View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11856_low_19 (Length: 498)

Name: NF11856_low_19
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11856_low_19
NF11856_low_19
[»] chr8 (4 HSPs)
chr8 (1-476)||(14229612-14230088)
chr8 (304-465)||(14223102-14223266)
chr8 (323-477)||(14227304-14227453)
chr8 (441-480)||(31586217-31586256)
[»] chr6 (2 HSPs)
chr6 (226-281)||(10891657-10891712)
chr6 (217-283)||(19060374-19060440)
[»] chr4 (3 HSPs)
chr4 (232-281)||(53253541-53253590)
chr4 (438-476)||(47665812-47665850)
chr4 (437-469)||(39439289-39439321)
[»] chr7 (2 HSPs)
chr7 (233-281)||(41006836-41006884)
chr7 (219-277)||(25910273-25910331)
[»] chr5 (2 HSPs)
chr5 (441-480)||(28136283-28136322)
chr5 (441-469)||(22817199-22817227)
[»] chr3 (1 HSPs)
chr3 (217-286)||(20259250-20259318)
[»] chr2 (1 HSPs)
chr2 (226-283)||(14516681-14516738)


Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 14230088 - 14229612
Alignment:
Q  1 ttgagaaaatgacataattcaatatacatatgggtcggtgtcggacagtgaaatgtgttcgataccgggacacgactaattgaaggactgtttgtggttc 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||| ||||||||| |||||||||||||    
T  14230088 ttgagaaaatgacataattcaatatacatatgagtcggtgtcggacagtgacatgtgtccgataccaggacacgacaaattgaaggtctgtttgtggttc 14229989  T
Q  101 attgcacaaaacacactcagtatcaaaaacagctttcctactgatcagcaatgctcttgaacagcagccatggggtcgctatggcaaaatggcgtggtgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14229988 attgcacaaaacacactcagtatcaaaaacagctttcctactgatcagcaatgctcttgaacagcagccatggggtcgctatggcaaaatggcgtggtgg 14229889  T
Q  201 atattttaacaacaaacataagcaatttgtgaagggatgcctaccatggcggcgtcatagg-ccacaatggcatgtttatatagcagactattaattttc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||| |||||||    
T  14229888 atattttaacaacaaacataagcaatttgtgaagggatgcctaccatggcggcgacataggcccacaagggcatgtttatatagcagactatcaattttc 14229789  T
Q  300 taccatcgagaacagtttcggggaatcaaagagtgatcaaaacaaacctaaacctcgagaatcaaactacaaagacacattgtcctaataaaggagaaag 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14229788 taccatcgagaacagtttcggggaatcaaagagtgatcaaaacaaacctaaacctcgagaatcaaactacaaagacacattgtcctaataaaggagaaag 14229689  T
Q  400 tcaagtgaaagacacccaacaaccaacaaaatttatattatctctatagcactgacacttctgatcgaaggcatgtc 476  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14229688 tcaagtgaaagatacccaacaaccatcaaaatttatattatctctatagcactgacacttctgatcgaaggcatgtc 14229612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 304 - 465
Target Start/End: Complemental strand, 14223266 - 14223102
Alignment:
Q  304 atcgagaacagtttcggggaatcaaagagtgatcaaaacaaacctaaacctcgagaatcaaactacaaagacacattgtcctaataaaggagaaagtcaa 403  Q
    ||||| |||| ||| ||| |||||||  |||||| ||  ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  14223266 atcgacaacaattttgggcaatcaaattgtgatctaagaaaacctagacctcaagaatcaaactacaaagacacattgtcctgataaaggagaaagtcaa 14223167  T
Q  404 gtgaaagacacccaacaaccaacaaaat---ttatattatctctatagcactgacacttctgatc 465  Q
     |||||| || ||||||| || ||||||   | |||| ||||||||||||| |||||||||||||    
T  14223166 atgaaaggcatccaacaatcatcaaaatgaataatatcatctctatagcaccgacacttctgatc 14223102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 323 - 477
Target Start/End: Complemental strand, 14227453 - 14227304
Alignment:
Q  323 aatcaaagagtgatcaaaacaaacctaaacctcgagaatcaaactacaaagacacattgtcctaataaaggagaaagtcaagtgaaagacacccaacaac 422  Q
    |||||||| |||||| ||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| || |||||||||||||| || ||| |||     
T  14227453 aatcaaagtgtgatctaagaaaacctaaacctcaagaatcaaactacaaagacacattgtcttaataaagaagtaagtcaagtgaaaggcatccagcaat 14227354  T
Q  423 caacaaaatttatattatctctatagcactgacacttctgatcgaaggcatgtct 477  Q
    || ||||||  |||     |||||||||| ||||||||| ||||||| |||||||    
