View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11856_high_38 (Length: 363)

Name: NF11856_high_38
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11856_high_38
NF11856_high_38
[»] chr7 (9 HSPs)
chr7 (12-363)||(44551921-44552272)
chr7 (135-255)||(5127-5247)
chr7 (212-260)||(5060846-5060894)
chr7 (224-259)||(38790883-38790918)
chr7 (137-254)||(38386178-38386295)
chr7 (212-260)||(20379700-20379748)
chr7 (212-260)||(42548159-42548207)
chr7 (135-189)||(38047715-38047769)
chr7 (213-258)||(33839475-33839520)
[»] chr4 (14 HSPs)
chr4 (22-258)||(628088-628324)
chr4 (23-252)||(40923737-40923966)
chr4 (99-258)||(37577159-37577318)
chr4 (120-260)||(37030907-37031047)
chr4 (68-142)||(628255-628329)
chr4 (135-255)||(24974101-24974221)
chr4 (22-91)||(40923787-40923856)
chr4 (74-258)||(51719668-51719852)
chr4 (135-189)||(12586753-12586807)
chr4 (213-258)||(34235737-34235782)
chr4 (135-258)||(55527868-55527991)
chr4 (211-241)||(53265809-53265839)
chr4 (213-258)||(33164538-33164583)
chr4 (213-258)||(54208180-54208225)
[»] chr8 (11 HSPs)
chr8 (15-260)||(9387765-9388010)
chr8 (76-258)||(9418587-9418769)
chr8 (19-91)||(9418703-9418775)
chr8 (135-259)||(5967192-5967316)
chr8 (212-258)||(33220819-33220865)
chr8 (213-258)||(31762241-31762286)
chr8 (213-258)||(33220024-33220068)
chr8 (224-259)||(23559027-23559062)
chr8 (135-258)||(34279516-34279639)
chr8 (213-258)||(43641006-43641051)
chr8 (212-252)||(9448729-9448769)
[»] chr2 (12 HSPs)
chr2 (21-254)||(25678729-25678962)
chr2 (22-258)||(24929175-24929411)
chr2 (73-258)||(943137-943321)
chr2 (13-91)||(943128-943206)
chr2 (67-142)||(24929169-24929244)
chr2 (212-258)||(37893040-37893086)
chr2 (213-258)||(8273245-8273290)
chr2 (212-260)||(20685004-20685052)
chr2 (213-260)||(38225727-38225774)
chr2 (212-258)||(20686834-20686880)
chr2 (212-257)||(12969296-12969340)
chr2 (212-260)||(12967268-12967316)
[»] scaffold0246 (2 HSPs)
scaffold0246 (48-260)||(2721-2933)
scaffold0246 (22-91)||(2746-2815)
[»] chr3 (26 HSPs)
chr3 (73-259)||(44430417-44430603)
chr3 (73-186)||(13840617-13840730)
chr3 (78-258)||(3860246-3860445)
chr3 (126-241)||(50664131-50664246)
chr3 (73-258)||(39685212-39685378)
chr3 (73-259)||(53814454-53814640)
chr3 (18-91)||(13840613-13840686)
chr3 (18-91)||(39685309-39685382)
chr3 (21-90)||(44430535-44430604)
chr3 (182-257)||(13843595-13843670)
chr3 (27-91)||(3860381-3860445)
chr3 (213-261)||(15040678-15040726)
chr3 (212-259)||(4969874-4969921)
chr3 (126-260)||(21566895-21567029)
chr3 (213-260)||(44836511-44836558)
chr3 (212-258)||(6162714-6162760)
chr3 (135-189)||(7665802-7665856)
chr3 (213-263)||(16931441-16931491)
chr3 (213-258)||(40517556-40517601)
chr3 (213-260)||(26998320-26998367)
chr3 (12-54)||(3860437-3860479)
chr3 (213-258)||(35069479-35069524)
chr3 (213-258)||(35485243-35485288)
chr3 (212-260)||(2325593-2325641)
chr3 (212-260)||(11343830-11343878)
chr3 (212-260)||(19866731-19866779)
[»] scaffold0041 (2 HSPs)
scaffold0041 (73-258)||(23487-23672)
scaffold0041 (12-89)||(23605-23682)
[»] chr1 (16 HSPs)
chr1 (73-258)||(49030232-49030418)
chr1 (12-91)||(49030349-49030428)
chr1 (98-258)||(28446449-28446608)
chr1 (212-258)||(11821160-11821206)
chr1 (213-258)||(39650196-39650241)
chr1 (135-259)||(33401407-33401531)
chr1 (135-259)||(33617643-33617767)
chr1 (213-259)||(49033763-49033809)
chr1 (213-258)||(5119064-5119109)
chr1 (224-260)||(3792498-3792534)
chr1 (212-260)||(45688306-45688354)
chr1 (212-258)||(3792560-3792606)
chr1 (213-259)||(28476015-28476061)
chr1 (212-258)||(45691080-45691126)
chr1 (212-258)||(45691222-45691268)
chr1 (212-258)||(45691364-45691410)
[»] chr6 (8 HSPs)
chr6 (12-131)||(25403890-25404009)
chr6 (73-230)||(25403900-25404057)
chr6 (95-260)||(17436456-17436621)
chr6 (126-258)||(24326944-24327076)
chr6 (213-258)||(807202-807247)
chr6 (213-258)||(31522568-31522613)
chr6 (213-258)||(32275804-32275849)
chr6 (213-259)||(14153353-14153399)
[»] chr5 (6 HSPs)
chr5 (126-258)||(36933168-36933300)
chr5 (135-259)||(28677885-28678009)
chr5 (74-252)||(6705929-6706107)
chr5 (213-257)||(4845302-4845346)
chr5 (213-260)||(1145139-1145186)
chr5 (213-258)||(34016002-34016047)
[»] scaffold1763 (1 HSPs)
scaffold1763 (212-262)||(396-446)
[»] scaffold1063 (1 HSPs)
scaffold1063 (212-258)||(1475-1521)


Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 363
Target Start/End: Complemental strand, 44552272 - 44551921
Alignment:
Q  12 cagagacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgc 111  Q
    |||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44552272 cagagacagaactagcatgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagttaagtaacgtgacttaagttgc 44552173  T
Q  112 gtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||     
T  44552172 gtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaaggataaaaaggtc 44552073  T
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctttgtcttgaacctatttgctggatcttcttgttctaagaataaaacaaccaa 311  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44552072 ttttattttaagaatgagcgaaaccatttggataatgagcagaattctttgtcttgaacctatttgctggatcttcttgttttaagaataaaacaaccaa 44551973  T
Q  312 ttatgtatgatgacgaaatatgagattaatatgtgtgtccaaagatatttat 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44551972 ttatgtatgatgacgaaatatgagattaatatgtgtgtccaaagatatttat 44551921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 255
Target Start/End: Original strand, 5127 - 5247
Alignment:
Q  135 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 234  Q
    |||||||||||| | | |||||||| |||||  ||||||||||||||||||||||  |||||| |||      |||  |||||||| ||||||||||||     
T  5127 ttaagtcacgctgcttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaat 5226  T
Q  235 ccatttggataatgagcagaa 255  Q
    |||||||| ||||||||||||    
T  5227 ccatttgggtaatgagcagaa 5247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 5060894 - 5060846
