View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11856_low_23 (Length: 460)
Name: NF11856_low_23
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_23 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
| [»] scaffold0078 (5 HSPs) |
| | |
|
| [»] scaffold0184 (3 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 432; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 8294762 - 8294319
Alignment:
| Q |
1 |
atcaaccaccaagttctgttctttttgtctcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtgg |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8294762 |
atcaacaaccaagttctgttctttttgtctcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtgg |
8294663 |
T |
|
| Q |
101 |
tcacaaattcttgtgggtcgtgagagctccaagtaaaaattctagttctgcctattttagtggacaaaacaatgatccattagagtatttaccaaaaggt |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8294662 |
tcacaaattcttgtgggttgtgagagctccaagtaaaaattctagttctgcctattttagtggacaaaacaatgatccattagagtatttaccaaatggt |
8294563 |
T |
|
| Q |
201 |
tttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8294562 |
tttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcatt |
8294463 |
T |
|
| Q |
301 |
gtggttggagttcaactttggagagtgtggttaacggcgtgccgttgattgcatggccattgtttgcagagcaaaggatgaatgcaaaattactcactga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8294462 |
gtggttggagttcaactttggagagtgtggttaacggcgtgccgttgattgcatggccattgtttgcagagcaaaggatgaatgcaaaattactcactga |
8294363 |
T |
|
| Q |
401 |
tgtactcaaagtggcagtgaggccaaaggttgatgatgaaactg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8294362 |
tgtactcaaagtggcagtgaggccaaaggttgatgatgaaactg |
8294319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 33256993 - 33257436
Alignment:
| Q |
1 |
atcaaccaccaagttctgttctttttgtctcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtgg |
100 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33256993 |
atcagccaccaagttctgttatttttgtctcctttggaagtggtggaacactctctcaagatcaactcaatgagttagcttttggtctagaattgagtgg |
33257092 |
T |
|
| Q |
101 |
tcacaaattcttgtgggtcgtgagagctccaagtaaaaattctagttctgcctattttagtggacaaaacaatgatccattagagtatttaccaaaaggt |
200 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
33257093 |
tcacaagttcttgtgggttgtgagagctccaagtaaacattctagttctgcttattttaatggacaaaacaatgaaccattagagtatttaccaaacggt |
33257192 |
T |
|
| Q |
201 |
tttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcatt |
300 |
Q |
| |
|
||| | |||||||||||||| || ||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33257193 |
tttgtcgaaagaacaaaagagaagggattagttgttacatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcatt |
33257292 |
T |
|
| Q |
301 |
gtggttggagttcaactttggagagtgtggttaacggcgtgccgttgattgcatggccattgtttgcagagcaaaggatgaatgcaaaattactcactga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33257293 |
gtggttggagttcaactttggagagtgtggttaacggcgttccgttgattgcatggccattgtttgcagagcaaagaatgaatgcaaaattactcactga |
33257392 |
T |
|
| Q |
401 |
tgtactcaaagtggcagtgaggccaaaggttgatgatgaaactg |
444 |
Q |
| |
|
||| || ||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
33257393 |
tgtgctaaaagtggcagtaaggccaaaggttgatggtgaaactg |
33257436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 845147 - 845019
Alignment:
| Q |
188 |
tttaccaaaaggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtggg |
287 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || || |||||||| ||| |||||||||||| |||| |||||||||||| | |||||||||||| |
|
|
| T |
845147 |
tttaccaaatggttttttggaaagaacaaaagggaaaggtttagtagttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtggg |
845048 |
T |
|
| Q |
288 |
tttttaagtcattgtggttggagttcaac |
316 |
Q |
| |
|
||||||| |||||||||||||| |||||| |
|
|
| T |
845047 |
tttttaactcattgtggttggaattcaac |
845019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 229 - 316
Target Start/End: Complemental strand, 870390 - 870303
Alignment:
| Q |
229 |
tagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcattgtggttggagttcaac |
316 |
Q |
| |
|
