacaggaacgatttacatatttaa 472723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 187 - 353
Target Start/End: Original strand, 50316940 - 50317106
Alignment:
Q  187 cgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttag 286  Q
    |||||||||||  ||||||||||||||  | |||||||||||||| | |||||| ||||||||||| |||||||||| |||||||| ||| |||||||||    
T  50316940 cgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgacgggagggacgaaaatcaaaacgtttgtaacttacagggtttgttttag 50317039  T
Q  287 aacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaa 353  Q
    |||        |||||| ||| |||| |||||||||||||||||||  |||||||||||||||||||    
T  50317040 aacaaaaaaagatacagggacgaaaatcaaaaacacgcgaacttacatggacgatttacatatttaa 50317106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 218 - 362
Target Start/End: Original strand, 28920576 - 28920720
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||        |||||| ||||||||| |||    
T  28920576 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaggttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaacaaaa 28920675  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcctcaaaa 362  Q
    ||||||| || |||| ||||||| |||||||||||||||| ||||    
T  28920676 aacacgccaaattacagggacgacttacatatttaagcctaaaaa 28920720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 16673177 - 16673316
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||        |||||| ||| |||||||||    
T  16673177 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaaccaaa 16673276  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||| || |||| ||||||||||||||||||||||||    
T  16673277 aacacgcaaaattacagggacgatttacatatttaagcct 16673316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 186 - 356
Target Start/End: Original strand, 7185745 - 7185915
Alignment:
Q  186 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 285  Q
    |||||| ||||||| |||| ||||||||| |||||||||||||||| | ||||||||||||| |||| ||||| ||||||||||||| |||  |||||||    
T  7185745 tcgccatgtcagctgccgtcagacacataagtgtttttgtaacagatgctgacggaagggaccaaaagcaaaatgtttataacttacagggtctgtttta 7185844  T
Q  286 gaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    |||         |||||| ||| ||||| ||||||| || |||||||  ||||||||| ||||||||||||    
T  7185845 gaataaaaaaagatacagggacgaaaacaaaaaacatgcaaacttacaaggacgatttgcatatttaagcc 7185915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 187 - 356
Target Start/End: Original strand, 24438837 - 24439007
Alignment:
Q  187 cgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttag 286  Q
    |||||||||||  ||||||||||||||    |||||||||||||| | ||||||  |||||||||| |||||||||| |||||||| ||| |||||||||    
T  24438837 cgccacgtcagtcaccgttagacacatcaacgtttttgtaacagatgctgacgggtgggacgaaaatcaaaacgtttgtaacttacagggtttgttttag 24438936  T
Q  287 aac-nnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    |||         |||||| ||| ||||||||||||||||||| |||| |||||||||||||||||| ||||    
T  24438937 aacaaaaaaaagatacagggacgaaaaccaaaaacacgcgaatttacagggacgatttacatattttagcc 24439007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 218 - 363
Target Start/End: Original strand, 7655185 - 7655330
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||  ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||        |||||| ||| |||||||||    
T  7655185 gtttttgtaatggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacgaaaaccaaa 7655284  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcctcaaaat 363  Q
    ||||||| || |||| || ||||||||||||||||||||| |||||    
T  7655285 aacacgccaaattacaggaacgatttacatatttaagcctaaaaat 7655330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 218 - 362
Target Start/End: Complemental strand, 33258018 - 33257875
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||| ||| ||||||||||||        |||||  |||||||||||||    
T  33258018 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggg-ttgttttagaacaaaaaaagatacaaggacaaaaaccaaa 33257920  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcctcaaaa 362  Q
    ||||||| || |||| |||||||||||||||||||||||| ||||    
T  33257919 aacacgccaaattacagggacgatttacatatttaagccttaaaa 33257875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 218 - 362
Target Start/End: Complemental strand, 33278190 - 33278047
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||| ||| ||||||||||||        |||||  |||||||||||||    
T  33278190 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggg-ttgttttagaacaaaaaaagatacaaggacaaaaaccaaa 33278092  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcctcaaaa 362  Q
    ||||||| || |||| |||||||||||||||||||||||| ||||    
T  33278091 aacacgccaaattacagggacgatttacatatttaagccttaaaa 33278047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 186 - 353
Target Start/End: Original strand, 13211001 - 13211168
Alignment:
Q  186 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 285  Q
    ||||||| |||||| |||||||||||||| | ||||||||||| || | |||||| |||||  |||| |||||| |||||||||||| |||  |||||||    
T  13211001 tcgccacatcagctgccgttagacacataagcgtttttgtaacggatgatgacggcagggaataaaagcaaaacatttataacttacagggtctgtttta 13211100  T
Q  286 gaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaa 353  Q
    ||||        |||||| ||| |||||||||||||| | ||||||| |||| |||||||||||||||    
T  13211101 gaacaaaaagagatacagggacgaaaaccaaaaacacacaaacttacagggaagatttacatatttaa 13211168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 214 - 356
Target Start/End: Complemental strand, 41668415 - 41668273
Alignment:
Q  214 aggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaac 313  Q
    ||||||||||||||||||  ||||||| || |||||||| ||||| |||  |||||||| | ||||||||||||||       ||||||| ||| |||||    
T  41668415 aggtgtttttgtaacagagtttgacgggagagacgaaaagcaaaaagttattaacttacagaggttgttttagaacaaaaaaatatacagagacgaaaac 41668316  T
Q  314 caaaaacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    ||||||||||| || |||| | |||||||||||||||||||||    
T  41668315 caaaaacacgccaaattacagagacgatttacatatttaagcc 41668273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 218 - 357
Target Start/End: Complemental strand, 28919221 - 28919082
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||  |||||||  ||||||||||||||||        |||||| ||  |||| ||||    
T  28919221 gtttttgtaacggaagttgacggaagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggatgaaaatcaaa 28919122  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||| || |||| ||||| ||||| ||||||||||||    
T  28919121 aacacgccaaattacagggacaatttatatatttaagcct 28919082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 221 - 364
Target Start/End: Complemental strand, 33981639 - 33981496
Alignment:
Q  221 tttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaac 320  Q
    ||||||||| | |||||||| | ||||||||| |||||||||| ||||||||  |  ||||||||||||        |||||| ||  ||||||||||||    
T  33981639 tttgtaacacatgttgacgggatggacgaaaatcaaaacgtttgtaacttacatgatttgttttagaacaaaaaaagatacagagaataaaaccaaaaac 33981540  T
Q  321 acgcgaacttacggggacgatttacatatttaagcctcaaaata 364  Q
    || ||||||||  |||||||||||||||||||||||| ||||||    