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 260  Q
    ||||||||| |||||||||| |||||||||||||||||| |||||||||    
T  5060894 ttttactttgggaatgagcggaaccatttggataatgagtagaattctt 5060846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 38790918 - 38790883
Alignment:
Q  224 aatgagcgaaaccatttggataatgagcagaattct 259  Q
    ||||||||||||||||||||||||||||||||||||    
T  38790918 aatgagcgaaaccatttggataatgagcagaattct 38790883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 254
Target Start/End: Complemental strand, 38386295 - 38386178
Alignment:
Q  137 aagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaacc 236  Q
    |||||||||||| | |||||||| |||||  ||||||||||||||||||||||  |||||| |||        |  |||||||| | |||||||||| ||    
T  38386295 aagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcaatcatttactttggaaatgagcgaatcc 38386196  T
Q  237 atttggataatgagcaga 254  Q
    ||||||||||||||||||    
T  38386195 atttggataatgagcaga 38386178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 20379700 - 20379748
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 260  Q
    ||||||||| |||||||||| |||||||| ||||||||||| |||||||    
T  20379700 ttttactttgggaatgagcggaaccatttagataatgagcataattctt 20379748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 42548207 - 42548159
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 260  Q
    ||||||||| ||||||||| |||| |||||| |||||||||||||||||    
T  42548207 ttttactttgggaatgagcaaaacgatttgggtaatgagcagaattctt 42548159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 38047769 - 38047715
Alignment:
Q  135 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaa 189  Q
    |||||||||||||| | |||||||| |||||  |||||| |||||||||||||||    
T  38047769 ttaagtcacgctacttatcttaagttacgttataatttgtactagcgcatgttaa 38047715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 33839475 - 33839520
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||  ||||||||||| |||||||||||| |||||||||||    
T  33839475 tttactttgagaatgagcgaatccatttggataaagagcagaattc 33839520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 628324 - 628088
Alignment:
Q  22 actagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatatt 121  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  628324 actagtgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgtgtttcatatt 628225  T
Q  122 gcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttacttta 221  Q
    ||| |||||| ||||||||||| |||||||||||||||||| || ||||||| |||||||||||||||||||||||||||| |||| || ||||||||||    
T  628224 gcactagcgttacttaagtcactctacctgtcttaagtcacattccaatttgaactagcgcatgttaagttgcgtaagggtaaaaaagtcttttacttta 628125  T
Q  222 ggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||||||||||||||| |||||||||||||||    
T  628124 ggaatgagcgaaaccatttgggtaatgagcagaattc 628088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 23 - 252
Target Start/End: Original strand, 40923737 - 40923966
Alignment:
Q  23 ctagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattg 122  Q
    ||||||||||||||||||||||| ||||||||  ||||||| |||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  40923737 ctagcgtgacttaagtcaagcaacgtgacttaaattgcgttaaattttgcactagcgtgatttaagtcaagtaacgtgacttaagttgtatttcatattg 40923836  T
Q  123 cattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttag 222  Q
    || ||||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||||||| |||||| | ||||||| |||||||||||    
T  40923837 cactagcgtgacttaagtcacgctacctgtcttaagtcacattccaatttacattagcgcatgttaagttgtgtaaggataaaaaggtcttttactttag 40923936  T
Q  223 gaatgagcgaaaccatttggataatgagca 252  Q
    |||||||||||||||||||| |||||||||    
T  40923937 gaatgagcgaaaccatttgggtaatgagca 40923966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 99 - 258
Target Start/End: Original strand, 37577159 - 37577318
Alignment:
Q  99 tgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaa 198  Q
    |||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||| ||||||  || ||| |||||||||| ||||||||||||||    
T  37577159 tgacttaagttgcgtttcattttgcattagtatgacttaagtcatgctacctgtcttaaatcacgtaccattttacactagcgcaagttaagttgcgtaa 37577258  T
Q  199 gggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||| ||||| | |||||||||||||||||||||||  ||||||||||||||||||||||    
T  37577259 gggtaaaaagatcttttactttaggaatgagcgaaattatttggataatgagcagaattc 37577318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 120 - 260
Target Start/End: Complemental strand, 37031047 - 37030907
Alignment:
Q  120 ttgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactt 219  Q
    ||||| |||||||||||||||||||||| || |||||||||||||| ||||||||| | |||||| |||| ||| |||||||| ||||||| ||||||||    
T  37031047 ttgcactagcgtgacttaagtcacgctatctatcttaagtcacgttccaatttgcatttgcgcatattaaattgtgtaagggtaaaaaggtcttttactt 37030948  T
Q  220 taggaatgagcgaaaccatttggataatgagcagaattctt 260  Q
    | ||||||||| ||| ||||||| |||||| || |||||||    
T  37030947 tgggaatgagcaaaatcatttgggtaatgaccataattctt 37030907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 628329 - 628255
Alignment:
Q  68 tttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtca 142  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||    
T  628329 tttgcactagtgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtca 628255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 255
Target Start/End: Original strand, 24974101 - 24974221
Alignment:
Q  135 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 234  Q
    |||||||||||||| | |||||||| || ||  ||||||||||||||||||||||  |||||| |||      |||  |||||||| ||||||||| ||     
T  24974101 ttaagtcacgctacttatcttaagttacattataatttgcactagcgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcaaat 24974200  T
Q  235 ccatttggataatgagcagaa 255  Q
    |||||||||||||||||||||    