|||||||| ||| |||||||||||| |||| |||||||||||| | ||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
870390 |
tagtagttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaac |
870303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 1111 - 1554
Alignment:
| Q |
1 |
atcaaccaccaagttctgttctttttgtctcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtgg |
100 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1111 |
atcagccaccaagttctgttatttttgtctcctttggaagtggtggaacactctctcaagatcaactcaatgagttagcttttggtctagaattgagtgg |
1210 |
T |
|
| Q |
101 |
tcacaaattcttgtgggtcgtgagagctccaagtaaaaattctagttctgcctattttagtggacaaaacaatgatccattagagtatttaccaaaaggt |
200 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
1211 |
tcacaagttcttgtgggttgtgagagctccaagtaaacattctagttctgcttattttaatggacaaaacaatgaaccattagagtatttaccaaacggt |
1310 |
T |
|
| Q |
201 |
tttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcatt |
300 |
Q |
| |
|
||| | |||||||||||||| || ||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1311 |
tttgtcgaaagaacaaaagagaagggattagttgttacatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcatt |
1410 |
T |
|
| Q |
301 |
gtggttggagttcaactttggagagtgtggttaacggcgtgccgttgattgcatggccattgtttgcagagcaaaggatgaatgcaaaattactcactga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1411 |
gtggttggagttcaactttggagagtgtggttaacggcgtaccgttgattgcatggccattgtttgcagagcaaagaatgaatgcaaaattactcactga |
1510 |
T |
|
| Q |
401 |
tgtactcaaagtggcagtgaggccaaaggttgatgatgaaactg |
444 |
Q |
| |
|
||| || ||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
1511 |
tgtgctaaaagtggcagtaaggccaaaggttgatggtgaaactg |
1554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 894810 - 894370
Alignment:
| Q |
1 |
atcaaccaccaagttctgttctttttgtctcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtgg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| | |||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
894810 |
atcaaccaccaagttctgttctttatgtatgttttgggagtggtggaacagtttctcatgaacaactcaatgagttagcatttggactagaattgagtgg |
894711 |
T |
|
| Q |
101 |
tcacaaattcttgtgggtcgtgagagctccaagtaaaaattctagttctgcctattttagtggacaaaacaatgatccattagagtatttaccaaaaggt |
200 |
Q |
| |
|
| | |||||||||||||| || |||| |||||||||| | ||| ||||| |||||| |||| |||| ||||||||||||| |||||||||| ||| |
|
|
| T |
894710 |
taagaaattcttgtgggttgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagattatttaccaagtggt |
894611 |
T |
|
| Q |
201 |
tttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcatt |
300 |
Q |
| |
|
||| |||||||||| |||||||||||| | || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
894610 |
tttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcatt |
894511 |
T |
|
| Q |
301 |
gtggttggagttcaactttggagagtgtggttaacggcgtgccgttgattgcatggccattgtttgcagagcaaaggatgaatgcaaaattactcactga |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || ||||| ||||||||||||| | ||||| || |||||||||||||| |||||| | || || |
|
|
| T |
894510 |
gtggttggggttcaactttggagagtgtggttaatggtgtgcctatgattgcatggcctctatttgctgaacaaaggatgaatgccaaattattgacaga |
894411 |
T |
|
| Q |
401 |
tgtactcaaagtggcagtgaggccaaaggttgatgatgaaa |
441 |
Q |
| |
|
|| ||||| ||||| |||||||||||| |||||||||||| |
|
|
| T |
894410 |
tgagctcaaggtggctgtgaggccaaagattgatgatgaaa |
894370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 905833 - 906273
Alignment:
| Q |
1 |
atcaaccaccaagttctgttctttttgtctcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtgg |
100 |
Q |
| |
|
||||||| |||| ||||||||||| ||| | |||||| |||||||||||| | ||||| || ||||| || |||||||| ||||| ||||||||||||| |
|
|
| T |
905833 |
atcaacctccaaattctgttctttatgtatgttttgggagtggtggaacagtttctcatgaacaactgaatgagttagcatttggattagaattgagtgg |
905932 |
T |
|
| Q |
101 |
tcacaaattcttgtgggtcgtgagagctccaagtaaaaattctagttctgcctattttagtggacaaaacaatgatccattagagtatttaccaaaaggt |
200 |
Q |
| |
|
| | || ||||||||||| || |||| |||||||||| || || ||||| |||||| |||| ||| ||||||||||||||||||||||||| ||| |
|
|
| T |
905933 |
taaaaagttcttgtgggttgttagagttccaagtaaagatgttaactctgcttattttgttggagcaaaagatgatccattagagtatttaccaaatggt |