T  33981539 acacgaacttatagggacgatttacatatttaagcctaaaaata 33981496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 36145481 - 36145343
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    |||||||||  ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||        |||||| ||| ||||| ||||    
T  36145481 tttttgtaatggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacaaaaa 36145382  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcct 357  Q
    | |||| || |||| ||||||||||||||||||||||||    
T  36145381 atacgccaaattacagggacgatttacatatttaagcct 36145343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 219 - 356
Target Start/End: Original strand, 33259294 - 33259431
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    |||||||||| ||||||||||| |||||||||||  |||| |||  |||||||  |||||||||||| |||        |||||| ||| ||||||||||    
T  33259294 tttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttataggggttgttttaaaacaaaaaaagatacagggacgaaaaccaaaa 33259393  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcc 356  Q
    |||||| || |||| ||||| |||||||||||||||||    
T  33259394 acacgccaaattacagggacaatttacatatttaagcc 33259431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 219 - 356
Target Start/End: Original strand, 33279453 - 33279590
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    |||||||||| ||||||||||| |||||||||||  |||| |||  |||||||  |||||||||||| |||        |||||| ||| ||||||||||    
T  33279453 tttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttataggggttgttttaaaacaaaaaaagatacagggacgaaaaccaaaa 33279552  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcc 356  Q
    |||||| || |||| ||||| |||||||||||||||||    
T  33279553 acacgccaaattacagggacaatttacatatttaagcc 33279590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 220 - 367
Target Start/End: Complemental strand, 19249455 - 19249310
Alignment:
Q  220 ttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaa 319  Q
    ||||||||||||  || |||||||||||||||| ||||| |||  |||||||| ||||||||||||||||        |||||  ||| |||||||||||    
T  19249455 ttttgtaacagagttttacggaagggacgaaaagcaaaa-gttattaacttaccggggttgttttagaacaaaaaaagatacaaagacgaaaaccaaaaa 19249357  T
Q  320 cacgcgaacttacggggacgatttacatatttaagcctcaaaataatt 367  Q
    ||  | || |||| |||||||||||||||||||||||| |||||||||    
T  19249356 caatccaaattacagggacgatttacatatttaagcct-aaaataatt 19249310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 288
Target Start/End: Original strand, 35973165 - 35973265
Alignment:
Q  188 gccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttaga 287  Q
    |||||||||||  ||||| | |||||||  |||||||||||||| | |||||| |  ||| ||||||||||||||||||||||||||| ||| |||||||    
T  35973165 gccacgtcagcctccgtttgccacatagacgtttttgtaacagatggtgacggcaatgaccaaaaccaaaacgtttataacttacgggagttattttaga 35973264  T
Q  288 a 288  Q
    |    
T  35973265 a 35973265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 19057788 - 19057859
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 289  Q
    |||||||||||||||||||||||||||||||||||  |||| |||  |||||||  ||||||||||||||||    
T  19057788 gtttttgtaacagaagttgacggaagggacgaaaataaaaaagttattaacttataggggttgttttagaac 19057859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 201 - 357
Target Start/End: Original strand, 22684054 - 22684210
Alignment:
Q  201 ccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntata 300  Q
    ||||||||||| | || |||||| |||||||||||||||| ||||||||||  ||||| |||   || |||| ||| ||||||||||||        |||    
T  22684054 ccgttagacactttggcgtttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaatttacagggtttgttttagaacaaaaaaagata 22684153  T
Q  301 cagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||  ||| ||||||||||||||||||||||||  ||||  |||||||||| ||||||    
T  22684154 catggacgaaaaccaaaaacacgcgaacttacaaggaccttttacatattaaagcct 22684210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 44268946 - 44268891
Alignment:
Q  298 atacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaa 353  Q
    |||||| || ||||||||||||||||||||||||| ||||||||||||||||||||    
T  44268946 atacagagataaaaaccaaaaacacgcgaacttacagggacgatttacatatttaa 44268891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 218 - 357
Target Start/End: Complemental strand, 50315456 - 50315317
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| |||||| |||  |||||| |||||||||| ||| | ||||||| |||   ||||||||||         ||||| ||| |||||||||    
T  50315456 gtttttgtaacggaagttaacgttagggactaaaaccaaaaggttaacaacttacagggtgagttttagaacaaaaaaacttacagagacgaaaaccaaa 50315357  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||||||||||| |||||  |||||||||||||||||    
T  50315356 aacacgcgaacttacagggaccttttacatatttaagcct 50315317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 24437211 - 24437073
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    ||||| ||||| ||||| |||  |||||| |||||||||| ||| | || |||| ||| ||||||||||||        |||||| ||| ||||| ||||    
T  24437211 tttttttaacaaaagttaacgttagggactaaaaccaaaaagttaacaatttacagggtttgttttagaacaaaaaaagatacagtgacgaaaacaaaaa 24437112  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||| |||||  |||||||||||||||||    
T  24437111 acacgcgaacttacagggaccttttacatatttaagcct 24437073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 348
Target Start/End: Original strand, 36146833 - 36146962
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  ||||||||  || ||||||||||||        |||||| ||| |||||||||    
T  36146833 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacatggattgttttagaacaaaaaaagatacag-gacgaaaaccaaa 36146931  T
Q  318 aacacgcgaacttacggggacgatttacata 348  Q
    ||||||  || |||| |||||||||||||||    
T  36146932 aacacgtcaaattacagggacgatttacata 36146962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 219 - 356
Target Start/End: Complemental strand, 7653823 - 7653686
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    |||||||||  ||||||||||| |||||| |||| ||||| |||  |||||||  |||| |||||||||||        |||||| ||| ||||| ||||    
T  7653823 tttttgtaatggaagttgacgggagggacaaaaatcaaaaagttattaacttataggggctgttttagaacaaaaaaagatacagggacgaaaacaaaaa 7653724  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcc 356  Q
    | |||| || |||| |||||||||||||||||||||||    
T  7653723 atacgccaaattacagggacgatttacatatttaagcc 7653686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 186 - 357
Target Start/End: Complemental strand, 7184492 - 7184322
Alignment:
Q  186 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 285  Q
    |||||||||||||| |||||||||| ||| |  ||||||||||| | | |||| | |||||| |||| || || | |||||| |||| |||  || ||||    
T  7184492 tcgccacgtcagctgccgttagaca-ataagcatttttgtaacatatgatgaccgtagggaccaaaagcataaggcttataatttacagggtctgcttta 7184394  T
Q  286 gaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||        |||||| ||| ||||||||||||||||||||||||  | || ||||||||||||||||||    
T  7184393 gaacaaaaaaagatacagagacgaaaaccaaaaacacgcgaacttacaagaacaatttacatatttaagcct 7184322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 188 - 289
Target Start/End: Complemental strand, 13209743 - 13209642
Alignment:
Q  188 gccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttaga 287  Q
