View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_high_28 (Length: 420)
Name: NF11856_high_28
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_high_28 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 33161683 - 33161281
Alignment:
| Q |
18 |
ggtatagtattatattgtgtgctaagcactaactggaggtagatcatgatgagttttgacttataatgtgttttatagaaagtcgacagtttgaccaaga |
117 |
Q |
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| T |
33161683 |
ggtatagtattatattgtgtgctaagcactaagtggaggtagatcatgatgagttttgacttataatgtgttttatagaaagtcaacagtttgaccaaga |
33161584 |
T |
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| Q |
118 |
ttttccacttgttatgctctttcgtttcggtcttgaggtgatggtggaagttttataagccttgaagaatattgggaagtgtttgttatgcaataagaat |
217 |
Q |
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| T |
33161583 |
ttttccacttgttatgctctttcgtttcggtcttgaggtgatggtggaagttttataagccttgaagaatattgggaagtgtttgttatgcaataagaat |
33161484 |
T |
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| Q |
218 |
tagcattttattatattgtttgtaggattgcaaattgcatacacaatacatgcattacagatccctagttccttgtggattgacaaaggtgaggaaaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33161483 |
tagcattttattatattgtttgtaggattggaaattgcatacacaagacatgcattacagatccctagttccttgtggattgacaaaggagaggaaaaaa |
33161384 |
T |
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| Q |
318 |
cccgcttaagatccggcaataactcacatgaacatgcataatgcatatgaattatgatcattgacttctatatgcaagttgcaagaagttaaatcactat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
33161383 |
cccgcttaagatccggcaataactcacatgaacatgcataatgcatatgaattatgatcattgacttctatatgcaagttgcaagaagttaaataaatat |
33161284 |
T |
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| Q |
418 |
ctt |
420 |
Q |
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| T |
33161283 |
ctt |
33161281 |
T |
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