View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11856_low_16 (Length: 520)

Name: NF11856_low_16
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11856_low_16
NF11856_low_16
[»] chr3 (19 HSPs)
chr3 (139-520)||(36326202-36326576)
chr3 (1-188)||(36313718-36313905)
chr3 (312-520)||(30911921-30912141)
chr3 (312-514)||(55211759-55211968)
chr3 (129-214)||(36333923-36334008)
chr3 (386-515)||(32414686-32414821)
chr3 (7-99)||(36321124-36321216)
chr3 (142-189)||(36328097-36328144)
chr3 (456-520)||(33328226-33328290)
chr3 (150-214)||(36309763-36309826)
chr3 (7-75)||(36326060-36326128)
chr3 (138-185)||(30223140-30223187)
chr3 (153-185)||(29751894-29751926)
chr3 (3-75)||(36333791-36333863)
chr3 (143-186)||(30201215-30201258)
chr3 (148-183)||(30227393-30227428)
chr3 (42-79)||(29857007-29857044)
chr3 (149-186)||(30239076-30239113)
chr3 (488-520)||(14029381-14029413)
[»] chr7 (11 HSPs)
chr7 (312-520)||(42513126-42513346)
chr7 (312-508)||(38572287-38572495)
chr7 (407-504)||(41712265-41712364)
chr7 (462-520)||(11206499-11206557)
chr7 (441-520)||(30456312-30456392)
chr7 (411-520)||(49017102-49017213)
chr7 (460-515)||(6102928-6102983)
chr7 (441-520)||(30452707-30452783)
chr7 (138-186)||(16644731-16644779)
chr7 (138-186)||(17619092-17619140)
chr7 (313-393)||(11205731-11205811)
[»] chr5 (7 HSPs)
chr5 (312-520)||(8123394-8123614)
chr5 (312-520)||(671328-671548)
chr5 (457-520)||(41709523-41709586)
chr5 (441-519)||(24108702-24108783)
chr5 (312-393)||(41709389-41709470)
chr5 (312-367)||(19797245-19797300)
chr5 (138-186)||(11635006-11635054)
[»] chr6 (8 HSPs)
chr6 (319-520)||(4834590-4834805)
chr6 (323-520)||(7415516-7415725)
chr6 (323-520)||(7426463-7426672)
chr6 (323-520)||(7422524-7422733)
chr6 (400-514)||(33242813-33242928)
chr6 (312-393)||(13886454-13886535)
chr6 (482-520)||(13886589-13886627)
chr6 (323-376)||(33242726-33242779)
[»] chr1 (8 HSPs)
chr1 (311-520)||(18583950-18584171)
chr1 (312-430)||(13087573-13087700)
chr1 (455-520)||(23405539-23405604)
chr1 (457-514)||(13087701-13087759)
chr1 (144-186)||(16955661-16955703)
chr1 (310-367)||(21076204-21076261)
chr1 (491-520)||(9893800-9893829)
chr1 (313-393)||(23405689-23405769)
[»] chr2 (3 HSPs)
chr2 (355-476)||(31211598-31211731)
chr2 (480-520)||(31211859-31211899)
chr2 (455-514)||(45327474-45327533)
[»] chr8 (5 HSPs)
chr8 (455-520)||(44761988-44762053)
chr8 (455-520)||(44765295-44765360)
chr8 (312-393)||(44765129-44765210)
chr8 (312-393)||(44761823-44761904)
chr8 (461-520)||(14276625-14276685)
[»] chr4 (7 HSPs)
chr4 (312-393)||(36050519-36050600)
chr4 (312-393)||(36053778-36053859)
chr4 (346-474)||(20441029-20441168)
chr4 (455-514)||(27387641-27387700)
chr4 (455-520)||(55322398-55322464)
chr4 (460-520)||(24733642-24733702)
chr4 (312-401)||(55322549-55322638)


Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 139 - 520
Target Start/End: Original strand, 36326202 - 36326576
Alignment:
Q  139 atgcgaatagtgcgccacatgagaggatccttgcaaacgttccaccattgcagacacacaccgcatgcacttgtcaatatatcatctacacaaattactc 238  Q
    ||||||||||||| ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36326202 atgcgaatagtgcaccacatgagaggatccttgc-------ccaccattgcagacacacaccgcatgcacttgtcaatatatcatctacacaaattactc 36326294  T
Q  239 tcccttgtgtttcctgcatggctctttttgatgtcatcgcaatgtgacatcaaaagttaatgacttgccgtattgatagcatatttagaataatgagtat 338  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36326295 tcccttgtgtttcctgcatggctcttcttgatgtcatcgcaatgtgacatcaaaagttaatgacttgccgtattgatagcatatttagaataatgagtat 36326394  T
Q  339 taatgtggtgactcatctagttctagaagttattatgactcacattaatctagaaggtatcttgttaggggatgatattgagtatgttagggtgcactta 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36326395 taatgtggtgactcatctagttctagaagttattatgactcacattaatctagaaggtatcttgttaggggatgatattgagtatgttagggtgcactta 36326494  T
Q  439 ggttattatgagtatgcaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttc 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36326495 ggttattatgagtatgcaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttc 36326576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 36313718 - 36313905
Alignment:
Q  1 ttatcagctatgcatttgaggatatcatcggtgcaataattctcaatattaatgtctttaagatgaccgcaacttcgtttgacaactttgtaaaaaatcc 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  36313718 ttatcagctatgcatttgaggatatcatcggtgcaataatactcaatattaatgtctttaagatgaccacaacttcggttgacaactttgtaaaaaatcc 36313817  T