    |||||||||||| || |||||||||||    ||||||||||||| | |||||| |||||| |||| ||||||||||||| ||||| |||  | |||||||    
T  13209743 gccacgtcagctgccattagacacataaacatttttgtaacagatggtgacggcagggaccaaaagcaaaacgtttatatcttacagggtctattttaga 13209644  T
Q  288 ac 289  Q
    ||    
T  13209643 ac 13209642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 10708077 - 10708029
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||||||||||||| |||||  |||||||||||||||||    
T  10708077 aaaaccaaaaacacgcgaacttacagggactttttacatatttaagcct 10708029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 31321067 - 31321003
Alignment:
Q  298 atacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcctcaaaa 362  Q
    |||||| ||| |||||||||||||||||||||||| |||| ||||||  ||||||||||| ||||    
T  31321067 atacagggacgaaaaccaaaaacacgcgaacttacagggatgatttaactatttaagcctaaaaa 31321003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 16672793 - 16672722
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 289  Q
    ||||||||||| ||||||||||| ||||||| ||| ||||| |||  |||||||  ||||||||||||||||    
T  16672793 gtttttgtaacggaagttgacgggagggacggaaatcaaaaagttattaacttataggggttgttttagaac 16672722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 357
Target Start/End: Complemental strand, 18309223 - 18309084
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    |||||||||| ||| | |||||  ||| || ||||||||||||||||||||||||  || ||||||||||||        |||||| ||| |||| ||||    
T  18309223 gtttttgtaatagacgatgacgacaggaaccaaaaccaaaacgtttataacttacaaggattgttttagaacaaaaaaagatacagggacgaaaatcaaa 18309124  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    | |||  ||| |||  ||||||||||||| ||||||||||    
T  18309123 atcacaagaatttagagggacgatttacaaatttaagcct 18309084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 16592079 - 16592022
Alignment:
Q  298 atacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagc 355  Q
    |||||| ||| |||||||||||||||| || |||| ||||| ||||||||||||||||    
T  16592079 atacagggacgaaaaccaaaaacacgccaaattacagggacaatttacatatttaagc 16592022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 12097941 - 12098000
Alignment:
Q  298 atacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||| ||| |||||||||||  |||||||||||||||||  ||||| |||||||||||    
T  12097941 atacagggactaaaaccaaaaatgcgcgaacttacggggaccttttacttatttaagcct 12098000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 271
Target Start/End: Complemental strand, 33981716 - 33981645
Alignment:
Q  200 accgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataactta 271  Q
    ||||||||||||||   ||||||||||| ||| | |||||| ||| ||||||| |||||||||| |||||||    
T  33981716 accgttagacacatcaatgtttttgtaatagatgctgacgggaggtacgaaaatcaaaacgtttgtaactta 33981645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 44269086 - 44269133
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    |||| |||||||||||||| |||| | |||||||||||||||||||||    
T  44269086 aaaatcaaaaacacgcgaatttacagagacgatttacatatttaagcc 44269133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 46604486 - 46604439
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    |||||||||||||||| ||||||| |||||  ||||||||||||||||    
T  46604486 aaaaccaaaaacacgcaaacttacagggaccttttacatatttaagcc 46604439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 46652798 - 46652841
Alignment:
Q  314 caaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||| |||| |||||| |||||||||||||||||    
T  46652798 caaaaacacgcgaaattacagggacgttttacatatttaagcct 46652841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 8323441 - 8323499
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||| ||| |||||||||||  ||||||||||| |||||  |||||||||||||||||    
T  8323441 tacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcct 8323499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 31815772 - 31815830
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||| ||| |||||||||||  ||||||||||| |||||  |||||||||||||||||    
T  31815772 tacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcct 31815830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 26734473 - 26734416
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcctcaaaataat 366  Q
    |||||||||||  |||||||||||  ||||  ||||||||||||||||| ||||||||    
T  26734473 aaaaccaaaaatgcgcgaacttacatggaccttttacatatttaagcctaaaaataat 26734416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 1969685 - 1969645
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaa 258  Q
    ||||||||||| ||||||||||| ||||||||||| |||||    
T  1969685 gtttttgtaacggaagttgacgggagggacgaaaatcaaaa 1969645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 9626525 - 9626469
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagc 355  Q
    ||||| ||| ||||| ||||| |||||||||||| |||||  |||||||||||||||    
T  9626525 tacagggacgaaaacaaaaaatacgcgaacttacagggaccttttacatatttaagc 9626469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 129 - 357
Target Start/End: Original strand, 1650041 - 1650270
Alignment:
Q  129 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 228  Q
    ||||||||| |||  ||||||||||| ||| |||| ||| |||||||||  ||| ||||||| | |||||  ||||||||||| ||||||||||||||||    
T  1650041 taatatagttagagatcatctgtcacgacacataaatgtattttgccacatcattcttcgccgcatcagcggccgttagacacgtaggtgtttttgtaac 1650140  T
Q  229 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaa-cnnnnnnntatacagcgacaaaaaccaaaaacacgcgaa 327  Q
    ||||||||||   |||||||||||||||||| ||||||||  ||  ||||||||||||||          |||||   || ||||| |||||||||||||    
T  1650141 agaagttgacatgagggacgaaaaccaaaacatttataacaaacaagggttgttttagaataaaaaaaagatacatgaacgaaaactaaaaacacgcgaa 1650240  T
Q  328 cttacggggacgatttacatatttaagcct 357  Q
    |||||  ||||| |||||||||||||||||    
T  1650241 cttacaaggacggtttacatatttaagcct 1650270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 209 - 357
Target Start/End: Original strand, 39885988 - 39886136
Alignment:
Q  209 cacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgaca 308  Q
    |||||||  ||||||||||||||   |||||| |||||| |||||||||| | ||||||||||| |||||||||||||||         |||||| |||     
T  39885988 cacatagacgtttttgtaacagattatgacggcagggactaaaaccaaaatgcttataacttacaggggttgttttagaataaaaaaagatacagggact 39886087  T
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  39886088 aaaaccaaaaacacgcgaacttacagggaccatttacatatttaagcct 39886136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 186 - 357
Target Start/End: Original strand, 3157926 - 3158097
Alignment:
Q  186 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 285  Q
    |||||| |||||||  ||| ||||||| | | |||| ||||||||| | |||||| ||||||  ||| ||||| ||||||||||||| |||  |||||||    
T  3157926 tcgccatgtcagctgtcgtcagacacaaaagcgtttgtgtaacagatgctgacggcagggaccgaaagcaaaatgtttataacttacagggtctgtttta 3158025  T
Q  286 gaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||        |||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3158026 gaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttacagggacgatttacatatttaagcct 3158097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 186 - 354
