View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_high_21 (Length: 474)
Name: NF11856_high_21
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_high_21 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 14 - 474
Target Start/End: Complemental strand, 1553813 - 1553353
Alignment:
| Q |
14 |
caaaggagaatggagcaattgcattggggtcagctccagcctcaaaccatggaactccactccatgcttgaccaacaaagatgcctagaactgcagccat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1553813 |
caaaggagaatggagcaattgcattggggtcagctccagcctcaaaccatggaactccactccatgcttgaccaacaaagatgcctagaactgcagccat |
1553714 |
T |
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| Q |
114 |
tgcccaccttccatgaataagctcagcttctctgtaccatttcagaaatgctgggtccttgccaaggcctagtggatcaaaaccaaagtcacctggtagt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1553713 |
tgcccaccttccatgaataagctcagcttctctgtaccatttcagaaatgctgggtccttgccaaggcctagtgggtcaaaaccaaagtcacctggtagt |
1553614 |
T |
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| Q |
214 |
ctacaattgaaaaacattaaacaagtcataattcagaaagaaactaagcgtgcgttttattctgccgcaataacaagtgaaaactgagttgaatataaag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1553613 |
ctacaattgaaaaacattaaacaagtcataattcagaaagaaactaagcgtgggttttattctgccgcaataacaagtgaaaactgagttgaatataaag |
1553514 |
T |
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| Q |
314 |
tgatttatgtttataagtaaacatgaacatggattgaacaataagctatgaattgcgaagttataattaattctagaggaaagtggacttacgatccatc |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1553513 |
tgatttatgtttataagtaaacatgaacatggattgaacaataagctatgaattgcgaagttataattaattctagaggtaagtggacttacgatccatc |
1553414 |
T |
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| Q |
414 |
gagccattctgggtcgacgaggtttccaccaaatctaacaccagggatccatgacttcttt |
474 |
Q |
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| T |
1553413 |
gagccattctgggtcgacgaggtttccaccaaatctaacaccagggatccatgacttcttt |
1553353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 12110956 - 12110924
Alignment:
| Q |
293 |
aaaactgagttgaatataaagtgatttatgttt |
325 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
12110956 |
aaaagtgagttgaatataaagtgatttatgttt |
12110924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 15285 - 15317
Alignment:
| Q |
293 |
aaaactgagttgaatataaagtgatttatgttt |
325 |
Q |
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| T |
15285 |
aaaagtgagttgaatataaagtgatttatgttt |
15317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 38510378 - 38510410
Alignment:
| Q |
293 |
aaaactgagttgaatataaagtgatttatgttt |
325 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
38510378 |
aaaagtgagttgaatataaagtgatttatgttt |
38510410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 48045708 - 48045740
Alignment:
| Q |
293 |
aaaactgagttgaatataaagtgatttatgttt |
325 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
48045708 |
aaaactgagttgaagataaagtgatttatgttt |
48045740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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