Q  101 tcgtaaaacgtaggtaggataaatcagagatgtagcacatgcgaatagtgcgccacatgagaggatccttgcaaacgttccaccattg 188  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||    
T  36313818 tcctaaaacgtaggtaggataaatcacagatgtagcacatgcgaatagtgcgccacatgagaggatccttgcaaatcttcaaccattg 36313905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 312 - 520
Target Start/End: Original strand, 30911921 - 30912141
Alignment:
Q  312 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaagg----------tatctt 401  Q
    |||||| ||| ||||||||||||||| ||||||| ||||||   |||||||||||||||||||||||||| |||||||||||||          ||||||    
T  30911921 tgataggatacttagaataatgagtactaatgtgatgactcggttagttctagaagttattatgactcaccttaatctagaaggatctaaaatatatctt 30912020  T
Q  402 gttaggggatgatattgagtatgttagggtgcacttaggttattatgagtatgca--agtctatataagcattgtatgctttattatgagaatcaatgaa 499  Q
    |||||||||| ||||||||||||||||||||||||||  ||||| ||||||||||  |||||||||||| ||||||||| ||||||||||||||||||||    
T  30912021 gttaggggataatattgagtatgttagggtgcacttattttattgtgagtatgcacaagtctatataagtattgtatgccttattatgagaatcaatgaa 30912120  T
Q  500 aaatataatgaattttctttc 520  Q
    |||||||||||||||||||||    
T  30912121 aaatataatgaattttctttc 30912141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 312 - 514
Target Start/End: Complemental strand, 55211968 - 55211759
Alignment:
Q  312 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaagg----------tatctt 401  Q
    |||||| ||||||||||||| ||| | |||||||| |||||  ||||||||| ||||||| | ||||||  |||||||| ||||          ||| ||    
T  55211968 tgataggatatttagaataaggagcactaatgtggcgactcggctagttctaaaagttatcacgactcatcttaatctaaaaggatccataaggtatatt 55211869  T
Q  402 gttaggggatgatattgagtatgttagggtgcacttaggttattatgagtatg--caagtctatataagcattgtatgctttattatgagaatcaatgaa 499  Q
    | |||||||| ||||||||||||||||||||||||||  ||||||||| ||||  |||||||||||     |||||||| ||||||||||||||||||||    
T  55211868 ggtaggggataatattgagtatgttagggtgcacttatcttattatgaatatgcacaagtctatat-----ttgtatgccttattatgagaatcaatgaa 55211774  T
Q  500 aaatataatgaattt 514  Q
    |||||||||||||||    
T  55211773 aaatataatgaattt 55211759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 36333923 - 36334008
Alignment:
Q  129 gatgtagcacatgcgaatagtgcgccacatgagaggatccttgcaaacgttccaccattgcagacacacaccgcatgcacttgtca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||| | ||| ||||| ||||    
T  36333923 gatgtagcacatgcgaatagtgcgccacatgagaggatccttgcaaatgttccaccattgtggacacactcggcaagcactcgtca 36334008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 386 - 515
Target Start/End: Original strand, 32414686 - 32414821
Alignment:
Q  386 atctagaaggtatcttgttaggggatgatattgagtatgttagggtgcacttaggttattatgagtatgca------agtctatataagcattgtatgct 479  Q
    ||||||||||||| ||||  |||||| ||||| ||||||||| ||||||||||  ||||| ||||| ||||      ||||||||||| ||||||||||     
T  32414686 atctagaaggtatattgtctggggataatattaagtatgttatggtgcacttatcttattttgagtttgcacaaacaagtctatataaacattgtatgcc 32414785  T
Q  480 ttattatgagaatcaatgaaaaatataatgaatttt 515  Q
    |||||| |||||||||| ||||||||||||| ||||    
T  32414786 ttattacgagaatcaataaaaaatataatgattttt 32414821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 36321124 - 36321216
Alignment:
Q  7 gctatgcatttgaggatatcatcggtgcaataattctcaatattaatgtctttaagatgaccgcaacttcgtttgacaactttgtaaaaaatc 99  Q
    ||||||||||||||| |||||| ||||||||||| |||||||| ||||| || ||||||||||||||| ||||||| ||| ||| || |||||    
T  36321124 gctatgcatttgagggtatcattggtgcaataatactcaatatcaatgttttcaagatgaccgcaactccgtttgataacattgcaacaaatc 36321216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 36328097 - 36328144
Alignment:
Q  142 cgaatagtgcgccacatgagaggatccttgcaaacgttccaccattgc 189  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  36328097 cgaatagttcgccacatgacaggatccttgcaaacgttccaccattgc 36328144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 456 - 520
Target Start/End: Original strand, 33328226 - 33328290
Alignment:
Q  456 aagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttc 520  Q
    |||||| ||||||||||||||||||||| || |||| |||||||| ||||||| ||||| |||||    
T  33328226 aagtctgtataagcattgtatgctttataattagaaccaatgaaagatataatcaatttcctttc 33328290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 36309763 - 36309826
Alignment:
Q  150 gcgccacatgagaggatccttgcaaacgttccaccattgcagacacacaccgcatgcacttgtca 214  Q
    ||||||||| |||||||||||||||| ||||||||||||| |||||||  |||||||||| ||||    