Target Start/End: Complemental strand, 5462104 - 5461936
Alignment:
Q  186 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 285  Q
    |||||| ||||||| |||| | ||||||| | |||||||||||||| | |||||| |||||| |||| ||||| |||||||| |||| |||  |||||||    
T  5462104 tcgccatgtcagctgccgtcatacacataagcgtttttgtaacagatgctgacggcagggaccaaaagcaaaatgtttataaattacagggtctgtttta 5462005  T
Q  286 gaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaag 354  Q
    ||||        |||||  ||| ||||| |||||||||||||||||||| |||||||||||||||||||    
T  5462004 gaacaaaaaaagatacaaagacgaaaacaaaaaacacgcgaacttacggtgacgatttacatatttaag 5461936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 209 - 357
Target Start/End: Complemental strand, 39884763 - 39884615
Alignment:
Q  209 cacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgaca 308  Q
    |||||||  ||||||||||||||   ||| || |||||| |||||||||| | |||||||||||  ||||| |||||||||        |||||| |||     
T  39884763 cacatagacgtttttgtaacagattatgaaggcagggactaaaaccaaaatgcttataacttacaagggttattttagaacaaaaaaagatacagggact 39884664  T
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  39884663 aaaaccaaaaacacgcgaacttacagggaccatttacatatttaagcct 39884615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 186 - 355
Target Start/End: Original strand, 15279522 - 15279691
Alignment:
Q  186 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 285  Q
    |||||||||||||| |||||||||||||| |  ||||||||||||| | |||||| |||||| |||| || || | |||||| || | |||  |||||||    
T  15279522 tcgccacgtcagctgccgttagacacataagcatttttgtaacagatgatgacggtagggaccaaaagcataaggcttataatttgcagggtctgtttta 15279621  T
Q  286 gaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagc 355  Q
     |||        |||||  ||| ||||||||||||||||||||||||  |||||||||||||||||||||    
T  15279622 aaacaaaaaaagatacaatgacgaaaaccaaaaacacgcgaacttacaaggacgatttacatatttaagc 15279691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 186 - 355
Target Start/End: Original strand, 15459891 - 15460060
Alignment:
Q  186 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 285  Q
    |||||||||||||| |||||||||||||| |  ||||||||||||| | |||||| |||||| |||| || || | |||||| || | |||  |||||||    
T  15459891 tcgccacgtcagctgccgttagacacataagcatttttgtaacagatgatgacggtagggaccaaaagcataaggcttataatttgcagggtctgtttta 15459990  T
Q  286 gaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagc 355  Q
     |||        |||||  ||| ||||||||||||||||||||||||  |||||||||||||||||||||    
T  15459991 aaacaaaaaaagatacaatgacgaaaaccaaaaacacgcgaacttacaaggacgatttacatatttaagc 15460060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 200 - 355
Target Start/End: Complemental strand, 2552562 - 2552408
Alignment:
Q  200 accgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntat 299  Q
    ||||| ||||||||  |||||||||||||| | |||||||| | ||||||||| |||||| ||| |||||||||||| ||||||||||||        ||    
T  2552562 accgtcagacacatcagtgtttttgtaacaaatgttgacgggaaggacgaaaatcaaaacatttgtaacttacggggtttgttttagaacaaaaaag-at 2552464  T
Q  300 acagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagc 355  Q
     ||| ||| | || ||||||||||| ||||||| | ||||||||||||||||||||    
T  2552463 gcagggacgataatcaaaaacacgcaaacttacagagacgatttacatatttaagc 2552408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 218 - 357
Target Start/End: Complemental strand, 25264478 - 25264339
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  ||| |||| ||| |||||||| |||        |||||  ||| |||||||||    
T  25264478 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaatttacagggattgttttaaaacaaaaaaagatacaaggacgaaaaccaaa 25264379  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||| || |||| ||||||||||||||||||||||||    
T  25264378 aacacgccaaattacagggacgatttacatatttaagcct 25264339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 33295367 - 33295505
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||| ||| ||||| |||  ||||||||  |||||||||||||||        |||||| ||||||||| |||    
T  33295367 gtttttgtaacggaagttgacgggagggacggaaatcaaaaagttattaacttacaagggttgttttagaacaaaaaag-atacagggacaaaaacaaaa 33295465  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||| || |||| | ||||||||||||||||||||||    
T  33295466 aacacgccaaattacagagacgatttacatatttaagcct 33295505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 22714006 - 22714109
Alignment:
Q  254 caaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaa 353  Q
    ||||||||||| ||||||| ||||||||||||| ||        |||||| ||| |||||||||||||| ||||||||| ||| ||||||||||||||||    
T  22714006 caaaacgtttagaacttaccggggttgttttaggacaaaaaaaaatacagggacgaaaaccaaaaacacacgaacttacaggggcgatttacatatttaa 22714105  T
Q  354 gcct 357  Q
    ||||    
T  22714106 gcct 22714109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 218 - 356
Target Start/End: Original strand, 25265826 - 25265964
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||| |||||||| |||        |||||| ||| ||||| |||    
T  25265826 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatagggattgttttaaaacaaaaaaagatacagggacgaaaacaaaa 25265925  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    ||||||| || |||| | |||||||||||||||||||||    
T  25265926 aacacgccaaattacagagacgatttacatatttaagcc 25265964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 26720201 - 26720308
Alignment:
Q  249 aaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacata 348  Q
    ||||||||||| |||||||||||| ||||||||||   |||       ||| ||| ||| ||||||||||||||||||||||| |||||  |||||||||    
T  26720201 aaaaccaaaacatttataacttacaggggttgtttcgcaacaaaaaa-tatgcagggacgaaaaccaaaaacacgcgaacttatggggattatttacata 26720299  T
Q  349 tttaagcct 357  Q
    |||||||||    
T  26720300 tttaagcct 26720308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 33294078 - 33294007
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 289  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  ||| |||  ||||||||||||||||    
T  33294078 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaatttataggggttgttttagaac 33294007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 45448504 - 45448551
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    |||||||||||||||||||||||  |||||  ||||||||||||||||    
T  45448504 aaaaccaaaaacacgcgaacttagagggaccttttacatatttaagcc 45448551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 358034 - 357976
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||| ||| |||||||||||  ||||||||||| |||||  |||||||||||||||||    
T  358034 tacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcct 357976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 17707450 - 17707508
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||| ||| |||||||||||||||| || ||||  |||| ||||||||||||||||||    
T  17707450 tacagggactaaaaccaaaaacacgctaaattacatggaccatttacatatttaagcct 17707508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 36899955 - 36899897
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||| ||| |||||||||||||||| || |||| |||||  |||||||||||||||||    
T  36899955 tacagggactaaaaccaaaaacacgctaaattacagggaccttttacatatttaagcct 36899897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 2552764 - 2552800
