View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_22 (Length: 469)
Name: NF11856_low_22
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 29355303 - 29355438
Alignment:
| Q |
1 |
ttttcaaacaaacttccaatgtcccttccaattcgactattaacatagtcgacaatcgtcattaaagttaataaccgaattggaagggacgttgaaggtt |
100 |
Q |
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| T |
29355303 |
ttttcaaacaaacttccaatgtcccttccaattcgcctattaacatagtcgacaatcgtcattaaagttaataaccgaattggaagggacgttgaaggtt |
29355402 |
T |
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| Q |
101 |
tgggcttgcggttgtattggtagtggtgggaagttt |
136 |
Q |
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| T |
29355403 |
tgggcttgtggttgtattggtagtggtgggaagttt |
29355438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 208 - 306
Target Start/End: Original strand, 29355510 - 29355608
Alignment:
| Q |
208 |
tgcgctttcaattgagggtaagtaatctatctatatataggttcatagtaggatgtctccatctcagttggagccatgttgaagataaaattttcagcc |
306 |
Q |
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| T |
29355510 |
tgcgctttcaattgagggtaagtaatctatttatatataggttcatggtaggatggctccatctcagttggagccatgttgaagataaaattttcagcc |
29355608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 451
Target Start/End: Original strand, 29355649 - 29355749
Alignment:
| Q |
351 |
catctcagttggagccatgatgaaggatgtataaattaatttgctnnnnnnncgaagaagaatnnnnnnnggtagtaggatggtgccatctgagagagag |
450 |
Q |
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| T |
29355649 |
catctcagttggagccatgatgaaggatgtataaattaatttgctaaaaaaccgaagaagaataaaaaaaggtagtaggatggcgccatctgagagagag |
29355748 |
T |
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| Q |
451 |
c |
451 |
Q |
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| T |
29355749 |
c |
29355749 |
T |
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