T  36309763 gcgccacattagaggatccttgcaaatgttccaccattgcggacacac-tcgcatgcactcgtca 36309826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 36326060 - 36326128
Alignment:
Q  7 gctatgcatttgaggatatcatcggtgcaataattctcaatattaatgtctttaagatgaccgcaactt 75  Q
    |||||||||||||||| ||||| ||||||| ||  |||||||| |||| ||| ||||||||||||||||    
T  36326060 gctatgcatttgaggagatcattggtgcaaaaacgctcaatatcaatgacttcaagatgaccgcaactt 36326128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 30223187 - 30223140
Alignment:
Q  138 catgcgaatagtgcgccacatgagaggatccttgcaaacgttccacca 185  Q
    |||| |||| |||||||||||||||||||||||||||| |||||||||    
T  30223187 catgtgaatggtgcgccacatgagaggatccttgcaaatgttccacca 30223140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 29751926 - 29751894
Alignment:
Q  153 ccacatgagaggatccttgcaaacgttccacca 185  Q
    |||||||||||||||||||||||||||||||||    
T  29751926 ccacatgagaggatccttgcaaacgttccacca 29751894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 36333791 - 36333863
Alignment:
Q  3 atcagctatgcatttgaggatatcatcggtgcaataattctcaatattaatgtctttaagatgaccgcaactt 75  Q
    ||||||||||||||| |||| ||||||| ||||| ||  || ||||| |||||||| ||||||||| ||||||    
T  36333791 atcagctatgcatttaaggagatcatcgatgcaaaaacgcttaatatcaatgtcttcaagatgaccacaactt 36333863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 30201258 - 30201215
Alignment:
Q  143 gaatagtgcgccacatgagaggatccttgcaaacgttccaccat 186  Q
    |||| ||| |||||||||||||||||||||||| ||||||||||    
T  30201258 gaatggtgtgccacatgagaggatccttgcaaatgttccaccat 30201215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 183
Target Start/End: Complemental strand, 30227428 - 30227393
Alignment:
Q  148 gtgcgccacatgagaggatccttgcaaacgttccac 183  Q
    |||||||||||||||||||||||||||| |||||||    
T  30227428 gtgcgccacatgagaggatccttgcaaatgttccac 30227393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 29857044 - 29857007
Alignment:
Q  42 ctcaatattaatgtctttaagatgaccgcaacttcgtt 79  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  29857044 ctcaatattgatgtcttcaagatgaccgcaacttcgtt 29857007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 30239113 - 30239076
Alignment:
Q  149 tgcgccacatgagaggatccttgcaaacgttccaccat 186  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  30239113 tgcgccacatgagaggatccttgcatatgttccaccat 30239076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 488 - 520
Target Start/End: Original strand, 14029381 - 14029413
Alignment:
Q  488 agaatcaatgaaaaatataatgaattttctttc 520  Q
    ||||||||||||||||||||||||||| |||||    
T  14029381 agaatcaatgaaaaatataatgaatttcctttc 14029413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 312 - 520
Target Start/End: Complemental strand, 42513346 - 42513126
Alignment:
Q  312 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaagg----------tatctt 401  Q
    |||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||          | | ||    
T  42513346 tgataggatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgactcaccttaatctagaaggatctagaaggtctatt 42513247  T
Q  402 gttaggggatgatattgagtatgttagggtgcacttaggttattatgagtatgca--agtctatataagcattgtatgctttattatgagaatcaatgaa 499  Q
    |||||||||| ||||||||||||||||||| ||||||  ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  42513246 gttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaa 42513147  T
Q  500 aaatataatgaattttctttc 520  Q
    |||||||||||||||||||||    
T  42513146 aaatataatgaattttctttc 42513126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 312 - 508
Target Start/End: Complemental strand, 38572495 - 38572287
Alignment:
Q  312 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatcta----------gaaggtatctt 401  Q
    |||||| ||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||||||||          |||||||||||    
T  38572495 tgatagtatatttagaataatgagtactaatgtgctgactcagctagttctagaagttattatgactcaccttaatctaaaaggatctagaaggtatctt 38572396  T
Q  402 gttaggggatgatattgagtatgttagggtgcacttaggttattatgagtatg--caagtctatataagcattgtatgctttattatgagaatcaatgaa 499  Q
    |||||||||| |||||||||| |||||||| ||||||  ||||||||| ||||  ||||||||||||| |||||||||| ||||||||||||| ||| ||    
T  38572395 gttaggggataatattgagtaagttagggtacacttatcttattatgaatatgcccaagtctatataaacattgtatgccttattatgagaattaataaa 38572296  T
Q  500 aaatataat 508  Q
    |||||||||    
T  38572295 aaatataat 38572287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 407 - 504