T  24974201 ccatttggataatgagcagaa 24974221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 40923787 - 40923856
Alignment:
Q  22 actagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 91  Q
    |||||||||| |||||||||| || |||||||| ||||  ||| || |||||||||||||||||||||||    
T  40923787 actagcgtgatttaagtcaagtaacgtgacttaagttgtatttcatattgcactagcgtgacttaagtca 40923856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 258
Target Start/End: Original strand, 51719668 - 51719852
Alignment:
Q  74 ctagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttg 173  Q
    ||||||||  |||||||| | |||||||||||||||||||| ||| ||| | || ||||| ||||||||||| || | | ||| || |||||  |||||     
T  51719668 ctagcgtggtttaagtcacgcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtcacgcaacatatgttacgttacgttgtaattta 51719767  T
Q  174 cactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    || || |||||||||| || |||| ||||     |||  |||||||| | ||| |||||| |||||||| |||| ||||||||||    
T  51719768 cattaacgcatgttaacttacgtaggggtatttcggttatttactttggaaataagcgaatccatttgggtaataagcagaattc 51719852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 12586753 - 12586807
Alignment:
Q  135 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaa 189  Q
    |||||||||||||| | |||||||| |||||  ||||||||||||||||||||||    
T  12586753 ttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaa 12586807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 34235737 - 34235782
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||||    
T  34235737 tttactttaggaatgagcggaaccatttgggtaatgagcataattc 34235782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 258
Target Start/End: Original strand, 55527868 - 55527991
Alignment:
Q  135 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 234  Q
    |||||||||||||| | |||||||| |||||  ||||||||||||||| ||||||  |||||| |||      |||  ||| |||| | ||||||||||     
T  55527868 ttaagtcacgctacttatcttaagttacgttataatttgcactagcgcgtgttaacatgcgtaggggcatttcggtcatttgctttggaaatgagcgaat 55527967  T
Q  235 ccatttggataatgagcagaattc 258  Q
    ||||||  ||||||||||||||||    
T  55527968 ccatttaaataatgagcagaattc 55527991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 53265839 - 53265809
Alignment:
Q  211 attttactttaggaatgagcgaaaccatttg 241  Q
    |||||||||||||||||||||||||||||||    
T  53265839 attttactttaggaatgagcgaaaccatttg 53265809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 33164538 - 33164583
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||  ||||||||| |||||||||| |||||||||||||||    
T  33164538 tttactttgagaatgagcggaaccatttgggtaatgagcagaattc 33164583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 54208225 - 54208180
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||||||| ||||||||| ||||||||||||||| ||||| |||||    
T  54208225 tttactttgggaatgagcaaaaccatttggataaagagcataattc 54208180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 6e-96; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 9387765 - 9388010
Alignment:
Q  15 agacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtt 114  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9387765 agacagaactagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcatt 9387864  T
Q  115 tcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattt 214  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||| ||||||| ||||||| |||    
T  9387865 tcatattgcactagcgtgacttaagtcatgctacctgtcttaagtcacgttccaatttgcactaacgcatgttaaattgcataagggtaaaaaggtcttt 9387964  T
Q  215 tactttaggaatgagcgaaaccatttggataatgagcagaattctt 260  Q
    || ||| ||||||||| ||||||||| | ||||||| |||||||||    
T  9387965 tattttgggaatgagcaaaaccatttaggtaatgagtagaattctt 9388010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 76 - 258
Target Start/End: Complemental strand, 9418769 - 9418587
Alignment:
Q  76 agcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgca 175  Q
    |||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9418769 agcgtgacttaagtcaagtaacatgacttaagttgcgtgtcattttgcactagcgtgacttaagtcacgctacctgtcttaagtcacgttccaatttgca 9418670  T
Q  176 ctagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    || |||||||||||||||||||||||| ||| ||| ||||||||| ||||||||||||||||||||| |||||||||||||||    
T  9418669 cttgcgcatgttaagttgcgtaagggtaaaatggtcttttactttgggaatgagcgaaaccatttgggtaatgagcagaattc 9418587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 9418775 - 9418703
Alignment:
Q  19 agaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 91  Q
    ||||| |||||||||||||||||| ||  ||||||| ||||||| | ||||||||||||||||||||||||||    
T  9418775 agaaccagcgtgacttaagtcaagtaacatgacttaagttgcgtgtcattttgcactagcgtgacttaagtca 9418703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 5967192 - 5967316
Alignment:
Q  135 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 234  Q
    ||||||||| |||| | |||||||| |||||  ||||||||||||||||||||||  |||||| |||      | |  |||||||| ||||||||||||     
T  5967192 ttaagtcacactacttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaat 5967291  T
Q  235 ccatttggataatgagcagaattct 259  Q
    |||||||| ||||||||||||||||    
T  5967292 ccatttgggtaatgagcagaattct 5967316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 33220819 - 33220865
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||| |||||||| |||||||||||| |||||||||||||||    
T  33220819 ttttactttgggaatgagtgaaaccatttgggtaatgagcagaattc 33220865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 31762286 - 31762241
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||||||| |||||||||||| ||||||| ||||||||||||||||    
T  31762286 tttactttgggaatgagcgaatccatttgaataatgagcagaattc 31762241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 33220068 - 33220024
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||    
T  33220068 tttacttt-ggaatgagcggaaccatttggataatgagcagaattc 33220024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 23559027 - 23559062
