View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11856_low_12 (Length: 561)
Name: NF11856_low_12
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 29067919 - 29067395
Alignment:
| Q |
1 |
acctattgcacagatcagttcaagactcagcagggttctcatccgagcttattgcaaaggcaagtacgtcatcttcattcatgaggagattaagggatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29067919 |
acctattgcacagatcagttcaagactcagcagggttctcattcgagcttattgcaaaggcaagtacgtcatcttcattcatgaggagattaagggatat |
29067820 |
T |
|
| Q |
101 |
ggtaaagttattttacactgatacccgaccttaactcttcaattttccgtatcatattggtcggtttttaaataaaaccagacaggtaactgtttgttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29067819 |
ggtaaagttattttacactgatacccgaccataactcttcaattttccgtatcatattggtcggtttttaaataaaaccagacaggtaactgtttgtttt |
29067720 |
T |
|
| Q |
201 |
gatttttaattttcaaaaatataagcgtaattgtttgttggcttggcaatttgtgattggttttaagtctaaaacaattttatattgagggtacactact |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29067719 |
gatttttcattttcaaaaatataagcgtaattgtttgttggcttggcaatttgtgattggttttaagtctaaaacaattttatattgagggtacactgct |
29067620 |
T |
|
| Q |
301 |
gggcatgtttgatcaagtttttcattactaatttcagggtatgtttctgcagctgtaatacatgagaagcttaattcaagtgaagagaagcttacaagaa |
400 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| |
|
|
| T |
29067619 |
gggcatgtttgatcaattttttcattactaatttcagggtatgtttctgcagttgtattacatgagaagc---------------------ttacaagaa |
29067541 |
T |
|
| Q |
401 |
agttaaaagaggttgatgatggttaatgacagatggagttggttaggaaattagttagattatctgtttcttgtttcgcaagctactacactatacggtt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29067540 |
agttaaaagaggttgatgatggttaatgacagatggagttggttaggaaattagttagattatctgtttcttgtttcgcaagctactacactatacggtt |
29067441 |
T |
|
| Q |
501 |
gggctagcttagcttactatgaatcttcactcttgtatatatattt |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29067440 |
gggctagcttagcttactatgaatcttcactcttgtatatatattt |
29067395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 34003768 - 34003727
Alignment:
| Q |
25 |
actcagcagggttctcatccgagcttattgcaaaggcaagta |
66 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
34003768 |
actcagcagggttctcatgtgagcttattgcaaatgcaagta |
34003727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University