Target Start/End: Original strand, 41712265 - 41712364
Alignment:
Q  407 gggatgatattgagtatgttagggtgcacttaggttattatgagtatgca--agtctatataagcattgtatgctttattatgagaatcaatgaaaaata 504  Q
    ||||| ||||| ||||||||||||||||||||  |||||||||||| |||  |||||||||||| ||||||||  ||||||||||||| |||||||||||    
T  41712265 gggataatattaagtatgttagggtgcacttattttattatgagtaggcacaagtctatataagtattgtatgtcttattatgagaatgaatgaaaaata 41712364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 462 - 520
Target Start/End: Original strand, 11206499 - 11206557
Alignment:
Q  462 atataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttc 520  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11206499 atataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttc 11206557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 441 - 520
Target Start/End: Original strand, 30456312 - 30456392
Alignment:
Q  441 ttattatgagtatgcaa-gtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttc 520  Q
    ||||||||||||||||| ||||||||||||||| ||||| |||| || ||||  |||||||||||||||||||||||||||    
T  30456312 ttattatgagtatgcaaagtctatataagcattatatgccttatgattagaacgaatgaaaaatataatgaattttctttc 30456392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 411 - 520
Target Start/End: Original strand, 49017102 - 49017213
Alignment:
Q  411 tgatattgagtatgttagggtgcacttaggttattatgagtatgca--agtctatataagcattgtatgctttattatgagaatcaatgaaaaatataat 508  Q
    ||||||||||||||||| | ||||||||  ||||||||| ||| ||  ||| | |||||||||||||||| ||||||||||| | |||||||||||||||    
T  49017102 tgatattgagtatgttatgatgcacttatcttattatgactatccacaagtttgtataagcattgtatgccttattatgagacttaatgaaaaatataat 49017201  T
Q  509 gaattttctttc 520  Q
      ||||||||||    
T  49017202 atattttctttc 49017213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 515
Target Start/End: Original strand, 6102928 - 6102983
Alignment:
Q  460 ctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaatttt 515  Q
    |||||||||||||||||  || || || ||||||||||||||||||||||||||||    
T  6102928 ctatataagcattgtatctttcatgattagaatcaatgaaaaatataatgaatttt 6102983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 520
Target Start/End: Original strand, 30452707 - 30452783
Alignment:
Q  441 ttattatgagtatgcaa-gtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttc 520  Q
    ||||||||||||||||| |||||||||    |||||||| |||| || ||||  |||||||||||||||||||||||||||    
T  30452707 ttattatgagtatgcaaagtctatata----ttgtatgccttatgattagaacgaatgaaaaatataatgaattttctttc 30452783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 16644731 - 16644779
Alignment:
Q  138 catgcgaatagtgcgccacatgagaggatccttgcaaacgttccaccat 186  Q
    |||| |||| ||||||||||||||||| |||||||||| ||||||||||    
T  16644731 catgtgaatggtgcgccacatgagaggttccttgcaaatgttccaccat 16644779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 17619092 - 17619140
Alignment:
Q  138 catgcgaatagtgcgccacatgagaggatccttgcaaacgttccaccat 186  Q
    |||| |||| ||||||||||||||||| |||||||||| ||||||||||    
T  17619092 catgtgaatggtgcgccacatgagaggttccttgcaaatgttccaccat 17619140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 393
Target Start/End: Original strand, 11205731 - 11205811
Alignment:
Q  313 gatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaa 393  Q
    ||||| |||| |||||||  || ||| |||||||||||||  ||||||||||||  || |||||||||  |||||||||||    
T  11205731 gataggatatctagaatatggaatataaatgtggtgactctcctagttctagaaagtagtatgactcatcttaatctagaa 11205811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 6e-63; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 312 - 520
Target Start/End: Original strand, 8123394 - 8123614
Alignment:
Q  312 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaagg----------tatctt 401  Q
    |||||| ||||||||||||| ||| | |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||          | | ||    
T  8123394 tgataggatatttagaataaggagcactaatctggtgactcatctagttctagaagttattatgactgaccttaatctagaaggatctagaagatctatt 8123493  T
Q  402 gttaggggatgatattgagtatgttagggtgcacttaggttattatgagtatgca--agtctatataagcattgtatgctttattatgagaatcaatgaa 499  Q
    |||||||||| ||||||||||||||||||| ||||||  ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  8123494 gttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaa 8123593  T
Q  500 aaatataatgaattttctttc 520  Q
    |||||||||||||||||||||    