Alignment:
Q  224 aatgagcgaaaccatttggataatgagcagaattct 259  Q
    |||||||| |||||||||||||||||||||||||||    
T  23559027 aatgagcggaaccatttggataatgagcagaattct 23559062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 258
Target Start/End: Original strand, 34279516 - 34279639
Alignment:
Q  135 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 234  Q
    |||||||||||||| | |||||||| |||||  ||||||||||| ||||||||||  || ||| |||      | |  |||||||||||||||||||||     
T  34279516 ttaagtcacgctacttatcttaagttacgttataatttgcactaacgcatgttaacatgtgtaggggcatttcgatcatttactttaggaatgagcgaat 34279615  T
Q  235 ccatttggataatgagcagaattc 258  Q
    ||||||   |||||||||||||||    
T  34279616 ccatttaagtaatgagcagaattc 34279639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 43641006 - 43641051
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||||||| | ||||||| ||||||||||| |||||||||||||||    
T  43641006 tttactttggaaatgagccaaaccatttgggtaatgagcagaattc 43641051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 9448729 - 9448769
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagca 252  Q
    |||||||||  ||||||| ||||||||||||||||||||||    
T  9448729 ttttactttgagaatgagtgaaaccatttggataatgagca 9448769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 25678729 - 25678962
Alignment:
Q  21 aactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatat 120  Q
    ||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  25678729 aactagcgtgactcaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtaacttaagttgtgtttcatat 25678828  T
Q  121 tgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttacttt 220  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||||| ||||||| |||||||||    
T  25678829 tgcactagcgtgacttaagtcacgctacatgtcttaagtcacgttccaatttgcacaagcgcatgttaagttgtgtaagggtaaaaaggtcttttacttt 25678928  T
Q  221 aggaatgagcgaaaccatttggataatgagcaga 254  Q
     ||||| ||||||||||||| | |||||||||||    
T  25678929 gggaatcagcgaaaccattttggtaatgagcaga 25678962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 24929175 - 24929411
Alignment:
Q  22 actagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatatt 121  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24929175 actagtgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgtgtttcatatt 24929274  T
Q  122 gcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttacttta 221  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||||||| | ||||| | |||||||||     
T  24929275 gcactagagtgacttaagtcacgctacctgtcttaagtcacgtttcaatttacacaaacgtatgttaagttgcgtaaggataaaaagatcttttactttg 24929374  T
Q  222 ggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||| ||||||||||||| | |||||||||||||||    
T  24929375 ggaatcagcgaaaccattttggtaatgagcagaattc 24929411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 73 - 258
Target Start/End: Original strand, 943137 - 943321
Alignment:
Q  73 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  943137 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcactagcgtgacttaagtcacgctacctgtcttaagtcacgttccaattt 943236  T
Q  173 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||| ||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||| |||||||||| ||||||||    
T  943237 gcac-agcgcatgttaagttgcgtaagggtaaaaaagtcttttactttatgaatgagcgaaaccatctggataatgaacagaattc 943321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 943128 - 943206
Alignment:
Q  13 agagacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 91  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||||||| || |||||||||||||||||||||||    
T  943128 agagacagaactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcactagcgtgacttaagtca 943206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 24929169 - 24929244
Alignment:
Q  67 ttttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtca 142  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||    
T  24929169 ttttgtactagtgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtca 24929244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 37893040 - 37893086
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||||||    
T  37893040 ttttactttgggaatgagcgaaaccatttgggtaattagcagaattc 37893086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 8273290 - 8273245
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||||||| |||||||||||| |||||||| |||||||||||||||    
T  8273290 tttactttgggaatgagcgaatccatttgggtaatgagcagaattc 8273245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 20685052 - 20685004
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 260  Q
    |||||||||  ||||||||| |||||||||| |||||||||||||||||    
T  20685052 ttttactttgagaatgagcggaaccatttgggtaatgagcagaattctt 20685004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 38225774 - 38225727
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattctt 260  Q
    |||||||||||||||| |||||| ||||| ||||||||| ||||||||    
T  38225774 tttactttaggaatgaacgaaacaatttgaataatgagctgaattctt 38225727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 20686834 - 20686880
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||||||||||||||||||| || |||||| |||| |||||||||||    
T  20686834 ttttactttaggaatgagcggaaacatttgaataacgagcagaattc 20686880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 12969296 - 12969340
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaatt 257  Q
    ||||||||| |||||||||| |||||||| ||||||||||||||||    
T  12969296 ttttacttt-ggaatgagcggaaccatttagataatgagcagaatt 12969340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 12967316 - 12967268
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 260  Q
    |||||||||  ||||||||| |||||||| | |||||||||||||||||    
T  12967316 ttttactttgagaatgagcggaaccatttaggtaatgagcagaattctt 12967268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 48 - 260