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttac 345  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  2552764 aaaacaaaaaacacgcgaacttacagggacgatttac 2552800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 17706212 - 17706164
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||||| || |||| |||||  |||||||||||||||||    
T  17706212 aaaaccaaaaacacgctaaattacagggaccttttacatatttaagcct 17706164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 218 - 357
Target Start/End: Complemental strand, 2189 - 2050
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    |||||||||||||||||| |||  |||||| |||||||||||||||||||||||||||||||||||||||||        |||||| |||  ||||||||    
T  2189 gtttttgtaacagaagttaacgttagggactaaaaccaaaacgtttataacttacgggggttgttttagaacaaaaaaagatacagggacggaaaccaaa 2090  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||||  ||||  ||| |||||||||||||    
T  2089 aacacgcgaacttacaaggacatttttcatatttaagcct 2050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 218 - 366
Target Start/End: Complemental strand, 8745570 - 8745422
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||||||  ||||||| ||||||||||| ||||| |||  |||||||||||||||||||||||||        ||| || ||| |||||||||    
T  8745570 gtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacgggggttgttttagaacaaaaaaagatatagggacgaaaaccaaa 8745471  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcctcaaaataat 366  Q
    ||||||| || |||| |||||||||||||||||||||||  ||||||||    
T  8745470 aacacgccaaattacagggacgatttacatatttaagccataaaataat 8745422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 222 - 355
Target Start/End: Original strand, 19084045 - 19084178
Alignment:
Q  222 ttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaaca 321  Q
    ||||||| ||||||||||| ||||||||||| ||||| |||  |||| ||| ||||||||||||||||        |||||| |||||||||||||||||    
T  19084045 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacatacaggggttgttttagaacaaaaaaagatacagggacaaaaaccaaaaaca 19084144  T
Q  322 cgcgaacttacggggacgatttacatatttaagc 355  Q
    ||| || |||| |||||| |||||||||||||||    
T  19084145 cgctaaattacagggacggtttacatatttaagc 19084178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 1258360 - 1258500
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttat-aacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaa 316  Q
    ||||||||||||||  ||||||| ||||||||||| ||||| |||||| ||| ||  ||||||||||||||||        |||||| ||| ||||||||    
T  1258360 gtttttgtaacagagtttgacgggagggacgaaaagcaaaaagtttattaacctataggggttgttttagaacaaaaaaagatacagggacgaaaaccaa 1258459  T
Q  317 aaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||| || |||| ||||||||||||||||||||||||    
T  1258460 aaacacgccaaattacagggacgatttacatatttaagcct 1258500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 219 - 366
Target Start/End: Complemental strand, 1256851 - 1256704
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    |||||||||||||  ||||||| |||||||||||  |||| |||  |||||||  |||||||||||||||         |||||| ||| ||||||||||    
T  1256851 tttttgtaacagagtttgacgggagggacgaaaagtaaaaagttattaacttataggggttgttttagaataaaaaaagatacagggacgaaaaccaaaa 1256752  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcctcaaaataat 366  Q
    |||||| || ||||  ||||||||||||||||||||||| ||||||||    
T  1256751 acacgccaaattacaaggacgatttacatatttaagccttaaaataat 1256704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 218 - 355
Target Start/End: Original strand, 2956156 - 2956293
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||||||  ||||||| ||||||||||| ||||| |||  ||||||||||| |||||||||||||        |||||  ||| |||||||||    
T  2956156 gtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacgggagttgttttagaacaaaaaaagatacaaggacgaaaaccaaa 2956255  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagc 355  Q
    |||||   || |||| ||||||||||||||||||||||    
T  2956256 aacacatcaaattacagggacgatttacatatttaagc 2956293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 218 - 357
Target Start/End: Complemental strand, 10707807 - 10707675
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||||||   ||| || |||||| |||||||||||||||||||||||||||||||||| |||||         |||||| ||| ||||  |||    
T  10707807 gtttttgtaacaga---tgatggtagggaccaaaaccaaaacgtttataacttacgggggttgttatagaa----aaaaaatacagggacgaaaataaaa 10707715  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||||||||||| ||||| ||||| ||||||||||||    
T  10707714 aacacgcgaacttacagggacaatttatatatttaagcct 10707675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 218 - 354
Target Start/End: Original strand, 8752721 - 8752857
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    |||||||||||| |  ||||||| ||||||||||| ||||| |||  |||||| | ||||||||||||||||        |||||| ||| |||||||||    
T  8752721 gtttttgtaacaaagtttgacgggagggacgaaaagcaaaaggttattaacttgcaggggttgttttagaacaaaaaaagatacagggacgaaaaccaaa 8752820  T
Q  318 aacacgcgaacttacggggacgatttacatatttaag 354  Q
    ||||||| || |||| | |||||||||||||||||||    
T  8752821 aacacgccaaattacagagacgatttacatatttaag 8752857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 190 - 356
Target Start/End: Complemental strand, 1443583 - 1443417
Alignment:
Q  190 cacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 289  Q
    |||| |||| ||||||||||||||    |||||| ||||| ||||| |||  |||||| |||||||||| ||| | ||||||| ||| ||||||||||||    
T  1443583 cacgccagccaccgttagacacatcaacgtttttttaacaaaagttaacgttagggactaaaaccaaaaagttaacaacttaccgggtttgttttagaac 1443484  T
Q  290 nnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcc 356  Q
            |||||| ||| ||||||||||||||| |||||||| |||||  || |||||||||||||    
T  1443483 aaaaaaaaatacagggacgaaaaccaaaaacacgtgaacttacagggacctttcacatatttaagcc 1443417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 7678655 - 7678707
Alignment:
Q  305 gacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||| ||||||||||| || |||| ||||||||||||||||||||||||    
T  7678655 gacaaaaagcaaaaacacgccaaattacagggacgatttacatatttaagcct 7678707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 354
Target Start/End: Original strand, 10699891 - 10699996
Alignment:
Q  249 aaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacata 348  Q
    ||||||||||||||||||||||||  |||||||||||||||        |||||  |||||| || ||||||||||||||||||  | || ||| |||||    
T  10699891 aaaaccaaaacgtttataacttacaagggttgttttagaacaaaaaaagatacatggacaaatacaaaaaacacgcgaacttacacgaacaattcacata 10699990  T
Q  349 tttaag 354  Q
    ||||||    
T  10699991 tttaag 10699996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 19082804 - 19082733
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 289  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||   |||||||||||||||    
T  19082804 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatatgggttgttttagaac 19082733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 7796806 - 7796748
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||| |||||||||||||||  ||||||||||| |||||  |||||||||||||||||    