T  8123594 aaatataatgaattttctttc 8123614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 312 - 520
Target Start/End: Original strand, 671328 - 671548
Alignment:
Q  312 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaagg----------tatctt 401  Q
    |||||| ||||||||||||| ||| |||||| | |||||||  ||| ||||||| ||||||||||||||| |||||||||||||          ||| ||    
T  671328 tgataggatatttagaataaggagcattaatatagtgactcggctaattctagatgttattatgactcaccttaatctagaaggatccataagatatatt 671427  T
Q  402 gttaggggatgatattgagtatgttagggtgcacttaggttattatgagtatgca--agtctatataagcattgtatgctttattatgagaatcaatgaa 499  Q
    |||||||||| |||||||||| |||||||| ||||||  ||||||||||||||||  ||| ||||||| |||||||||| ||||||||||||| ||||||    
T  671428 gttaggggataatattgagtaggttagggtacacttatcttattatgagtatgcacaagtttatataatcattgtatgccttattatgagaattaatgaa 671527  T
Q  500 aaatataatgaattttctttc 520  Q
    |||||||||||||||||||||    
T  671528 aaatataatgaattttctttc 671548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 457 - 520
Target Start/End: Original strand, 41709523 - 41709586
Alignment:
Q  457 agtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttc 520  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41709523 agtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttc 41709586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 441 - 519
Target Start/End: Original strand, 24108702 - 24108783
Alignment:
Q  441 ttattatgagtatgcaa---gtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttcttt 519  Q
    |||||||||||||||||   ||||||||||||||||||||  |||| || |||| |||||||||||||||||||||| ||||    
T  24108702 ttattatgagtatgcaacaagtctatataagcattgtatgtcttatgattagaaccaatgaaaaatataatgaatttccttt 24108783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 393
Target Start/End: Original strand, 41709389 - 41709470
Alignment:
Q  312 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaa 393  Q
    |||||| |||| |||||||| || ||| ||||||||||||| |||||||||||||| || |||||||||  |||||||||||    
T  41709389 tgataggatatctagaataaggaatataaatgtggtgactcctctagttctagaaggtagtatgactcatcttaatctagaa 41709470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 367
Target Start/End: Original strand, 19797245 - 19797300
Alignment:
Q  312 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaag 367  Q
    |||||| |||||||||||||  ||||| |||||| |||||||||||||||| ||||    
T  19797245 tgataggatatttagaataacaagtataaatgtgatgactcatctagttctggaag 19797300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 11635054 - 11635006
Alignment:
Q  138 catgcgaatagtgcgccacatgagaggatccttgcaaacgttccaccat 186  Q
    ||||||||| || ||||||||||||||||||||||| | | ||||||||    
T  11635054 catgcgaatggtacgccacatgagaggatccttgcatatgctccaccat 11635006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 5e-54; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 319 - 520
Target Start/End: Original strand, 4834590 - 4834805
Alignment:
Q  319 atatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaagg------------tatcttgttag 406  Q
    |||||||||||||||| ||  ||||||||||||||   ||||||||||||||||||||||||| |||||||||||||            |||||| ||||    
T  4834590 atatttagaataatgactacgaatgtggtgactcagtaagttctagaagttattatgactcaccttaatctagaaggatctaaaaggagtatcttattag 4834689  T
Q  407 gggatgatattgagtatgttagggtgcacttaggttattatgagtatgca--agtctatataagcattgtatgctttattatgagaatcaatgaaaaata 504  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||||  |||||||||||||||||||||| | ||||| |||||||||||||||||    
T  4834690 gggataatattgagtatgttagggtgcacttatcttattatgagtatgcataagtctatataagcattgtatgcctcattattagaatcaatgaaaaata 4834789  T
Q  505 taatgaattttctttc 520  Q
    ||||||||||||||||    
T  4834790 taatgaattttctttc 4834805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 323 - 520
Target Start/End: Original strand, 7415516 - 7415725
Alignment:
Q  323 ttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaagg----------tatcttgttaggggatg 412  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||  ||||||||||||  ||||| |||||||          ||||||||||||||||     
T  7415516 ttagaataatgagtactaatgtggtgactcagctagttctagaaaatattatgactcatcttaatttagaaggatctagaaattatcttgttaggggata 7415615  T
Q  413 atattgagtatgttagggtgcacttaggttattatgagtatgca--agtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatga 510  Q
    ||||||||||||||| ||||||||||  ||||||||||||  ||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7415616 atattgagtatgttatggtgcacttatcttattatgagtacacataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatga 7415715  T
