View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11856_low_24 (Length: 456)

Name: NF11856_low_24
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11856_low_24
NF11856_low_24
[»] chr3 (4 HSPs)
chr3 (19-314)||(42912063-42912358)
chr3 (336-410)||(10105168-10105242)
chr3 (336-410)||(10216315-10216389)
chr3 (336-410)||(10225944-10226019)
[»] chr8 (1 HSPs)
chr8 (312-444)||(17652727-17652859)
[»] chr4 (1 HSPs)
chr4 (312-444)||(18053957-18054089)
[»] chr5 (2 HSPs)
chr5 (336-410)||(26795787-26795861)
chr5 (336-410)||(26806851-26806925)
[»] scaffold0002 (1 HSPs)
scaffold0002 (416-444)||(264245-264273)


Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 42912063 - 42912358
Alignment:
Q  19 gcaatgcatgccggattcttgtcattggatatatctcacagtcacagtatacttaactttgcatctatctgtttaagaaaataaaacctcatcaatcttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42912063 gcaatgcatgccggattcttgtcattggatatatctcacagtcacagtatatttaactttgcatctatctgtttaagaaaataaaacctcatcaatcttc 42912162  T
Q  119 acaagagtggaagcacttggcccttctttgaggttgacatttttataatgagttcaattggatacgtaattagtatttaaaaaagttgaacaaaatgatc 218  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42912163 acaagagtagaagcacttggcccttctttgaggttgacgtttttataatgagttcaattggatacgtaattagtatttaaaaaagttgaacaaaatgata 42912262  T
Q  219 ccaattgactttggttgaatattacctctnnnnnnncttaattatttagttaacggttccatctcttaaccgatgctccatccggtcgctattata 314  Q
    |||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||    
T  42912263 ccaattgactttggttgaatattacctctaaaaaaacttaattatttagttcacggttccatctcttaaccgatgctccatctagtcgctattata 42912358  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 10105168 - 10105242
Alignment:
Q  336 taaaacttttgattagactgttatcccattatttaatatttaagatttaagtgtcattctcaatctaagaagaat 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10105168 taaaacttttgattagactgttatcccattatttaatatttaagatttaagtgtcattctcaatctaagaagaat 10105242  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 10216315 - 10216389
Alignment:
Q  336 taaaacttttgattagactgttatcccattatttaatatttaagatttaagtgtcattctcaatctaagaagaat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10216315 taaaacttttgattagactgttatcccattatttaatatttaagatttaggtgtcattctcaatctaagaagaat 10216389  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 10225944 - 10226019
Alignment:
Q  336 taaaacttttgattagactgttatcccattatttaatatttaaga-tttaagtgtcattctcaatctaagaagaat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  10225944 taaaacttttgattagactgttatcccattatttaatatttaagattttaaatgtcattctcaatctaagaagaat 10226019  T

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Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 312 - 444
Target Start/End: Complemental strand, 17652859 - 17652727
Alignment:
Q  312 atactaattcacagtagatcaaattaaaacttttgattagactgttatcccattatttaatatttaagatttaagtgtcattctcaatctaagaagaatt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17652859 atactaattcacagtagatcaaattaaaacttttgattagactgttatcccattatttaatatttaagatttaagtgtcattctcaatctaagaagaatc 17652760  T
Q  412 gggcggaatcacgctctgtaggatttgaaccta 444  Q
    |||||||||||||||||||||||||||||||||    
T  17652759 gggcggaatcacgctctgtaggatttgaaccta 17652727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 312 - 444
Target Start/End: Complemental strand, 18054089 - 18053957
Alignment:
Q  312 atactaattcacagtagatcaaattaaaacttttgattagactgttatcccattatttaatatttaagatttaagtgtcattctcaatctaagaagaatt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18054089 atactaattcacagtagatcaaattaaaacttttgattagactgttatcccattatttaatatttaagatttaagtgtcattctcaatctaagaagaatc 18053990  T
Q  412 gggcggaatcacgctctgtaggatttgaaccta 444  Q
    ||| |||||||||||||||||||||||||||||    
T  18053989 ggggggaatcacgctctgtaggatttgaaccta 18053957  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 26795787 - 26795861
Alignment:
Q  336 taaaacttttgattagactgttatcccattatttaatatttaagatttaagtgtcattctcaatctaagaagaat 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26795787 taaaacttttgattagactgttatcccattatttaatatttaagatttaagtgtcattctcaatctaagaagaat 26795861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 26806851 - 26806925
Alignment:
Q  336 taaaacttttgattagactgttatcccattatttaatatttaagatttaagtgtcattctcaatctaagaagaat 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26806851 taaaacttttgattagactgttatcccattatttaatatttaagatttaagtgtcattctcaatctaagaagaat 26806925  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 416 - 444
Target Start/End: Original strand, 264245 - 264273
Alignment:
Q  416 ggaatcacgctctgtaggatttgaaccta 444  Q
    |||||||||||||||||||||||||||||    
T  264245 ggaatcacgctctgtaggatttgaaccta 264273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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