View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_20 (Length: 498)
Name: NF11856_low_20
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 5 - 488
Target Start/End: Original strand, 1836775 - 1837267
Alignment:
| Q |
5 |
caatatcaagtaccaactaacatggacataattatatttcgataaaaactatacttaatttgcatgaacaatgtcttcaagtggtgctgctagttctgca |
104 |
Q |
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| T |
1836775 |
caatatcaagtaccaactaacattgacataaatatatttcgataaaaactatacttaatttgcatgaacaatgtcttcaagtggtgctgctagttctgca |
1836874 |
T |
|
| Q |
105 |
tacagaggagtccgtaagagaaaatggggtaaatgggtttccgaaattcgtgagcccggcaccaaaacaagaatctggttaggaagtttcgagacaccag |
204 |
Q |
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| T |
1836875 |
tacagaggagtccgtaagagaaaatggggtaaatgggtttccgaaattcgcgagcccggcaccaaaacaagaatctggttaggaagtttcgagacaccag |
1836974 |
T |
|
| Q |
205 |
agatggcagcggctgcatacgacgtagctgccttgcatttcaggggacgtgaagccaggctcaatttcccggaacttgcaaacactcttcctcgtcctct |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1836975 |
agatggcagcggctgcatacgacgtagctgccttgcatttcaggggacgtgaagccaggctcaatttcccggaacttgcaaacactcttcctcgtcctct |
1837074 |
T |
|
| Q |
305 |
aagcaacaatgctgaccacattcgaatggcagcacatgaagccgccttgaggttgagag------ccaacatgttggcgccaccagataacaacagtgga |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
1837075 |
aagcaacaatgctgaccacattcgaatggcagcacatgaagccgccttgaggttgagagccaacaccaacatgttggcgccactagataacaacagtgga |
1837174 |
T |
|
| Q |
399 |
acag---gctcagccagttccactgatgcggtggcgcctctgagggtcagactctctccaagtcaaattcaagcgattaatgattcgcctatg |
488 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1837175 |
acaggctgctcagccagttccactgatgcggtggcgcctctgagggtcagactctctccaagtcaaattcaagcgattaacgattcgcctatg |
1837267 |
T |
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