Q  511 attttctttc 520  Q
    ||||||||||    
T  7415716 attttctttc 7415725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 323 - 520
Target Start/End: Original strand, 7426463 - 7426672
Alignment:
Q  323 ttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaagg----------tatcttgttaggggatg 412  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  |||||| |||||  ||||||||| |||          ||||||||||||||||     
T  7426463 ttagaataatgagtattaatgtggtgactcagctagttctagaaaatattataactcatcttaatctagtaggatctagaagttatcttgttaggggata 7426562  T
Q  413 atattgagtatgttagggtgcacttaggttattatgagtatgca--agtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatga 510  Q
    ||||||||||||||| ||||||||||  |||||| |||||  ||  ||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  7426563 atattgagtatgttatggtgcacttatcttattaagagtacacataagtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatga 7426662  T
Q  511 attttctttc 520  Q
    ||||||||||    
T  7426663 attttctttc 7426672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 323 - 520
Target Start/End: Original strand, 7422524 - 7422733
Alignment:
Q  323 ttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaagg----------tatcttgttaggggatg 412  Q
    ||||||||||||||| ||||||||||||| | ||||||||||||  |||||||| |||  ||||| |||||||          ||||||||||||||||     
T  7422524 ttagaataatgagtactaatgtggtgacttagctagttctagaaaatattatgaatcatcttaatttagaaggatctagaagttatcttgttaggggata 7422623  T
Q  413 atattgagtatgttagggtgcacttaggttattatgagtatgca--agtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatga 510  Q
    | ||||||||||||| ||||||||||  |||||| |||||  ||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7422624 acattgagtatgttatggtgcacttatcttattaagagtacacataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatga 7422723  T
Q  511 attttctttc 520  Q
    ||||||||||    
T  7422724 attttctttc 7422733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 400 - 514
Target Start/End: Original strand, 33242813 - 33242928
Alignment:
Q  400 ttgttaggggatgatattgagtatgttagggtgcacttaggttattatgagtatgca--agtctatataagcattgtatgctttattatgagaatcaatg 497  Q
    |||||||||||| ||||||||||||||||| ||||||||  ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||    
T  33242813 ttgttaggggataatattgagtatgttagg-tgcacttatcttattatgagtatgcacaagtctatataagcattgtatgccttattatgagaatcaatg 33242911  T
Q  498 aaaaatataatgaattt 514  Q
    |||||||||||||||||    
T  33242912 aaaaatataatgaattt 33242928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 393
Target Start/End: Original strand, 13886454 - 13886535
Alignment:
Q  312 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaa 393  Q
    |||||| ||| ||||||||| ||| | ||||||||||||||  ||||||||| || |||||||||||||| |||||||||||    
T  13886454 tgataggatagttagaataaggagcactaatgtggtgactctgctagttctataaattattatgactcaccttaatctagaa 13886535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 520
Target Start/End: Original strand, 13886589 - 13886627
Alignment:
Q  482 attatgagaatcaatgaaaaatataatgaattttctttc 520  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  13886589 attattagaatcaatgaaaaatataatgaattttctttc 13886627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 33242726 - 33242779
Alignment:
Q  323 ttagaataatgagtattaatgtggtgactcatctagttctagaagttattatga 376  Q
    ||||||||| ||| | |||| |||||||||| ||||||||||||||| ||||||    
T  33242726 ttagaataaggagcactaatatggtgactcagctagttctagaagttgttatga 33242779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 311 - 520
Target Start/End: Complemental strand, 18584171 - 18583950
Alignment:
Q  311 ttgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaagg----------tatct 400  Q
    ||||||| ||||||||||||| ||| |||||||||||| || | |||||| || ||||||||||||||||| |||||||||||||          ||| |    
T  18584171 ttgataggatatttagaataaggagcattaatgtggtggcttagctagttataaaagttattatgactcaccttaatctagaaggatctaaaaggtatat 18584072  T
Q  401 tgttaggggatgatattgagtatgttagggtgcacttaggttattatgagtatgca--agtctatataagcattgtatgctttattatgagaatcaatga 498  Q
    | ||||||||| |||||||||||||||||||||| |||   |||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  18584071 tattaggggataatattgagtatgttagggtgcagttatcgtattataagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatga 18583972  T
Q  499 aaaatataatgaattttctttc 520  Q
    |||||||| ||||||| |||||    