T  7796806 tacagggacaaaaaccaaaaatgcgcgaacttactgggaccttttacatatttaagcct 7796748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 7678563 - 7678618
Alignment:
Q  217 tgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttac 272  Q
    ||||||||||||||||| | |||| ||||||||||| ||||||||| | |||||||    
T  7678563 tgtttttgtaacagaagctaacgggagggacgaaaagcaaaacgttaacaacttac 7678618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 10699344 - 10699297
Alignment:
Q  242 agggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 289  Q
    |||||| |||| ||||||||||||||||||| | ||||||||||||||    
T  10699344 agggaccaaaatcaaaacgtttataacttacagaggttgttttagaac 10699297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 4296328 - 4296398
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 289  Q
    ||||||||| ||| | |||||| | |||| ||||||||||||||||||||||||  || || |||||||||    
T  4296328 tttttgtaatagatgatgacggcatggaccaaaaccaaaacgtttataacttacacggtttattttagaac 4296398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 843532 - 843581
Alignment:
Q  308 aaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||||||||  ||||||||||| |||||  |||||||||||||||||    
T  843532 aaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcct 843581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 19596390 - 19596342
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||  ||||||||||  ||||| ||||||||||||||||||    
T  19596390 aaaaccaaaaatgcgcgaacttatagggacaatttacatatttaagcct 19596342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 19597989 - 19598037
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||  |||| |||||| ||||| ||||||||||||||||||    
T  19597989 aaaaccaaaaatgcgcggacttacagggaccatttacatatttaagcct 19598037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 28049031 - 28048979
Alignment:
Q  305 gacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||||||||||||||||| | |||  || | ||||||||||||    
T  28049031 gacaaaaaccaaaaacacgcgaacttacagagacctttgatatatttaagcct 28048979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 218 - 357
Target Start/End: Complemental strand, 19994636 - 19994497
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||        |||||| ||| |||||||||    
T  19994636 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaaccaaa 19994537  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||| || |||| ||||||||||||||||||||||||    
T  19994536 aacacgccaaattacagggacgatttacatatttaagcct 19994497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 19995975 - 19996114
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| |||||||| || ||||||||||| ||||| |||  |||||||| ||||||||||||||||        |||||| ||| |||||||||    
T  19995975 gtttttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggaccaaaaccaaa 19996074  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||| || |||| ||||||||||||||||||||||||    
T  19996075 aacacgccaaattacagggacgatttacatatttaagcct 19996114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 186 - 357
Target Start/End: Original strand, 42889700 - 42889870
Alignment:
Q  186 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 285  Q
    |||||| |||||||  ||| ||||||||| | |||||||||||||| |||||||| |||||| |||| ||||| |||||||||||||  ||  |||||||    
T  42889700 tcgccatgtcagctgtcgtcagacacataagcgtttttgtaacaga-gttgacggcagggaccaaaagcaaaatgtttataacttacatggtctgtttta 42889798  T
Q  286 gaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||        |||||  ||| ||||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  42889799 gaacaaaaaaagatacaaggacgaaaacaaaaaacacgtgaacttacagggacgatttacatatttaagcct 42889870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 218 - 357
Target Start/End: Complemental strand, 44251743 - 44251604
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  ||||||||  |||||||||||||||        |||||  ||| |||||||||    
T  44251743 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaagggttgttttagaacaaaaaaagatacaaggacgaaaaccaaa 44251644  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||| || |||| ||||||||||||||||||||||||    
T  44251643 aacacgccaaattacagggacgatttacatatttaagcct 44251604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 48713383 - 48713522
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||||||  ||||| | ||||||||||| ||||| |||  |||||||| ||||||||||||||||        |||||| ||| |||||||||    
T  48713383 gtttttgtaacagagtttgactggagggacgaaaagcaaaaggttattaacttacaggggttgttttagaacaaaaaaagatacagggacgaaaaccaaa 48713482  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||| || |||| ||||||||||||||||||||||||    
T  48713483 aacacgccaaattacagggacgatttacatatttaagcct 48713522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 54123466 - 54123605
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    |||||||| |||||  ||||||| ||||||||||| ||||| |||  |||||||| || |||||||||||||       ||||||| ||| |||||||||    
T  54123466 gtttttgttacagagtttgacgggagggacgaaaagcaaaaagttattaacttacaggagttgttttagaacaaaaaaatatacagggacgaaaaccaaa 54123565  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||| || || |||| ||||||||||||||||||||||||    
T  54123566 aacatgccaaattacagggacgatttacatatttaagcct 54123605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 55948874 - 55949013
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||| ||||| | ||| |||  |||||||| ||||||||||||||||        |||||| ||| |||||||||    
T  55948874 gtttttgtaacggaagttgacgggagggaagaaaatccaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacgaaaaccaaa 55948973  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||| || ||||  |||||||||||||||||||||||    
T  55948974 aacacgccaaattacaaggacgatttacatatttaagcct 55949013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 188 - 353
Target Start/End: Original strand, 54536587 - 54536753
Alignment:
Q  188 gccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttaga 287  Q
    |||||||||||| ||||||||||||||   |||||||||||||| | |||| | |||||| |||| |||||||||||||| ||||  ||  |||||||||    
T  54536587 gccacgtcagctgccgttagacacataaacgtttttgtaacagatggtgacagcagggaccaaaagcaaaacgtttataatttacatggtctgttttaga 54536686  T
Q  288 ac-nnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaa 353  Q
    ||         |||||  |||||||||||| |||||||||| |||| ||||||||||||||||||||    
T  54536687 acaaaaaaaagatacatggacaaaaaccaagaacacgcgaatttacagggacgatttacatatttaa 54536753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 218 - 367
Target Start/End: Complemental strand, 42977336 - 42977187
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||||||  ||||||| ||||||||||| ||||| |||  |||||||   |||||||||||||||        |||||| ||| |||||||||    
T  42977336 gtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttaaatgggttgttttagaacaaaaaaagatacagggacgaaaaccaaa 42977237  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcctcaaaataatt 367  Q
    ||||||| || ||||  |||||||||||||||||||||||  ||||||||    
T  42977236 aacacgccaaattacaaggacgatttacatatttaagcctttaaataatt 42977187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 209 - 357
Target Start/End: Complemental strand, 22307818 - 22307670
Alignment:
Q  209 cacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgaca 308  Q
