View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_high_83 (Length: 234)
Name: NF11856_high_83
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_high_83 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 38483070 - 38483268
Alignment:
| Q |
21 |
ccctcaacaccgtcggtgacctccaccttcctcccaaatggcaaccacactacgacctcctaaattggctagccctctttttcggcttccagacagacaa |
120 |
Q |
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| T |
38483070 |
ccctcaacaccgtcggtgacctccaccttcctcccaaatggcaaccacactacgacctcctagattggctagccctctttttcggcttccagacagacaa |
38483169 |
T |
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| Q |
121 |
tgtccgcaaccaacgggaacatgtcctcctccatctcgccaatgctcagatgcgtctcaatcctcctccagacaacatcgattccctcgatgcctctgt |
219 |
Q |
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| T |
38483170 |
tgtccgcaaccaacgagaacatgtcctcctccatctcgccaatgctcagatgcgtctcaatcctcctccagacaacatcgattccctcgatgcctctgt |
38483268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 30117522 - 30117655
Alignment:
| Q |
86 |
tggctagccctctttttcggcttccagacagacaatgtccgcaaccaacgggaacatgtcctcctccatctcgccaatgctcagatgcgtctcaatcctc |
185 |
Q |
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||||| || ||||| |||||||| |||| |||||| ||||| || |||||||| ||| | | || || ||||||||||||||||||||||||| ||| | |
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| T |
30117522 |
tggctcgctctcttcttcggctttcagaaagacaacgtccgtaatcaacgggagcatcttgttcttcacctcgccaatgctcagatgcgtctcactccgc |
30117621 |
T |
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| Q |
186 |
ctccagacaacatcgattccctcgatgcctctgt |
219 |
Q |
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| || || ||||||||| | ||||| ||| |||| |
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| T |
30117622 |
cgccggataacatcgatactctcgacgccgctgt |
30117655 |
T |
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