T  18583971 aaaatatactgaatttcctttc 18583950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 312 - 430
Target Start/End: Original strand, 13087573 - 13087700
Alignment:
Q  312 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacatta---------atctagaaggtatcttg 402  Q
    |||||| ||||| ||||||| ||| ||||||||||||||||  ||||||||||||||||||||||||||| |||         ||||||||||||| |||    
T  13087573 tgataggatattcagaataaggagcattaatgtggtgactcggctagttctagaagttattatgactcaccttaatctagacgatctagaaggtatattg 13087672  T
Q  403 ttaggggatgatattgagtatgttaggg 430  Q
    ||||||||| |||| |||||||||||||    
T  13087673 ttaggggataatatcgagtatgttaggg 13087700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 455 - 520
Target Start/End: Complemental strand, 23405604 - 23405539
Alignment:
Q  455 caagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttc 520  Q
    ||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23405604 caagtctatctaaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttc 23405539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 514
Target Start/End: Original strand, 13087701 - 13087759
Alignment:
Q  457 agtctatataagcattgtatgctttattatgagaatcaatg-aaaaatataatgaattt 514  Q
    |||||||||||| ||||||||| ||||||||||||| |||| ||||||| |||||||||    
T  13087701 agtctatataagtattgtatgccttattatgagaatgaatgaaaaaatacaatgaattt 13087759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 16955661 - 16955703
Alignment:
Q  144 aatagtgcgccacatgagaggatccttgcaaacgttccaccat 186  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  16955661 aatagtgcgccacatgagaggatccttgcaaatattccaccat 16955703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 21076261 - 21076204
Alignment:
Q  310 attgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaag 367  Q
    |||||||| ||  ||||||||| ||||| ||||||||||||||| |||||||||||||    
T  21076261 attgataggatggttagaataaggagtactaatgtggtgactcacctagttctagaag 21076204  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 520
Target Start/End: Original strand, 9893800 - 9893829
Alignment:
Q  491 atcaatgaaaaatataatgaattttctttc 520  Q
    ||||||||||||||||||||||||||||||    
T  9893800 atcaatgaaaaatataatgaattttctttc 9893829  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 393
Target Start/End: Complemental strand, 23405769 - 23405689
Alignment:
Q  313 gatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaa 393  Q
    ||||| |||| |||||||| || ||| ||| || ||||||  ||||||||||||| || |||||||||  |||||||||||    
T  23405769 gataggatatctagaataaggaatataaatatgatgactcccctagttctagaaggtagtatgactcatcttaatctagaa 23405689  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 476
Target Start/End: Original strand, 31211598 - 31211731
Alignment:
Q  355 ctagttctagaagttattatgactcacattaatctagaagg----------tatcttgttaggggatgatattgagtatgttagggtgcacttaggttat 444  Q
    ||||||||||||||| ||||||||||| |||||||||||||          ||| |||||||||||| |||||||||||||||| |||||||||  |||     
T  31211598 ctagttctagaagttgttatgactcactttaatctagaaggatttagaagatatattgttaggggataatattgagtatgttagagtgcacttatcttaa 31211697  T
Q  445 tatgagtatgc--aagtctatataagcattgtat 476  Q
    |||||||||||  ||||||||||||| |||||||    
T  31211698 tatgagtatgcataagtctatataagtattgtat 31211731  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 480 - 520
Target Start/End: Original strand, 31211859 - 31211899
Alignment:
Q  480 ttattatgagaatcaatgaaaaatataatgaattttctttc 520  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31211859 ttattatgagaatcaatgaaaaatataatgaattttctttc 31211899  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 455 - 514
Target Start/End: Complemental strand, 45327533 - 45327474
Alignment:
Q  455 caagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattt 514  Q
    |||||||||||||||||||||||  ||||||||||||  ||||||||||||||| |||||    
T  45327533 caagtctatataagcattgtatgtcttattatgagaaaaaatgaaaaatataataaattt 45327474  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 455 - 520
Target Start/End: Original strand, 44761988 - 44762053
Alignment:
Q  455 caagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttc 520  Q
    ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| ||||    
T  44761988 caagtctatataaacattgtatgccttattatgaaaatcaatgaaaaatataatgaattttttttc 44762053  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 455 - 520
Target Start/End: Original strand, 44765295 - 44765360
Alignment:
