View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_high_67 (Length: 261)
Name: NF11856_high_67
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_high_67 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 51351476 - 51351643
Alignment:
| Q |
1 |
gaaacaaattatttcactgtttagttgatacataatttcactttaaattcagtgttacaaaatctattcaattcaaaattatatttgacgaatactcact |
100 |
Q |
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| T |
51351476 |
gaaacaaattatttcactgtttagttgatacataatttcactttaaattcagggttacaaaatctattcaattcaaaattatatttgacgaataatcact |
51351575 |
T |
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| Q |
101 |
caaacataattgagtgtgaagtgaagtgacaatgtttttatgttaaaagctaaaagcgttcattttcc |
168 |
Q |
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| T |
51351576 |
caaacataattgagtgtgaagtgaagtgacaatgtttttatgttaaaagctaaaagcgttcattttcc |
51351643 |
T |
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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 51351901 - 51351972
Alignment:
| Q |
182 |
ttgggaaaaaatgtttgttacttgtttgtgtgcatgtttcgagtgtttgttcaagtctcatgctttcttctct |
254 |
Q |
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| T |
51351901 |
ttgggaaaaaatgtt-gttacttgtttgtgtgcatgtttcgagtgtttgttcaagtctcatgctttcttctct |
51351972 |
T |
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