Target Start/End: Original strand, 2721 - 2933
Alignment:
Q  48 tgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgcta 147  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  2721 tgacttaagttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtggcttaagttgcgtttcttattgcactagcgtgacttaagtcatgcta 2820  T
Q  148 cctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataat 247  Q
    ||||||||||||||  || |||||||||||||||||||||||||||| ||||||| ||||||| ||||| |||  |||||||||||||||||||| ||||    
T  2821 cctgtcttaagtcattttccaatttgcactagcgcatgttaagttgcataagggtaaaaaggtcttttattttgagaatgagcgaaaccatttgggtaat 2920  T
Q  248 gagcagaattctt 260  Q
    |||||||||||||    
T  2921 gagcagaattctt 2933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 2746 - 2815
Alignment:
Q  22 actagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 91  Q
    ||||||||||||||||||||| || ||| |||| |||||||||  | |||||||||||||||||||||||    
T  2746 actagcgtgacttaagtcaagtaacgtggcttaagttgcgtttcttattgcactagcgtgacttaagtca 2815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 73 - 259
Target Start/End: Complemental strand, 44430603 - 44430417
Alignment:
Q  73 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 172  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  44430603 actagcgtgacttaagtcaagtaacgtgacttaagttgcatttcattttgcactagcgtgacttaagtcgcgctacctgtcttaagtcacgttccaattt 44430504  T
Q  173 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattct 259  Q
    |||||||||||||||||||||||||||||| ||| | | ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  44430503 gcactagcgcatgttaagttgcgtaagggtaaaatgatcttttactttgggaatgagcaaaaccatttggataatgagcagaattct 44430417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 73 - 186
Target Start/End: Original strand, 13840617 - 13840730
Alignment:
Q  73 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 172  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||     
T  13840617 actagcgtgacttaagtcaagtaacgtgatttaagttacgtttcattttgcactagcgtgacttaagtcacgctacctgtcttaagtcacgttccaattg 13840716  T
Q  173 gcactagcgcatgt 186  Q
    |||||||| |||||    
T  13840717 gcactagcacatgt 13840730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 78 - 258
Target Start/End: Complemental strand, 3860445 - 3860246
Alignment:
Q  78 cgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacg-------------- 163  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||                  
T  3860445 cgtgacttaagtctagtaacgtgacttaagttacgtttcatattgcactagcgtgacttaagtcacgctacctgccttaagtcacgctacctgccttaag 3860346  T
Q  164 -----tttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
         ||||||||| ||||||||||| ||||||||||||||||| ||||  | ||||| |||  ||||||||||||||||||||||||||| ||||||||    
T  3860345 tcacgtttcaatttacactagcgcatattaagttgcgtaagggtaaaaatatcttttattttgagaatgagcgaaaccatttggataatgaacagaattc 3860246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 50664131 - 50664246
Alignment:
Q  126 tagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaa 225  Q
    |||| |||||||||| |||||||||||||||| ||||||  || |||||||||||||| |||||||||||||| ||| ||||||| ||||||||||| ||    
T  50664131 tagcatgacttaagttacgctacctgtcttaaatcacgtaccattttgcactagcgcaagttaagttgcgtaaaggtaaaaaggtcttttactttagaaa 50664230  T
Q  226 tgagcgaaaccatttg 241  Q
    ||||||||||||||||    
T  50664231 tgagcgaaaccatttg 50664246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 73 - 258
Target Start/End: Complemental strand, 39685378 - 39685212
Alignment:
Q  73 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 172  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||||                   |||||| ||||||    
T  39685378 actagcgtgacttaagtcaagtaacgtgacttaagtttcgtttcattttgcaccagcgtgacttaagt-------------------cacgttccaattt 39685298  T
Q  173 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||||||||| ||||||||||||||||||| ||| ||| |||||||||   ||||||||||||||||||| ||||||||| |||||    
T  39685297 gcactagcgcgtgttaagttgcgtaagggtaaaatggtcttttactttgaaaatgagcgaaaccatttgggtaatgagcaaaattc 39685212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 259
Target Start/End: Original strand, 53814454 - 53814640
Alignment:
Q  73 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 172  Q
    |||||||||  |||||||| |||||||||||||||||||||| ||| ||| |  || |||| ||||||||||  || | | |||||| |||||| |||||    
T  53814454 actagcgtggtttaagtcacgtaacgtgacttaagttgcgttccattttgtaccagtgtgagttaagtcacgtaacgtatgttaagttacgttttaattt 53814553  T
Q  173 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattct 259  Q
    |||||||||||| ||||  |||||| |||      | |  |||||||| |||||||||||| |||||||| ||||||||||||||||    
T  53814554 gcactagcgcatattaacatgcgtaggggcattttgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaattct 53814640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 13840613 - 13840686
Alignment:
Q  18 cagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 91  Q
    ||||||||||||||||||||||||| || |||| ||| ||| ||||| ||||||||||||||||||||||||||    
T  13840613 cagaactagcgtgacttaagtcaagtaacgtgatttaagttacgtttcattttgcactagcgtgacttaagtca 13840686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 39685382 - 39685309
Alignment:
Q  18 cagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 91  Q
    ||||||||||||||||||||||||| || |||||||| ||| ||||| ||||||||| ||||||||||||||||    
T  39685382 cagaactagcgtgacttaagtcaagtaacgtgacttaagtttcgtttcattttgcaccagcgtgacttaagtca 39685309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 44430604 - 44430535
Alignment:
Q  21 aactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtc 90  Q
    |||||||||||||||||||||| || |||||||| ||||| ||| |||||||||||||||||||||||||    
T  44430604 aactagcgtgacttaagtcaagtaacgtgacttaagttgcatttcattttgcactagcgtgacttaagtc 44430535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 13843595 - 13843670