T  14227353 catcaaaatgaata-----tctatagcaccgacacttctaatcgaagtcatgtct 14227304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 480
Target Start/End: Original strand, 31586217 - 31586256
Alignment:
Q  441 ctctatagcactgacacttctgatcgaaggcatgtctggt 480  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  31586217 ctctatagcactgacacttctgatcaaagccatgtctggt 31586256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 10891657 - 10891712
Alignment:
Q  226 tttgtgaagggatgcctaccatggcggcgtcataggccacaatggcatgtttatat 281  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||| | |||||||    
T  10891657 tttgtgaatggatgcctgtcatggcggcgtcataggccacaatggcgtatttatat 10891712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 19060440 - 19060374
Alignment:
Q  217 cataagcaatttgtgaagggatgcctaccatggcggcgtcataggccacaatggcatgtttatatag 283  Q
    |||| |||| ||||||||||||| || ||||||| | | ||||||||||||||| ||||||| ||||    
T  19060440 cataggcaacttgtgaagggatggctgccatggcagtgccataggccacaatggtatgtttacatag 19060374  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 53253541 - 53253590
Alignment:
Q  232 aagggatgcctaccatggcggcgtcataggccacaatggcatgtttatat 281  Q
    |||||||| | |||||||||||| |||||||||||||||||| |||||||    
T  53253541 aagggatgtccaccatggcggcgccataggccacaatggcatttttatat 53253590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 438 - 476
Target Start/End: Original strand, 47665812 - 47665850
Alignment:
Q  438 tatctctatagcactgacacttctgatcgaaggcatgtc 476  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  47665812 tatctctatagcactgacacttctggtggaaggcatgtc 47665850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 469
Target Start/End: Complemental strand, 39439321 - 39439289
Alignment:
Q  437 ttatctctatagcactgacacttctgatcgaag 469  Q
    |||||||||||||||| ||||||||||||||||    
T  39439321 ttatctctatagcacttacacttctgatcgaag 39439289  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 41006836 - 41006884
Alignment:
Q  233 agggatgcctaccatggcggcgtcataggccacaatggcatgtttatat 281  Q
    |||||||||| |||||| || | ||||||||||||||||||||||||||    
T  41006836 agggatgcctgccatggtggtgccataggccacaatggcatgtttatat 41006884  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 25910331 - 25910273
Alignment:
Q  219 taagcaatttgtgaagggatgcctaccatggcggcgtcataggccacaatggcatgttt 277  Q
    |||||||||||||||||||||||  |||||| |||| |||| ||| || ||||||||||    
T  25910331 taagcaatttgtgaagggatgcccgccatggtggcgccataagccgcagtggcatgttt 25910273  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 480
Target Start/End: Complemental strand, 28136322 - 28136283
Alignment:
Q  441 ctctatagcactgacacttctgatcgaaggcatgtctggt 480  Q
    ||||||||||||||||||||||||||||| | ||||||||    
T  28136322 ctctatagcactgacacttctgatcgaagacgtgtctggt 28136283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 469
Target Start/End: Complemental strand, 22817227 - 22817199
Alignment:
Q  441 ctctatagcactgacacttctgatcgaag 469  Q
    |||||||||||||||||||||||||||||    
T  22817227 ctctatagcactgacacttctgatcgaag 22817199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 20259250 - 20259318
Alignment:
Q  217 cataagcaatttgtgaagggatgcctaccatggcggcgtcataggccacaatggcatgtttatatagcag 286  Q
    |||| |||||||||||||||||  | ||||||| |||| |||||| | ||||||||||||||||| ||||    
T  20259250 catatgcaatttgtgaagggatctc-accatggtggcgccataggtcgcaatggcatgtttatatggcag 20259318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 283
Target Start/End: Complemental strand, 14516738 - 14516681
Alignment:
Q  226 tttgtgaagggatgcctaccatggcggcgtcataggccacaatggcatgtttatatag 283  Q
    |||||||||||||||| ||||||| |||| |||| ||  ||||||| |||||||||||    
T  14516738 tttgtgaagggatgcccaccatggtggcgccataagctgcaatggcgtgtttatatag 14516681  T

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