View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11856_low_13 (Length: 552)

Name: NF11856_low_13
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11856_low_13
NF11856_low_13
[»] chr8 (1 HSPs)
chr8 (1-530)||(14230067-14230610)
[»] chr5 (2 HSPs)
chr5 (1-35)||(11596478-11596512)
chr5 (1-34)||(28296331-28296364)
[»] scaffold0571 (1 HSPs)
scaffold0571 (1-42)||(7685-7726)
[»] chr7 (1 HSPs)
chr7 (1-34)||(38134429-38134462)
[»] chr4 (3 HSPs)
chr4 (1-34)||(14465317-14465350)
chr4 (1-34)||(18513264-18513297)
chr4 (2-34)||(7012069-7012101)
[»] chr2 (3 HSPs)
chr2 (1-34)||(18570975-18571008)
chr2 (1-34)||(40681985-40682018)
chr2 (2-34)||(10535783-10535815)
[»] chr1 (1 HSPs)
chr1 (2-34)||(42325563-42325595)


Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 14230067 - 14230610
Alignment:
Q  1 ttgaattatgtcattttctcaaatgattatcggtacccatgtcgtgtatctgtgccggtgtttcataggttttccagaattcgtgttctaattgatctgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14230067 ttgaattatgtcattttctcaaatgattatcggtacccatgtcgtgtgtctgtgccagtgtttcataggttttccagaattcgtgttctaattgatctgc 14230166  T
Q  101 accatggccttattttaccaaatgatgtttcatattataaagtcaatgcttaggaaggggacgatttatgattcaaatgtctctctattgtcttttcatc 200  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||    
T  14230167 accatggccttattttaccaaatgatgttttatattataatgtcaatgcttaggaagggaacaatttatgattcaaatgtctctctattgtctttttatc 14230266  T
Q  201 cttgtc-ttttttgtaccttctttgagaaccaattcattgaccctatgcctgcaaagccccatatttgacctggtcatgttaatcaactttgattatttt 299  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14230267 cttgtctttttttctaccttctttgagaaccaattcattgaccctatgcctgcaaagccccatatttgacctggtcatgttaataaactttgattatttt 14230366  T
Q  300 tatgtctttattctgtannnnnnngggcttgtttatttgtaactaatcaggactggtcaaagctagtagttgtgaagaaccatgtcaannnnnnnnnnnn 399  Q
      |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  14230367 cgtgtctttattctgtatttttttgggcttgtttatttgtaactaatcaggactggtcaaagctagtagttgtgaagaaccatgtcaattttttgttttt 14230466  T
Q  400 aaatttatacacatatcgatttcatcaccatttc---------------tttgacttttgagctatactttttatattaatgatcaattctactcgtcat 484  Q
    |||  |||||||| ||||||||||||||||||||               |||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  14230467 aaa--tatacacacatcgatttcatcaccatttcttttgatgagttgggtttgacttttgagctatactatttatattaatgatcaattctactagtcat 14230564  T
Q  485 tgcttcggacggcatccaatgctttcctaaagtttcaatttgacaa 530  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  14230565 tgctttggacggcatccaatgctttcctaaagtttcactttgacaa 14230610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11596478 - 11596512
Alignment:
Q  1 ttgaattatgtcattttctcaaatgattatcggta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  11596478 ttgaattatgtcattttctcaaattattatcggta 11596512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 28296364 - 28296331
Alignment:
Q  1 ttgaattatgtcattttctcaaatgattatcggt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  28296364 ttgaattatgtcattttctcaaattattatcggt 28296331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7726 - 7685
Alignment:
Q  1 ttgaattatgtcattttctcaaatgattatcggtacccatgt 42  Q
    |||||||||||||||||||||||| |||||| ||||| ||||    
T  7726 ttgaattatgtcattttctcaaattattatcagtaccaatgt 7685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38134429 - 38134462
Alignment:
Q  1 ttgaattatgtcattttctcaaatgattatcggt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  38134429 ttgaattatgtcattttctcaaattattatcggt 38134462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 14465317 - 14465350
Alignment:
Q  1 ttgaattatgtcattttctcaaatgattatcggt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  14465317 ttgaattatgtcattttctcaaattattatcggt 14465350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 18513264 - 18513297
Alignment:
Q  1 ttgaattatgtcattttctcaaatgattatcggt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  18513264 ttgaattatgtcattttctcaaattattatcggt 18513297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 7012101 - 7012069
Alignment:
Q  2 tgaattatgtcattttctcaaatgattatcggt 34  Q
    ||||||||||||||||||||||| |||||||||    
T  7012101 tgaattatgtcattttctcaaattattatcggt 7012069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 18571008 - 18570975
Alignment:
Q  1 ttgaattatgtcattttctcaaatgattatcggt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  18571008 ttgaattatgtcattttctcaaattattatcggt 18570975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 40682018 - 40681985
Alignment:
Q  1 ttgaattatgtcattttctcaaatgattatcggt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  40682018 ttgaattatgtcattttctcaaattattatcggt 40681985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 10535783 - 10535815
Alignment:
Q  2 tgaattatgtcattttctcaaatgattatcggt 34  Q
    ||||||||||||||||||||||| |||||||||    
T  10535783 tgaattatgtcattttctcaaattattatcggt 10535815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 42325595 - 42325563
Alignment:
Q  2 tgaattatgtcattttctcaaatgattatcggt 34  Q
    ||||||||||||||||||||||| |||||||||    
T  42325595 tgaattatgtcattttctcaaattattatcggt 42325563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University