Alignment:
Q  182 catgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaatt 257  Q
    ||||||||||||| ||||||| ||| | | ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  13843595 catgttaagttgcttaagggtaaaatgatcttttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 13843670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 3860445 - 3860381
Alignment:
Q  27 cgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 91  Q
    ||||||||||||| || || |||||||| ||| ||||| || |||||||||||||||||||||||    
T  3860445 cgtgacttaagtctagtaacgtgacttaagttacgtttcatattgcactagcgtgacttaagtca 3860381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 15040726 - 15040678
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattcttt 261  Q
    |||||||| |||||||||||| |||||||| ||||||||||||||||||    
T  15040726 tttactttgggaatgagcgaatccatttgggtaatgagcagaattcttt 15040678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 4969921 - 4969874
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattct 259  Q
    ||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  4969921 ttttactttgggaatgagcggaaccatttgggtaatgagcagaattct 4969874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 260
Target Start/End: Original strand, 21566895 - 21567029
Alignment:
Q  126 tagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaag-gtattttactttagga 224  Q
    |||||||||||||||||| |||| |  |||||| || ||  | ||||| ||||||| |||||||||  ||||||||| ||||| |||||| || || |||    
T  21566895 tagcgtgacttaagtcacactacgttacttaagccatgtagctatttgtactagcgtatgttaagtcacgtaagggtaaaaagagtattt-acattggga 21566993  T
Q  225 atgagcgaaaccatttggataatgagcagaattctt 260  Q
    |||||  ||| ||||||| ||| |||||||||||||    
T  21566994 atgagaaaaatcatttgggtaaagagcagaattctt 21567029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 44836511 - 44836558
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattctt 260  Q
    |||||||||| |||||||| |||||||| |||||||||||||||||||    
T  44836511 tttactttagaaatgagcggaaccatttagataatgagcagaattctt 44836558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 6162714 - 6162760
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||| |||||||||| |||||||||| |||||||||||||||    
T  6162714 ttttactttgggaatgagcggaaccatttgggtaatgagcagaattc 6162760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 7665856 - 7665802
Alignment:
Q  135 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaa 189  Q
    |||||||||||||| | |||||||| |||||  ||||||||||||||||||||||    
T  7665856 ttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaa 7665802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 16931491 - 16931441
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattctttgt 263  Q
    ||||||||||||| |||||| || ||||| |||||||||||||||||||||    
T  16931491 tttactttaggaacgagcgatactatttgaataatgagcagaattctttgt 16931441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 40517556 - 40517601
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||    
T  40517556 tttactttaggaatgagcgaaaccgtttgggtaaagagcagaattc 40517601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 26998320 - 26998367
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattctt 260  Q
    |||| ||||| ||||||||||||||||||||| | |||||||||||||    
T  26998320 tttattttagaaatgagcgaaaccatttggatgaagagcagaattctt 26998367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 3860479 - 3860437
Alignment:
Q  12 cagagacagaactagcgtgacttaagtcaagcaaagtgactta 54  Q
    ||||||||||||||| ||| |||||||||||||| ||||||||    
T  3860479 cagagacagaactagtgtgccttaagtcaagcaacgtgactta 3860437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 35069479 - 35069524
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||||||||| ||||| |||| |||||| |||||||||||||||||    
T  35069479 tttactttagaaatgaacgaatccatttagataatgagcagaattc 35069524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 35485288 - 35485243
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||| |||||||||| ||  |||||||||||||||||||||    
T  35485288 tttactttaagaatgagcgatactgtttggataatgagcagaattc 35485243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 2325593 - 2325641
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 260  Q
    ||||||||| ||||||  ||||||||||| |||||||| ||||||||||    
T  2325593 ttttactttgggaatggacgaaaccatttagataatgaccagaattctt 2325641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 11343830 - 11343878
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 260  Q
    |||||||||  || |||||| ||||||||| ||||||||||||||||||    
T  11343830 ttttactttgagagtgagcggaaccatttgaataatgagcagaattctt 11343878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 19866779 - 19866731
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 260  Q
    ||||||||| ||||||||||| ||  ||||| |||||||||||||||||    
T  19866779 ttttactttgggaatgagcgatactgtttgggtaatgagcagaattctt 19866731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 73 - 258
Target Start/End: Complemental strand, 23672 - 23487
Alignment:
Q  73 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 172  Q
    |||||||||||||||||||| |||||||||||||||||| ||| || ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  23672 actagcgtgacttaagtcaaataacgtgacttaagttgcatttaattttgcactagcgtgacttaagtgacgctacctgtcttaagtcacgttccaattt 23573  T
Q  173 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||||||  |||||||| |||||||||| ||||||||||||||||    
T  23572 gcactagcgcatgttaagttgtgtaagggtaaaaaggtcttttactttgagaatgagcaaaaccatttgaataatgagcagaattc 23487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 23682 - 23605
Alignment:
Q  12 cagagacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagt 89  Q
    ||||||||||||||||||||||||||||||  || |||||||| ||||| ||||||||||||||||||||||||||||    