906032 |
T |
|
| Q |
201 |
tttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcatt |
300 |
Q |
| |
|
|| |||||||||| |||||||||||| | || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
906033 |
ttcttggaaagaaacaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttgagtcatt |
906132 |
T |
|
| Q |
301 |
gtggttggagttcaactttggagagtgtggttaacggcgtgccgttgattgcatggccattgtttgcagagcaaaggatgaatgcaaaattactcactga |
400 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||| || ||||| ||||||||||||| | |||||||| |||||||||||||| | |||| | || || |
|
|
| T |
906133 |
gtggttggggttcaactttggagactgtggttaatggggtgcctgtgattgcatggcctctatttgcagaacaaaggatgaatgcgagattattgacaga |
906232 |
T |
|
| Q |
401 |
tgtactcaaagtggcagtgaggccaaaggttgatgatgaaa |
441 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
906233 |
tgtgctcaaagtggctgtgaggccaaaggttgatgatgaaa |
906273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 28 - 440
Target Start/End: Original strand, 23423567 - 23423985
Alignment:
| Q |
28 |
tctcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtggtcacaaattcttgtgggtcgtgagagc |
127 |
Q |
| |
|
|||||||||| ||||||||| ||||| |||| || ||| |||| ||| |||||||||| |||||| |||||| ||| || |||||||| | |||| |
|
|
| T |
23423567 |
tctcttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggttattagagt |
23423666 |
T |
|
| Q |
128 |
tccaagtaaaaattctagttctgcctattttagtgga----caaaaca--atgatccattagagtatttaccaaaaggttttttggaaagaacaaaagaa |
221 |
Q |
| |
|
||||| ||| | || | |||||| |||||||||||| ||||| | ||||||||||| | ||||||||| |||||| |||||||| || ||||| |
|
|
| T |
23423667 |
tccaaataagcactcaaattctgcttattttagtggatcttcaaaaaaggatgatccattaaattatttaccattaggtttcttggaaaggactaaagat |
23423766 |
T |
|
| Q |
222 |
aatggactagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcattgtggttggagttcaactttgg |
321 |
Q |
| |
|
| || | || ||| |||||||||| ||||||||||| |||||| ||||| | |||| |||||| ||||| | |||||||||||||||||||| ||| | |
|
|
| T |
23423767 |
caaggcttggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttag |
23423866 |
T |
|
| Q |
322 |
agagtgtggttaacggcgtgccgttgattgcatggccattgtttgcagagcaaaggatgaatgcaaaattactcactgatgtactcaaagtggcagtgag |
421 |
Q |
| |
|
|| || | ||| | || ||||| ||||||| |||||||||||||| ||||| || ||||| ||| | |||||| ||||| |||||||||||||||| |
|
|
| T |
23423867 |
agggtttagtttatggtgtgcctatgattgcttggccattgtttgctgagcagagaatgaacgcagcaacactcaccgatgttttcaaagtggcagtgag |
23423966 |
T |
|
| Q |
422 |
gccaaaggttgatgatgaa |
440 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
23423967 |
gccaaaaattgatgatgaa |
23423985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 172 - 440
Target Start/End: Complemental strand, 548887 - 548619
Alignment:
| Q |
172 |
atgatccattagagtatttaccaaaaggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtca |
271 |
Q |
| |
|
||||||||||| | ||||||||| |||||| |||||||| || ||||| | || | || ||| |||||||||| ||||||||||| |||||| |||| |
|
|
| T |
548887 |
atgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtca |
548788 |
T |
|
| Q |
272 |
tggatcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggttaacggcgtgccgttgattgcatggccattgtttgcagag |
371 |
Q |
| |
|
| | |||| |||||| ||||| | |||||||||||||||||||| ||| ||| || | ||| | || ||||| ||||||| |||||||||||||| ||| |
|
|
| T |
548787 |
tagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatgattgcttggccattgtttgctgag |
548688 |
T |
|
| Q |
372 |
caaaggatgaatgcaaaattactcactgatgtactcaaagtggcagtgaggccaaaggttgatgatgaa |
440 |
Q |
| |
|
|| || ||||| || || |||||| ||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
548687 |
cagagaatgaacgctgcatcactcaccgatgttttcaaagtggcagtgaggccaaaaattgatgatgaa |
548619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 385
Target Start/End: Complemental strand, 10201936 - 10201827
Alignment:
| Q |
276 |
tcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggttaacggcgtgccgttgattgcatggccattgtttgcagagcaaa |
375 |
Q |
| |
|
|||||||| |||||| | |||||||||||||||| ||||||| | ||||||||||| || || ||||| ||||||||||||||| | | ||| ||||||| |
