View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_15 (Length: 530)
Name: NF11856_low_15
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_15 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 129 - 530
Target Start/End: Complemental strand, 28274782 - 28274378
Alignment:
| Q |
129 |
atactagcaatatctcattcaaatgtcaatccatccattctatatgagtatgctacccttgaaacataagcttttccatccatatttacttgcacgggcg |
228 |
Q |
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| T |
28274782 |
atactagcaatatctcattcaaatgtcaatccatccattctatatgagtatgctacccttgaaacataaccttttccatccatatctacttgcacaggcg |
28274683 |
T |
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| Q |
229 |
ttgccacattcaacggaactcgtagccttaataccattgggaaggaatattccgacacatgaagccagttgcacgcttgccaaacctcgactttggtacc |
328 |
Q |
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| T |
28274682 |
ttgccacattcaactgaacacgtcgccttaataccattgggaaggaagactccgacacatgaagccagttgcacgattgccaaacctcaactttggtacc |
28274583 |
T |
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| Q |
329 |
actgttgggcatgaggtggtccggtggatcatcacattaggtcttgaacaatcatacaagtgataaagacaccacactttaacttgcagagataagatag |
428 |
Q |
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| T |
28274582 |
actgttgggcatgaggtggtccggtggatcatcatattaggtcttgaacaatcatacaagtgataaagacaccacactttaacttacagagataagacag |
28274483 |
T |
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| Q |
429 |
tagacttcgatattatatcaaatcaatgttcaattcaattaagaaatatatttgttaaataggataaatac---attcgatgaagaggactatgagaaat |
525 |
Q |
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| T |
28274482 |
tagacttcgatattatatcaaatcaatgttcaattcaattaagaaatatatttcttaaataggataaatacattattcgatgaagaggactatgagaaat |
28274383 |
T |
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| Q |
526 |
caata |
530 |
Q |
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| T |
28274382 |
caata |
28274378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 28275107 - 28274973
Alignment:
| Q |
4 |
aatgagatggacatcacactttttaatttaaaatcttaagacatagtttacggatcccctcatttataacgtgtttaccatttacttttccccatccaag |
103 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||| | | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28275107 |
aatgagaaagacatcacactttttaatttaaaatcttaagacataatttacgggttctctcatttataacgtgtttaccatttacttttccccatccaag |
28275008 |
T |
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| Q |
104 |
gtgtgacatattactcccatttgctatactagcaa |
138 |
Q |
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| T |
28275007 |
gtgtgacatactactcccatttgctatactagcaa |
28274973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 16801344 - 16801398
Alignment:
| Q |
354 |
ggatcatcacattaggtcttgaacaatcatacaagtgataaagacaccacacttt |
408 |
Q |
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| T |
16801344 |
ggatcataacatcaggtcttaaacaatcatacaagtgagaaaaacatcacacttt |
16801398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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