T  23682 cagagacagaactagcgtgacttaagtcaaataacgtgacttaagttgcatttaattttgcactagcgtgacttaagt 23605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 73 - 258
Target Start/End: Complemental strand, 49030418 - 49030232
Alignment:
Q  73 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 172  Q
    ||||||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||| ||||||    
T  49030418 actagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtcaggctacctgtcttaagtcacgttccaattt 49030319  T
Q  173 gcactagcgcatgttaagttgcgtaagg-gtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||||||||| ||||||||||||||||| || |||| || ||||||||| |||||||||||||||||||  |||  |||||||||||    
T  49030318 gcactagcgcgtgttaagttgcgtaaggtgtaaaaatgtgttttactttgggaatgagcgaaaccatttaaatacagagcagaattc 49030232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 49030428 - 49030349
Alignment:
Q  12 cagagacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 91  Q
    |||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  49030428 cagagacataactagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtca 49030349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 258
Target Start/End: Original strand, 28446449 - 28446608
Alignment:
Q  98 gtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgta 197  Q
    ||||||||||||||||| ||| ||| | |||||||| ||||||||||| || ||| |||||| |||||  || ||| |||||||||||||||  ||||||    
T  28446449 gtgacttaagttgcgttacattttgtactagcgtgagttaagtcacgcaacgtgtgttaagttacgttgtaa-ttgtactagcgcatgttaacatgcgta 28446547  T
Q  198 agggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
     |||       ||  |||||||| |||||||||||| |||||||| ||||||||| |||||    
T  28446548 ggggcatttcagtcatttactttgggaatgagcgaatccatttgggtaatgagcaaaattc 28446608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 11821206 - 11821160
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  11821206 ttttactttgggaatgaacgaaaccatttggataatgagcagaattc 11821160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 39650241 - 39650196
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||||||||||||||||||||||||||| | |||||||||||||||    
T  39650241 tttactttaggaatgagcgaaaccatttaggtaatgagcagaattc 39650196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 33401531 - 33401407
Alignment:
Q  135 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 234  Q
    |||||||||||||| | |||||||| |||||  ||||||||||||||||||||||  ||| ||||||      |||  ||||||||  |||||||||||     
T  33401531 ttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcataagggcatttcggtcatttactttgagaatgagcgaat 33401432  T
Q  235 ccatttggataatgagcagaattct 259  Q
    |||||||  ||||||||| ||||||    
T  33401431 ccatttgactaatgagcaaaattct 33401407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 33617767 - 33617643
Alignment:
Q  135 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 234  Q
    |||||||||||||| | |||||||| |||||  ||||||||||||||||||||||  ||| || |||      |||  ||||||||  |||||||||||     
T  33617767 ttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcataggggcatttcggtcatttactttgagaatgagcgaat 33617668  T
Q  235 ccatttggataatgagcagaattct 259  Q
    |||||||| ||||||||| ||||||    
T  33617667 ccatttgggtaatgagcataattct 33617643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 49033763 - 49033809
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattct 259  Q
    |||||||| |||||||||| ||||||||| |||||||||||||||||    
T  49033763 tttactttgggaatgagcggaaccatttgaataatgagcagaattct 49033809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 5119064 - 5119109
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||    
T  5119064 tttactttaggaatgagcaaaaccgtttggataaagagcagaattc 5119109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 3792498 - 3792534
Alignment:
Q  224 aatgagcgaaaccatttggataatgagcagaattctt 260  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3792498 aatgagcgaaaccatttggataatgagcataattctt 3792534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 45688354 - 45688306
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 260  Q
    ||||||||| |||||||||  ||||||||||||||||||| ||||||||    
T  45688354 ttttactttgggaatgagcagaaccatttggataatgagcggaattctt 45688306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 3792606 - 3792560
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||| | |||||||||||| |||||| |||||||||||||||    
T  3792606 ttttactttggaaatgagcgaaactatttgggtaatgagcagaattc 3792560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 28476015 - 28476061
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattct 259  Q
    ||||||||  ||||||||| |||||||||| ||||||||||||||||    
T  28476015 tttactttgagaatgagcggaaccatttgggtaatgagcagaattct 28476061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 45691080 - 45691126
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||| ||||||||||||||||||||  ||||||||| |||||    
T  45691080 ttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 45691222 - 45691268
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||| ||||||||||||||||||||  ||||||||| |||||    
T  45691222 ttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 45691364 - 45691410
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||| ||||||||||||||||||||  ||||||||| |||||    
T  45691364 ttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 25403890 - 25404009
Alignment:
Q  12 cagagacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgc 111  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25403890 cagagacagaactagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgaactagcgtgacttaagtcaagtaacgtgacttaagttgc 25403989  T
Q  112 gtttcatattgcattagcgt 131  Q
     |||||||||||| ||||||    
T  25403990 atttcatattgcactagcgt 25404009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 73 - 230
Target Start/End: Original strand, 25403900 - 25404057
Alignment:
Q  73 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 172  Q
