View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_17 (Length: 517)
Name: NF11856_low_17
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 33644866 - 33644370
Alignment:
| Q |
1 |
ggacaacaaattggtgtaaggtcttgtatcaacaatctcatcaggatcaataccagcaagagggttaccaacagggtttctaacattgtccattccactc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33644866 |
ggacaacaaattggtgtaaggtcttgtatcaacaatctcatcaggatcaataccagcaagagggttaccaacagggtttctaacattgtccattccactc |
33644767 |
T |
|
| Q |
101 |
tgcagacttgtcaagccaacctctgcaaggcccttaagaatttcagggacatcaggtaatgttacacctcgaatttgccaattctgtcttgttgtcacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33644766 |
tgcagacttgtcaagccaacctctgcaaggcccttaagaatttcagggacatcaggtaatgttacacctcgaatttgccaattctgtcttgttgtcacat |
33644667 |
T |
|
| Q |
201 |
cagcacatccatctttgccatannnnnnnatcacactcgccaagtatcttgtttgagcacttgttatgaccccatttggaagttttagtctcatcataaa |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
33644666 |
cagcacatccatctttgccatatttttttatcacactcgccaagtatcttgtttgagcacttgttgttaccccatttggaagttttagtctcatcataaa |
33644567 |
T |
|
| Q |
301 |
tctaccatctaattttcacaatggaaataaattagtacaacataactcaaatagttttttattctcactatgattaacaccgaatttctatgttcagatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33644566 |
tctaccatctaattttcacaatggaaataaattagtacaacataactc--atagttttttattctcactatgattaacaccgaatttctatgttcggatt |
33644469 |
T |
|
| Q |
401 |
gacggtgagtttgcataatcatggtgtgccgtataattttggtagaagttacacatagaagcttcaacacaatcatggtgccgtcatgattctgctaaa |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33644468 |
gacggtgagtttgcataatcatggtgtgccgtataattttggtagaagttacacatagaagcttcaacacagtcatggtgccgtcatgattctgctaaa |
33644370 |
T |
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