View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_high_76 (Length: 241)
Name: NF11856_high_76
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_high_76 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 51351297 - 51351131
Alignment:
| Q |
1 |
tcaccttcctcctaacaaactaattactaacatttgcctattcaaaaaatctaacactaacccaacagcagacaacagaattgctaaaatcgcatttaac |
100 |
Q |
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| T |
51351297 |
tcaccttcctcctaacaaactaattactaacatttgcctattcaaaaaatctaacactaacccaacagcagacaacagaattgctaaaatcgcatttaac |
51351198 |
T |
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| Q |
101 |
agacacaaaatcacttcccatagtttccattagtaaaagcacacattaaatcacttgtgattcaatc |
167 |
Q |
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| T |
51351197 |
agacacaaaatcacttcccatagtttccattagtaaaagcacacattaaatcacttgtgattcaatc |
51351131 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 40020304 - 40020263
Alignment:
| Q |
165 |
atctataactactctttatatcaactccataaaagagatttg |
206 |
Q |
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| T |
40020304 |
atctataactactctttatatcaactccataaaagagatttg |
40020263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 12038084 - 12038052
Alignment:
| Q |
9 |
ctcctaacaaactaattactaacatttgcctat |
41 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
12038084 |
ctcctaacaaactaactactaacatttgcctat |
12038052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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