    ||||||||||||||||||||| ||||||||||||||||||||| || ||| | ||||||||||||||||| |  || || |||||||  | |||||  ||    
T  25403900 actagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgaactagcgtgacttaagtcaagtaacgtgacttaagttgcatttcatatt 25403999  T
Q  173 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagc 230  Q
    ||||||||| |||||||||| ||||||||| ||||   || ||||||| |||||||||    
T  25404000 gcactagcgtatgttaagttacgtaagggtaaaaaaaaatattactttgggaatgagc 25404057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 260
Target Start/End: Original strand, 17436456 - 17436621
Alignment:
Q  95 aacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgc 194  Q
    |||||||||||||||||||| ||| ||| | |||||||| ||||||||||| ||   |||||||| |||||  ||||||||||||||||||||||  ||     
T  17436456 aacgtgacttaagttgcgttacattttgtactagcgtgagttaagtcacgcaacgcatcttaagttacgttgtaatttgcactagcgcatgttaacatgt 17436555  T
Q  195 gtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattctt 260  Q
    ||| ||       |||  |||||||| |||| ||||||| |||||||| |||||||||||||||||    
T  17436556 gtagggacatttcggtcatttactttgggaacgagcgaatccatttgggtaatgagcagaattctt 17436621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 24327076 - 24326944
Alignment:
Q  126 tagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaa 225  Q
    |||||||| ||||||||| |||  |||||||||||||||  || ||||||||| |||| |||||||   |||||||| |||| ||  |||| ||| ||||    
T  24327076 tagcgtgagttaagtcacactatttgtcttaagtcacgtagcattttgcactaacgcaagttaagtcaagtaagggtaaaaatgtcatttattttgggaa 24326977  T
Q  226 tgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||  ||||||  |||||||||||||||    
T  24326976 tgagcgaattcatttgagtaatgagcagaattc 24326944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 807202 - 807247
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||||||||||||||| | |||||||||| |||||||||||    
T  807202 tttactttaggaatgagcgaatctatttggataaagagcagaattc 807247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 31522568 - 31522613
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||||||| |||||||||| |||||||||| |||||||||||||||    
T  31522568 tttactttgggaatgagcggaaccatttgggtaatgagcagaattc 31522613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 32275804 - 32275849
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||||||| |||||||||| |||||||||||||||||||| |||||    
T  32275804 tttactttgggaatgagcggaaccatttggataatgagcataattc 32275849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 14153399 - 14153353
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattct 259  Q
    |||||||| ||||||||| ||| ||||||| ||||||||||||||||    
T  14153399 tttactttgggaatgagcaaaatcatttgggtaatgagcagaattct 14153353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 36933168 - 36933300
Alignment:
Q  126 tagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaa 225  Q
    ||||||||||||||||| |||| |||||||||| | |||  ||||||||||||||||||||||||||||||||| || ||||||| |||||||||  |||    
T  36933168 tagcgtgacttaagtcatgctatctgtcttaagccgcgtaccaatttgcactagcgcatgttaagttgcgtaagagtaaaaaggtcttttactttgagaa 36933267  T
Q  226 tgagcgaaaccatttggataatgagcagaattc 258  Q
    | |||||||||||||| ||||||||||||||||    
T  36933268 taagcgaaaccatttgaataatgagcagaattc 36933300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 28678009 - 28677885
Alignment:
Q  135 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 234  Q
    |||||||||||||| | | |||||| |||||  ||||| || ||||||||||||| || |||| ||||     |||  ||||||||||||||||||||      
T  28678009 ttaagtcacgctacttattttaagttacgttataattttcagtagcgcatgttaacttacgtaggggtatttcggtcatttactttaggaatgagcgatt 28677910  T
Q  235 ccatttggataatgagcagaattct 259  Q
    |||||||||||||||||||||||||    
T  28677909 ccatttggataatgagcagaattct 28677885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 252
Target Start/End: Original strand, 6705929 - 6706107
Alignment:
Q  74 ctagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttg 173  Q
    ||||||||  ||||||||   |||||| ||||||||||||  ||| ||| | |||||||| ||||||||||| || | | |||||  |||||  ||||||    
T  6705929 ctagcgtggtttaagtcacacaacgtggcttaagttgcgtaacattttgtactagcgtgagttaagtcacgcaacatatgttaagatacgttgtaatttg 6706028  T
Q  174 cactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagca 252  Q
    ||||||||||||||||  |||||| |||       ||  |||||||| | |||||||||| ||||||||||||||||||    
T  6706029 cactagcgcatgttaacatgcgtaggggcatttcagtcatttactttggaaatgagcgaatccatttggataatgagca 6706107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 4845346 - 4845302
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaatt 257  Q
    |||||||||||||||||||| || ||||| |||||||||||||||    
T  4845346 tttactttaggaatgagcgatactatttgaataatgagcagaatt 4845302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 1145186 - 1145139
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattctt 260  Q
    |||||||| ||||||||||||||  ||||||||||||||| |||||||    
T  1145186 tttactttgggaatgagcgaaactgtttggataatgagcataattctt 1145139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 34016047 - 34016002
Alignment:
Q  213 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    |||||||| |||||||||||| |||||| | |||||||||||||||    
T  34016047 tttactttgggaatgagcgaatccatttaggtaatgagcagaattc 34016002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 396 - 446
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctttg 262  Q
    ||||||||| ||||||||||||||||||||| ||| ||||| |||||||||    
T  396 ttttactttgggaatgagcgaaaccatttgggtaaagagcataattctttg 446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 1521 - 1475
Alignment:
Q  212 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 258  Q
    ||||||||||  |||||||| |||||||||| |||||||||||||||    
T  1521 ttttactttaaaaatgagcggaaccatttgggtaatgagcagaattc 1475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University