View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_high_14 (Length: 544)
Name: NF11856_high_14
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 340
Target Start/End: Original strand, 10320171 - 10320512
Alignment:
| Q |
15 |
atcaggttcatcacatgcatctagctctcagggccctcgga---------------accctcaaacccttgagggcgagagttctcgggctcagagcaat |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10320171 |
atcaggttcatcacatgcatctagctctcagggccctcggactcctctggctctgaaccctcaaacccttgagggcgagagttctcgggctcagagcaat |
10320270 |
T |
|
| Q |
100 |
cggtagaatctcaaacagtggtttttcctcagttttacgtatcatgaaattttaataagtgttctggagtttgtgacacaaaggattatgtctgatatgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10320271 |
cggtagaatctcaaacagtggtttttcctcagttttacgtatcatgaaattttaataagtgttctggagtttgtgacacaaaggattatgtctgatatgt |
10320370 |
T |
|
| Q |
200 |
agcaaacaaacttgtatggttctgctttgttttggaaatgaaagttcaaaagtattctgaaatgatgtatagtgtttttacattactgtaaatt-aattt |
298 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| |
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| T |
10320371 |
agcaaaaaaacttgtatggttctgctttgttttggaaatgaaagttcaaaagtattctgaaatgttgcatagtgtttttacattactgtaaattaaattt |
10320470 |
T |
|
| Q |
299 |
catggtttcgttcactcttaattaatttgattcaacatttga |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
10320471 |
catggtttcgttcactcttaattaatttgattcaacatttga |
10320512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 15 - 340
Target Start/End: Original strand, 10299739 - 10300080
Alignment:
| Q |
15 |
atcaggttcatcacatgcatctagctctcagggccctcgga---------------accctcaaacccttgagggcgagagttctcgggctcagagcaat |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10299739 |
atcaggttcatcacatgcatctagctctcagggccctcggactcctctggctctgaaccctcaaacccttgagggcgagagttctcgggctcagagcaat |
10299838 |
T |
|
| Q |
100 |
cggtagaatctcaaacagtggtttttcctcagttttacgtatcatgaaattttaataagtgttctggagtttgtgacacaaaggattatgtctgatatgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10299839 |
cggtagaatctcaaacagtggtttttcctcagttttacgtatcatgaaattttaataagtgttctggagtttgtgacacaaaggattatgtctgatatgt |
10299938 |
T |
|
| Q |
200 |
agcaaacaaacttgtatggttctgctttgttttggaaatgaaagttcaaaagtattctgaaatgatgtatagtgtttttacattactgtaaatt-aattt |
298 |
Q |
| |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||| ||||| |
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| T |
10299939 |
agcaaaaaagcttgtatggttctgctttgttttggaaatgaaagttcaaaagtattctgaaatgttgcatagtgtttttacattactctaaattaaattt |
10300038 |
T |
|
| Q |
299 |
catggtttcgttcactcttaattaatttgattcaacatttga |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
10300039 |
catggtttcgttcactcttaattaatttgattcaacatttga |
10300080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 54 - 340
Target Start/End: Original strand, 10337341 - 10337628
Alignment:
| Q |
54 |
gaaccctcaaacccttgagggcgagagttctcgggctcagagcaatcggtagaatctcaaacagtggtttttcctcagttttacgtatcatgaaatttta |
153 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10337341 |
gaaccctcaaacccttgagggcgagagttctcgggctcagagcaatcggtagaatctcaaacagtggtttttcctcagttttacgtatcatgaaatttta |
10337440 |
T |
|
| Q |
154 |
ataagtgttctggagtttgtgacacaaaggattatgtctgatatgtagcaaacaaacttgtatggttctgctttgttttggaaatgaaagttcaaaagta |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10337441 |
ataagtgttctggagtttgtgacacaaaggattatgtctgatatgtagcaaaaaaacttgtatggttctgctttgttttggaaatgaaagttcaaaagta |
10337540 |
T |
|
| Q |
254 |
ttctgaaatgatgtatagtgtttttacattactgtaaatt-aatttcatggtttcgttcactcttaattaatttgattcaacatttga |
340 |
Q |
| |
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|||||||||| || ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10337541 |
ttctgaaatgttgcatagtgtttttacattactctaaattaaatttcatggtttcgttcactcttaattaatttgattcaacatttga |
10337628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 399 - 530
Target Start/End: Original strand, 10300083 - 10300214
Alignment:
| Q |
399 |
ctacatggtaataagaatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattc |
498 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10300083 |
ctacatggtaataaggatattcttaaatagcaagaagagattgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattc |
10300182 |
T |
|
| Q |
499 |
atgtataaatatttacagcataaactatgatt |
530 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |
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| T |
10300183 |
atgtataaatatttacagcatagactatgatt |
10300214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 399 - 530
Target Start/End: Original strand, 10337631 - 10337762
Alignment:
| Q |
399 |
ctacatggtaataagaatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattc |
498 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10337631 |
ctacatggtaataaggatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattccttctttctcaaattc |
10337730 |
T |
|
| Q |
499 |
atgtataaatatttacagcataaactatgatt |
530 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
10337731 |
atgtataaatatttacagcataaactatgatt |
10337762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 399 - 530
Target Start/End: Original strand, 10320515 - 10320650
Alignment:
| Q |
399 |
ctacatggtaataagaatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattc |
498 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10320515 |
ctacatggtaataaggatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctacctagcattcctcttttctcaaattc |
10320614 |
T |
|
| Q |
499 |
atgtataa----atatttacagcataaactatgatt |
530 |
Q |
| |
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|||||||| |||| ||||||||||||||||||| |
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| T |
10320615 |
atgtataaatatatatatacagcataaactatgatt |
10320650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 10337287 - 10337327
Alignment:
| Q |
15 |
atcaggttcatcacatgcatctagctctcagggccctcgga |
55 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||| |
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| T |
10337287 |
atcaggttcatcacatgcatctagctctcaaggccctcgga |
10337327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 35634839 - 35634769
Alignment:
| Q |
216 |
tggttctgctttgttttggaaatgaaagttcaaaagtattctgaaatgatgtatagtgtttttacattact |
286 |
Q |
| |
|
||||| ||| ||||||||||||||||||| |||||||||||||||||| |||||| |||||||| |||||| |
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|
| T |
35634839 |
tggttgtgccttgttttggaaatgaaagtgcaaaagtattctgaaatgctgtatactgtttttaaattact |
35634769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 284
Target Start/End: Complemental strand, 35631982 - 35631897
Alignment:
| Q |
199 |
tagcaaacaaacttgtatggttctgctttgttttggaaatgaaagttcaaaagtattctgaaatgatgtatagtgtttttacatta |
284 |
Q |
| |
|
||||||| ||| |||| || |||||| |||||| |||||| ||||||||| ||||| ||||||| | |||| | ||||||||||| |
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| T |
35631982 |
tagcaaataaaattgtgtgcttctgccttgtttgtgaaatggaagttcaaatgtattttgaaatgctttatactatttttacatta |
35631897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 35635265 - 35635190
Alignment:
| Q |
153 |
aataagtgttctggagtttgtgacacaa-aggattatgtctga---tatgtagcaaacaaacttgtatggttctgc |
224 |
Q |
| |
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||||||||| |||||||||||||||||| || |||||||||| ||| ||||||| |||||||| ||||||||| |
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| T |
35635265 |
aataagtgtcctggagtttgtgacacaagagttttatgtctgaaactatatagcaaataaacttgtttggttctgc |
35635190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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