    |||||||  ||||||||||||||   |||||| |||||| |||||||||| | |||||||||||  |||||||||||||||        |||||| |||     
T  22307818 cacatagacgtttttgtaacagattatgacggcagggactaaaaccaaaatgcttataacttacaagggttgttttagaacaaaaaacgatacagggact 22307719  T
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||||||||| |||||||||| |||||  ||| |||||||||||||    
T  22307718 aaaaccaaaaacatgcgaacttacagggaccttttgcatatttaagcct 22307670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 209 - 353
Target Start/End: Original strand, 22309050 - 22309194
Alignment:
Q  209 cacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgaca 308  Q
    |||||||  ||||||||||| ||   |||||| | |||| |||||||||| | ||||||||||| |||||||||||||||         |||||| |||     
T  22309050 cacatagacgtttttgtaactgattatgacggcacggactaaaaccaaaatgcttataacttacaggggttgttttagaataaaaaaagatacagggact 22309149  T
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaa 353  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  22309150 aaaaccaaaaacacgcgaacttacagggaccatttacatatttaa 22309194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 218 - 357
Target Start/End: Complemental strand, 18597770 - 18597631
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||||| |||||||||||||         |||||| ||| |||||||||    
T  18597770 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacggaggttgttttagaataaaaaaagatacagggacgaaaaccaaa 18597671  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||  || ||||  |||||||||| ||||||||||||    
T  18597670 aacacggcaaattacatggacgatttaaatatttaagcct 18597631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 44253113 - 44253252
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||| ||||||||||| || |||||||| ||||| |||  |||||||  ||||||||||||||||        ||| || ||| |||||||||    
T  44253113 gtttttgtaacggaagttgacgggagagacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatatagggacgaaaaccaaa 44253212  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||| || |||  ||||||||||||||||||||||||    
T  44253213 aacacgccaaattaaagggacgatttacatatttaagcct 44253252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 186 - 353
Target Start/End: Complemental strand, 54535148 - 54534981
Alignment:
Q  186 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 285  Q
    ||||||||| |||| |||||||||||||| | |||||| |||  || |  ||||| |||||| |||| |||||| ||||||| ||||||||  | |||||    
T  54535148 tcgccacgtaagctgccgttagacacataagcgtttttataatggatgaagacggtagggacaaaaagcaaaacatttataatttacggggtctatttta 54535049  T
Q  286 gaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaa 353  Q
    ||||        | |||| ||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  54535048 gaacaaaaaaagacacagggacgaaaaccaaaaacacgcgaacttacatggacgatttacatatttaa 54534981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 354
Target Start/End: Complemental strand, 10337259 - 10337106
Alignment:
Q  200 accgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntat 299  Q
    |||||||| |||| ||| || |||||||||||  ||||||| ||||| ||||| ||||| |||  |||||||| ||||||||||||||||        ||    
T  10337259 accgttagccaca-aggcgtctttgtaacagagtttgacgggagggatgaaaagcaaaaggttattaacttacaggggttgttttagaacaaaaaaagat 10337161  T
Q  300 acagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaag 354  Q
    |||  ||| |||||||||||||||| || |||| |||||||||||||||||||||    
T  10337160 acaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaag 10337106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 218 - 373
Target Start/End: Original strand, 10338089 - 10338246
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnnta--tacagcgacaaaaacca 315  Q
    ||||||||||||||  ||||||| ||||||||||| ||||| |||  |||||||| |||||||||||| |||        |  ||||| |||||||||||    
T  10338089 gtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacaggggttgttttaaaacaaaaaaaaagatacagagacaaaaacca 10338188  T
Q  316 aaaacacgcgaacttacggggacgatttacatatttaagcctcaaaataattgtaaaa 373  Q
    ||||||||| || ||||  ||||||||||||||||||| ||| ||||| ||| |||||    
T  10338189 aaaacacgcaaaattacatggacgatttacatatttaaaccttaaaattattttaaaa 10338246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 218 - 356
Target Start/End: Original strand, 32082554 - 32082692
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||||||  ||||| | ||||||||||| ||||| |||  |||||||| |||||| |||||||||        |||||| ||| |||||||||    
T  32082554 gtttttgtaacagagtttgacaggagggacgaaaagcaaaaagttattaacttacaggggttattttagaacaaaaaaagatacagggacgaaaaccaaa 32082653  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    ||||||| || ||||  ||||||||||||||||||||||    
T  32082654 aacacgccaaattacacggacgatttacatatttaagcc 32082692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 42978840 - 42978979
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    ||||||||||||||  ||||||| ||||||||||| |||||  ||  ||||||||  || ||||||||||||        |||||| ||| |||||||||    
T  42978840 gtttttgtaacagagtttgacgggagggacgaaaagcaaaaaattattaacttacaaggattgttttagaacaaaaaaagatacagggacgaaaaccaaa 42978939  T
Q  318 aacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||||| || ||||  |||||||||||||||||||||||    
T  42978940 aacacgccaaattacaaggacgatttacatatttaagcct 42978979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 252 - 356
Target Start/End: Complemental strand, 24919156 - 24919052
Alignment:
Q  252 accaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatattt 351  Q
    |||||| |||||||||||||| ||||||||||||||||        ||||||  || || ||||||||||||| ||||||| || |||||||||||||||    
T  24919156 accaaagcgtttataacttacaggggttgttttagaacaaaaaaagatacaggaacgaagaccaaaaacacgcaaacttacaggtacgatttacatattt 24919057  T
Q  352 aagcc 356  Q
    |||||    
T  24919056 aagcc 24919052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 9561965 - 9561854
Alignment:
Q  237 acggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacgggg 336  Q
    ||||||||||  || |||||||| |||||||||||| | ||||||||||||          |||||| ||| |||||||||||||||||||||||| |||    
T  9561965 acggaagggatcaataccaaaacatttataacttacagaggttgttttagataaaaaaaagatacagagacgaaaaccaaaaacacgcgaacttacaggg 9561866  T
Q  337 acgatttacata 348  Q
    ||||||||||||    
T  9561865 acgatttacata 9561854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 218 - 354
Target Start/End: Complemental strand, 53355238 - 53355100
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttaga--acnnnnnnntatacagcgacaaaaacca 315  Q
    ||||||||||| | ||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||  ||        |||||| ||||||||| |    
T  53355238 gtttttgtaacggcagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacacaaaaaaaaatacagagacaaaaacaa 53355139  T
Q  316 aaaacacgcgaacttacggggacgatttacatatttaag 354  Q
    ||||||| | || |||| ||||| |||||||||||||||    
T  53355138 aaaacacaccaaattacagggacaatttacatatttaag 53355100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 55947497 - 55947359
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    ||||| |||| ||||||||||| ||||||||||| ||||| |||  |||||||  |||| ||||||| |||        |||||| ||| ||||||||||    
