View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_high_11 (Length: 589)
Name: NF11856_high_11
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 283 - 576
Target Start/End: Complemental strand, 12451971 - 12451678
Alignment:
| Q |
283 |
gttggctaagctttcatagggattggtatggtagttactccatgt-tagcttatgtatccaagtgcactcgatgcatctaccggcattcaatcaactctt |
381 |
Q |
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| T |
12451971 |
gttggctaagctttcatagggattggtatggtagttgctgcatgtatggcttatgtatccaaatgcacttaatgcatctaccggcattcagtcgactctt |
12451872 |
T |
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| Q |
382 |
gcattacacattaatcagaatttccttgctttgccccattcaaaatttgtatggtatcaggcgctaatgcggagccttggttgccattcaatttattttg |
481 |
Q |
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| T |
12451871 |
gcattacacg--aatcagaatttccttgctttgtgcaattcaaaatttgtatggtatcaggcgctaatgcggagccttggttgtcattcaatttcttttt |
12451774 |
T |
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| Q |
482 |
-aacattcttcatctccaacctctaaagaattggttactagtcacaaacccatctaatccgttttacctccatcaaggtgagaataatcatttatc |
576 |
Q |
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| T |
12451773 |
taacattcttcatctccaacctctaaacaattggttactagtcacaaacccatctactccgttttacctccatcatggtgagaataatcatttatc |
12451678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 283 - 552
Target Start/End: Complemental strand, 12449708 - 12449437
Alignment:
| Q |
283 |
gttggctaagctttcatagggattggtatggtagttactccatgt-tagcttatgtatccaagtgcactcgatgcatctaccggcattcaatcaactctt |
381 |
Q |
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| T |
12449708 |
gttggctcagctttcatagggattgttatggtagttgctgcatgtatagcttatgtatccaaatgcacttgatgcatctacaggaattcagtccactctt |
12449609 |
T |
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| Q |
382 |
gcattacacattaatcagaatttccttgctttgccccattcaaaatttgtatggtatcaggcgctaatgcggagccttggttgccattcaattt-atttt |
480 |
Q |
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| T |
12449608 |
gcattacacataaatcagaatttcctcgctttgcgcaatttaaaatttgtatggtatcaggcgctaatgcgaagccttggttgtcattcaatttcttttt |
12449509 |
T |
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| Q |
481 |
gaacattcttcatctccaacctctaaagaattggttactagtcacaaacccatctaatccgttttacctcca |
552 |
Q |
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| T |
12449508 |
taacattcttcatctccaacctctaaagaatttgttactagtcacaaacccatctaatccgttttacctcca |
12449437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 12452318 - 12452146
Alignment:
| Q |
16 |
gaaactcctgcagaccgtttccagaccatcgtatatttgnnnnnnngcaaattggatgtgaatgaacgataggtttgaccagttacatggaccaatttgc |
115 |
Q |
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| T |
12452318 |
gaaactcctgcagactgtttccagactatcttgtatttgtttttttgcaaattggatgtgaatgaacgataggtttgaccagttacatggaccaatttgc |
12452219 |
T |
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| Q |
116 |
tatttaattttcttttcttttgtaagataaactggatttcctaggtgttaaaattatatatttctcctattttctttgc |
194 |
Q |
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| T |
12452218 |
tatttaattttc-----ttttgtaagataaactggatttcctaggtgtt-agattatatatttctcctattttctttgc |
12452146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 62 - 197
Target Start/End: Complemental strand, 12450009 - 12449880
Alignment:
| Q |
62 |
gcaaattggatgtgaatgaacgataggtttgaccagttacatggaccaatttgctatttaattttcttttcttttgtaagataaactggatttcctaggt |
161 |
Q |
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| T |
12450009 |
gcaaattggatgtgaatgaacgataggtttgaccagttacctgcaccagtttgctatttaa-----ttatcttttgcaagataaactggttttcctaggt |
12449915 |
T |
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| Q |
162 |
gttaaaattatatatttctcctattttctttgccgg |
197 |
Q |
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| T |
12449914 |
gtt-agattatatatttctcctattttcttcgccgg |
12449880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 12452056 - 12451999
Alignment:
| Q |
210 |
ataatagtttaaccaagggaaatgccagcgagtaacccctggggcactcgttagcaag |
267 |
Q |
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| T |
12452056 |
ataatagtttaaccaagggaaatgctagcgagtaccccatgaggcactcattagcaag |
12451999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 12452141 - 12452095
Alignment:
| Q |
221 |
accaagggaaatgccagcgagtaacccctggggcactcgttagcaag |
267 |
Q |
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| T |
12452141 |
accaagggaaatgctagcgagtaccccatggggcgctcgttagcaag |
12452095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 12449793 - 12449736
Alignment:
| Q |
210 |
ataatagtttaaccaagggaaatgccagcgagtaacccctggggcactcgttagcaag |
267 |
Q |
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| T |
12449793 |
ataatagtttgactaagggaaatgctagtgagtaccccatggggcactcattagcaag |
12449736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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