|
|
| T |
10201936 |
tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaaa |
10201837 |
T |
|
| Q |
376 |
ggatgaatgc |
385 |
Q |
| |
|
||||||||| |
|
|
| T |
10201836 |
agatgaatgc |
10201827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 385
Target Start/End: Complemental strand, 10209009 - 10208900
Alignment:
| Q |
276 |
tcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggttaacggcgtgccgttgattgcatggccattgtttgcagagcaaa |
375 |
Q |
| |
|
|||||||| |||||| | |||||||||||||||| ||||||| | ||||||||||| || || ||||| ||||||||||||||| | | ||| ||||||| |
|
|
| T |
10209009 |
tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaaa |
10208910 |
T |
|
| Q |
376 |
ggatgaatgc |
385 |
Q |
| |
|
||||||||| |
|
|
| T |
10208909 |
agatgaatgc |
10208900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 566377 - 566303
Alignment:
| Q |
242 |
atgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcattgtggttggagttcaac |
316 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||| ||| |||||| |||||| ||||| || |||||| |
|
|
| T |
566377 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggatttttatgtcattttggttcgaattcaac |
566303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 560495 - 560446
Alignment:
| Q |
277 |
caattggtgggtttttaagtcattgtggttggagttcaactttggagagt |
326 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
560495 |
caattggtgcatttttaactcattgtggttggaattcaattttggagagt |
560446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 1963282 - 1963387
Alignment:
| Q |
30 |
tcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtggtcacaaattcttgtgggtcgtgagagctc |
129 |
Q |
| |
|
|||||||| |||||||| ||||| || ||||| ||| | | ||||| ||||| ||| | ||||||||| ||| |||||||| ||||| || ||||||| |
|
|
| T |
1963282 |
tcttttggtagtggtggcacactttcgcaagaacaaattgatgagttggctttgggtttggaattgagtaatcataaattcttatgggttgtaagagctc |
1963381 |
T |
|
| Q |
130 |
caagta |
135 |
Q |
| |
|
|||||| |
|
|
| T |
1963382 |
caagta |
1963387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 549061 - 548925
Alignment:
| Q |
28 |
tctcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtggtcacaaattcttgtgggtcgtgagagc |
127 |
Q |
| |
|
|||||||||| ||||||||| ||||| |||| || ||| |||| ||| |||||||||| |||||| |||||| ||| || |||||||| | ||| |
|
|
| T |
549061 |
tctcttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggttattagaat |
548962 |
T |
|
| Q |
128 |
tccaagtaaaaattctagttctgcctattttagtgga |
164 |
Q |
| |
|
||||| ||| | || |||||||| |||||||||||| |
|
|
| T |
548961 |
tccaaataagcactcaagttctgcttattttagtgga |
548925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 22071 - 22175
Alignment:
| Q |
30 |
tcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtggtcacaaattcttgtgggtcgtgagagctc |
129 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||| |||| ||| ||||||||||| | |||||||||||||| | |||| | ||||| ||||||| | |
|
|
| T |
22071 |
tcttttggaagtggtggaacactttctcaaacacaaatcaatgagctagcttttggtttggaattgagtggtcaaagattcatttgggtattgagagcac |
22170 |
T |
|
| Q |
130 |
caagt |
134 |
Q |
| |
|
||||| |
|
|
| T |
22171 |
caagt |
22175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 57333 - 57464
Alignment:
| Q |
3 |
caaccaccaagttctgttctttttgtctcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtggtc |
102 |
Q |
| |
|
||||||| || ||||||| | | ||| ||||||||||||||||||||||| |||||| ||| | || || ||||||||||| | ||||||||||||| |
|
|
| T |
57333 |
caaccacaaaattctgttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaataaatgaactagcttttggtttggaattgagtggtc |
57432 |
T |
|
| Q |
103 |
acaaattcttgtgggtcgtgagagctccaagt |
134 |
Q |
| |
|
| | |||| | ||||| |||||||| |||||| |
|
|
| T |
57433 |
aaagattcatttgggttgtgagagcaccaagt |
57464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 188 - 326
Target Start/End: Original strand, 57518 - 57656
Alignment:
| Q |
188 |
tttaccaaaaggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtggg |
287 |
Q |
| |
|
|||||| | ||| |||||||||||||| |||||||| || | | | |||||||||||||| |||||||| || ||| ||| | ||| ||||||| |
