View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_high_60 (Length: 286)
Name: NF11856_high_60
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_high_60 |
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| [»] scaffold0790 (1 HSPs) |
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Alignment Details
Target: scaffold0790 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: scaffold0790
Description:
Target: scaffold0790; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 897 - 1151
Alignment:
| Q |
16 |
ttaggtgtttttaagcaccaggtatagtctaaagttatgaaatgaaccgtttttgtgcaaatgttttgttcttttgcggaaaagaaacttgatatttgtt |
115 |
Q |
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| T |
897 |
ttaggtgtttttaagcacggggtatagtctaaagttatgaaatgaatcgtttta-tgcaaatgttttgttcttttgcggaaaagaaacttaat---tgtt |
992 |
T |
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| Q |
116 |
ttaactctttgttcccctgaaccctaattaaataaaaaggaagaaaa---ggtaatttttgttgtgaggatggaaaccacgttgtgattcataggtttat |
212 |
Q |
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| T |
993 |
ttaactctttgttcccctgaaccataattaaataaaaaggaagaaaataaggtaaattttgttgtgagaatggaaaccacgttgtgattcataggtttat |
1092 |
T |
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| Q |
213 |
cgaaactttaagttaaacctccgtgtcattctgaattttcctatatatcgatccgttac |
271 |
Q |
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| T |
1093 |
cgaaactttcagttaaacctccgtatcattctgaattttcctagatattgatctgttac |
1151 |
T |
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