Q  455 caagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttc 520  Q
    ||||||||||||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||    
T  44765295 caagtctatataaacattgtattccttattatgaaaatcaatgaaaaatataatgaattttctttc 44765360  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 393
Target Start/End: Original strand, 44765129 - 44765210
Alignment:
Q  312 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaa 393  Q
    |||||| |||| |||||||| || ||| |||||||||||||  ||||||||||||| || |||||||||  |||||||||||    
T  44765129 tgataggatatctagaataaggaatataaatgtggtgactcccctagttctagaaggtagtatgactcatcttaatctagaa 44765210  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 312 - 393
Target Start/End: Original strand, 44761823 - 44761904
Alignment:
Q  312 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaa 393  Q
    |||||| |||| |||||||| || ||| |||||||||||||  ||||||||||||| || | |||||||  |||||||||||    
T  44761823 tgataggatatctagaataaggaatataaatgtggtgactcccctagttctagaaggtagtttgactcatcttaatctagaa 44761904  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 461 - 520
Target Start/End: Complemental strand, 14276685 - 14276625
Alignment:
Q  461 tatataagcattgta-tgctttattatgagaatcaatgaaaaatataatgaattttctttc 520  Q
    ||||||||||||||| ||||| || || | ||||||||||||||||||| ||||| |||||    
T  14276685 tatataagcattgtaatgcttcatgattaaaatcaatgaaaaatataatcaatttcctttc 14276625  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 393
Target Start/End: Original strand, 36050519 - 36050600
Alignment:
Q  312 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaa 393  Q
    |||||| ||||||||||||||||||| ||||||||||||||  ||||||||||||| || |||||||||  |||||||||||    
T  36050519 tgataggatatttagaataatgagtactaatgtggtgactcccctagttctagaaggtagtatgactcatcttaatctagaa 36050600  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 393
Target Start/End: Original strand, 36053778 - 36053859
Alignment:
Q  312 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaa 393  Q
    |||||| ||||||||||||||||||| ||||||||||||||  ||||||||||||| || |||||||||  |||||||||||    
T  36053778 tgataggatatttagaataatgagtactaatgtggtgactcccctagttctagaaggtagtatgactcatcttaatctagaa 36053859  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 474
Target Start/End: Complemental strand, 20441168 - 20441029
Alignment:
Q  346 gtgactcatctagttctagaagttattatgactcacattaatctagaag---------gtatcttgttaggggatgatattgagtatgttagggtgcact 436  Q
    ||||| || ||||||||||||||| ||||||||||| ||||| ||||||         |||| |||||| ||||| |||||||| |||| ||||||||||    
T  20441168 gtgacgcagctagttctagaagttgttatgactcaccttaatttagaagatctaaaaagtatattgttaagggataatattgagcatgtcagggtgcact 20441069  T
Q  437 taggttattatgagtatg--caagtctatataagcattgt 474  Q
    ||  ||||||||||||||  ||||||| || |||||||||    
T  20441068 tatcttattatgagtatgcacaagtctgtacaagcattgt 20441029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 514
Target Start/End: Original strand, 27387641 - 27387700
Alignment:
Q  455 caagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattt 514  Q
    |||||||||||||||||||||||| | ||||| || |  |||||||||||||||||||||    
T  27387641 caagtctatataagcattgtatgcctcattattagcaggaatgaaaaatataatgaattt 27387700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 520
Target Start/End: Complemental strand, 55322464 - 55322398
Alignment:
Q  455 caagtctatataagcattgtatgctttattatgagaatcaatgaaaaat-ataatgaattttctttc 520  Q
    |||||||||||||||||||||||| | ||||| || || |||||||||| ||||||||||| |||||    
T  55322464 caagtctatataagcattgtatgcctcattattaggatgaatgaaaaataataatgaatttcctttc 55322398  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 520
Target Start/End: Original strand, 24733642 - 24733702
Alignment:
Q  460 ctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttc 520  Q
    |||||||||||||||||| || || || ||||  ||||||||||||||||||||| |||||    
T  24733642 ctatataagcattgtatgtttcatgattagaaggaatgaaaaatataatgaatttcctttc 24733702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 55322638 - 55322549
Alignment:
Q  312 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaaggtatctt 401  Q
    |||||| |||| ||||||||||| ||| |||| |||| |  | ||||||||||||| || |||||||||  |||||||||| || |||||    
T  55322638 tgataggatatctagaataatgaatataaatgaggtggccgagctagttctagaaggtagtatgactcatcttaatctagatgggatctt 55322549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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