View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11856_high_89 (Length: 215)
Name: NF11856_high_89
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_high_89 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 51895360 - 51895555
Alignment:
| Q |
4 |
cttatcaaatcaaatgaatgataagttagttttagaatagcttaactgtagtttttagtctttttcagaatattctctcctccattaatgaacaccaaca |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51895360 |
cttatcaaatcaaatgaatgataagttagttttagaatagcttaactgtagtttttagtctttttcggaatattctctcctccattaatgaacaccaaca |
51895459 |
T |
|
| Q |
104 |
aaattcaaaattgttcattatacacaaacaacaaatcattagtgtaattgaaataacgctttactctctactaatcactttacaaatgagcaaaat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51895460 |
aaattcaaaattgttcattatacacaaacaacaaatcattagtgtaattgaaataacgctttgctctctactaatcactttacaaatgagcaaaat |
51895555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 51895318 - 51895363
Alignment:
| Q |
1 |
tagcttatcaaatcaaatgaatgataagttagttttagaatagctta |
47 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
51895318 |
tagcttatcaaatcaaatgaatga-aagttagttttagaataactta |
51895363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 51895071 - 51895139
Alignment:
| Q |
26 |
aagttagttttagaatagcttaactgtagtttttagtctttttcagaatattctctcctccattaatgaa |
95 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||||||| || |||| ||||| | |||||||| |||| |
|
|
| T |
51895071 |
aagttagttttagaatagcttaa-tgtaattgttagtcttgtttagaacattcttttctccattagtgaa |
51895139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University