T  55947497 tttttataacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggctgttttataacaaaaaaagatacagggacgaaaaccaaaa 55947398  T
Q  319 acacgcgaacttacggggacgatttacatatttaagcct 357  Q
    | |||  || |||| ||||||||||||||||||||||||    
T  55947397 atacgtcaaattacagggacgatttacatatttaagcct 55947359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 18597855 - 18597914
Alignment:
Q  298 atacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||| ||| |||||||||||||||| || |||| ||||||||||||||||||||||||    
T  18597855 atacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 18597914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 218 - 353
Target Start/End: Complemental strand, 33607606 - 33607471
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaa 317  Q
    |||||| ||||||| ||| |||  |||||| |||||||||| ||||| ||||||| ||| |||||||||||         |||||  ||| |||||||||    
T  33607606 gtttttctaacagatgttaacgttagggactaaaaccaaaatgtttacaacttacagggtttgttttagaaaaaaaaaagatacaaggacgaaaaccaaa 33607507  T
Q  318 aacacgcgaacttacggggacgatttacatatttaa 353  Q
    ||||||||||||||| | |||  |||||||||||||    
T  33607506 aacacgcgaacttacagagaccttttacatatttaa 33607471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 38157077 - 38157023
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaa 353  Q
    ||||| ||| |||||||||||||||||||||||| |||| |||||||||||||||    
T  38157077 tacagggacgaaaaccaaaaacacgcgaacttacagggatgatttacatatttaa 38157023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 54121965 - 54121894
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 289  Q
    ||||||||||||||  || |||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  54121965 gtttttgtaacagagtttaacgggagggacgaaaagcaaaaagttattaacttacaggggttgttttagaac 54121894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 33609356 - 33609402
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagc 355  Q
    |||||||||||||||||||||||| |||||  |||||||||||||||    
T  33609356 aaaaccaaaaacacgcgaacttacagggaccttttacatatttaagc 33609402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 353
Target Start/End: Complemental strand, 55017781 - 55017743
Alignment:
Q  315 aaaaacacgcgaacttacggggacgatttacatatttaa 353  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  55017781 aaaaacacgcgaacttacagggacgatttacatatttaa 55017743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 25351721 - 25351791
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 289  Q
    ||||||||||| || | |||| | |||||| ||||||||||||||||||||||||  ||||| |||||||||    
T  25351721 gtttttgtaactgatgatgacagcagggaccaaaaccaaaacgtttataacttac-agggttattttagaac 25351791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 3069061 - 3068991
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 289  Q
    ||||||||||||| | | |||| ||||||||||| |||||| ||| ||| |||| ||| ||||||||||||    
T  3069061 tttttgtaacagatgctaacgggagggacgaaaatcaaaacatttgtaatttacagggattgttttagaac 3068991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 4906186 - 4906128
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||| ||| |||||||||||  ||||||||||| |||||  |||||||||||||||||    
T  4906186 tacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcct 4906128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 4932055 - 4931998
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcc 356  Q
    ||||| ||| |||||||||||  ||||||||||| |||||  ||||||||||||||||    
T  4932055 tacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcc 4931998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 4933343 - 4933391
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||  ||||||||||| |||||  |||||||||||||||||    
T  4933343 aaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcct 4933391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 29756319 - 29756271
Alignment:
Q  309 aaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||  ||||||||||| |||||  |||||||||||||||||    
T  29756319 aaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcct 29756271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 234 - 356
Target Start/End: Original strand, 6831 - 6953
Alignment:
Q  234 ttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaacacgcgaacttacg 333  Q
    ||||||| || |||||||| ||||| |||  |||||||| | ||||||||||||||       ||||||| ||| |||||||||||||||| || ||||     
T  6831 ttgacgggagagacgaaaagcaaaaagttattaacttacagaggttgttttagaacaaaaaaatatacagagacgaaaaccaaaaacacgccaaattaca 6930  T
Q  334 gggacgatttacatatttaagcc 356  Q
    | |||||||||||||||||||||    
T  6931 gagacgatttacatatttaagcc 6953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1118 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1118
Description:

Target: scaffold1118; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 348
Target Start/End: Complemental strand, 2549 - 2420
Alignment:
Q  219 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaa 318  Q
    ||||||||||||||||| |||  |||||| ||||||||||||  |||||||||| |||||||||||| ||         ||| || ||| ||||||||||    
T  2549 tttttgtaacagaagttaacgttagggactaaaaccaaaacgcgtataacttacaggggttgttttaaaataaaaaaagatatagggacgaaaaccaaaa 2450  T
Q  319 acacgcgaacttacggggacgatttacata 348  Q
    |||||||||||||| |||||  ||||||||    
T  2449 acacgcgaacttacagggaccttttacata 2420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 362
Target Start/End: Original strand, 6740 - 6880
Alignment:
Q  222 ttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnntatacagcgacaaaaaccaaaaaca 321  Q
    ||||||| ||||||||||| ||||  ||||| ||||| |||  |||| ||| |||| | |||||||||        ||||||  ||||||||||||||||    
T  6740 ttgtaacggaagttgacgggagggtagaaaatcaaaaagttattaacatacaggggatattttagaacaaaaaaagatacaggaacaaaaaccaaaaaca 6839  T
Q  322 cgcgaacttacggggacgatttacatatttaagcctcaaaa 362  Q
    ||| || |||| | |||||||||||||||||||||| ||||    
T  6840 cgccaaattacagagacgatttacatatttaagcctaaaaa 6880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 357
Target Start/End: Complemental strand, 12270 - 12130
Alignment:
Q  218 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaacnnnnnnnt-atacagcgacaaaaaccaa 316  Q
    |||||||| ||||||||| |||  |||||| |||||||||| ||| | ||||||| ||| |||||||||||          |||||| ||| ||||||||    
T  12270 gtttttgtcacagaagttaacgttagggactaaaaccaaaaggttaacaacttacagggtttgttttagaaagaaaaaaagatacagggacgaaaaccaa 12171  T
Q  317 aaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    |||||||||||||||| || ||  |||||||||||||||||    
T  12170 aaacacgcgaacttaccggaaccttttacatatttaagcct 12130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 475 - 521
Alignment:
Q  243 gggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 289  Q
    ||||| |||||||||||||||||||||||| |||  |||||||||||    
T  475 gggaccaaaaccaaaacgtttataacttacagggtctgttttagaac 521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 4259 - 4317
Alignment:
Q  299 tacagcgacaaaaaccaaaaacacgcgaacttacggggacgatttacatatttaagcct 357  Q
    ||||| ||| |||||||||||  ||||||||||| |||||  |||||||||||||||||    
T  4259 tacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcct 4317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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