|
|
| T |
57518 |
tttacctatagggtttttggaaagaaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagttcagttggtgga |
57617 |
T |
|
| Q |
288 |
tttttaagtcattgtggttggagttcaactttggagagt |
326 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
57618 |
tttttaagtcattgtggttggaattcagttttggagagt |
57656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 60892 - 60981
Alignment:
| Q |
14 |
ttctgttctttttgtctcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtggtca |
103 |
Q |
| |
|
||||||| | ||||| || |||||||||||||||||||| |||||||| ||| | || |||||||||||||| | ||||| |||||||| |
|
|
| T |
60892 |
ttctgttttgtttgtttcatttggaagtggtggaacactttctcaagaacaagttaatgagttagcttttgggttggaattaagtggtca |
60981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 3067 - 3109
Alignment:
| Q |
280 |
ttggtgggtttttaagtcattgtggttggagttcaactttgga |
322 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
3067 |
ttggtggatttttaagtcattgtggttggaattcgactttgga |
3109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 15511 - 15380
Alignment:
| Q |
3 |
caaccaccaagttctgttctttttgtctcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtggtc |
102 |
Q |
| |
|
||||||| || ||||||| | | ||| ||||||||||||||||||||||| |||||| ||| | || || ||||||||||| | ||||||||||||| |
|
|
| T |
15511 |
caaccacaaaattctgttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaataaatgaactagcttttggtttggaattgagtggtc |
15412 |
T |
|
| Q |
103 |
acaaattcttgtgggtcgtgagagctccaagt |
134 |
Q |
| |
|
| | |||| | ||||| |||||||| |||||| |
|
|
| T |
15411 |
aaagattcatttgggttgtgagagcaccaagt |
15380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 188 - 326
Target Start/End: Complemental strand, 15326 - 15188
Alignment:
| Q |
188 |
tttaccaaaaggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtggg |
287 |
Q |
| |
|
|||||| | ||| |||||||||||||| |||||||| || | | | |||||||||||||| |||||||| || ||| ||| | ||| ||||||| |
|
|
| T |
15326 |
tttacctatagggtttttggaaagaaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagttcagttggtgga |
15227 |
T |
|
| Q |
288 |
tttttaagtcattgtggttggagttcaactttggagagt |
326 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
15226 |
tttttaagtcattgtggttggaattcagttttggagagt |
15188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 11952 - 11863
Alignment:
| Q |
14 |
ttctgttctttttgtctcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtggtca |
103 |
Q |
| |
|
||||||| | ||||| || |||||||||||||||||||| |||||||| ||| | || |||||||||||||| | ||||| |||||||| |
|
|
| T |
11952 |
ttctgttttgtttgtttcatttggaagtggtggaacactttctcaagaacaagttaatgagttagcttttgggttggaattaagtggtca |
11863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 16490658 - 16490744
Alignment:
| Q |
15 |
tctgttctttttgtctcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtggt |
101 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||||||||| || ||||| ||| | || |||||||||| ||| |||||||||||||| |
|
|
| T |
16490658 |
tctgttttgtttgtgtcttttggaagtggtggaacactttcacaagagcaagtgaatgagttagcttatgggttagaattgagtggt |
16490744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 16566723 - 16566765
Alignment:
| Q |
280 |
ttggtgggtttttaagtcattgtggttggagttcaactttgga |
322 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
16566723 |
ttggtggatttttaagtcattgtggttggaattcgactttgga |
16566765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 16598939 - 16598897
Alignment:
| Q |
280 |
ttggtgggtttttaagtcattgtggttggagttcaactttgga |
322 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
16598939 |
ttggtggatttttaagtcattgtggttggaattcgactttgga |
16598897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 48398540 - 48398584
Alignment:
| Q |
270 |
catggatcaattggtgggtttttaagtcattgtggttggagttca |
314 |
Q |
| |
|
||||| |||| |||||||||||||| |||||||||||||| |||| |
|
|
| T |
48398540 |
catgggtcaactggtgggtttttaactcattgtggttggaattca |
48398584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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