View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_25 (Length: 454)
Name: NF11856_low_25
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 410
Target Start/End: Original strand, 41920926 - 41921324
Alignment:
| Q |
19 |
aaaccgaaaccaagatttcacaaaaatacgatttataatttacatgtgttaaaatgt-agttttgaataaattaggttgacgtttgtttagcatatttgg |
117 |
Q |
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| T |
41920926 |
aaaccgaaaccaagatttcacaaaaatacgatttataatttacatgtgttaaaatgttagttttgaataaattaggttgacgtttgtttagcatatttgg |
41921025 |
T |
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| Q |
118 |
aaatttcaaacataaagttatcacgtcacgacatccatgaactcacagctacgcaccaaaccaacaagtagtggtccatgacataaatttatc------- |
210 |
Q |
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| T |
41921026 |
aaatttcaaacataaagttatcacgtcacgacatccatgaactcacagctacgcaccaaaccaacaagtagtggtccatgacataaatttatcaaatatg |
41921125 |
T |
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| Q |
211 |
aaatatcaattgatttttgtgggcttttactctctttagttctatatttaaaagacagtttaagtcaataaatattgatacatttaaattaaattttaga |
310 |
Q |
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| T |
41921126 |
aaatatcaattgatttttgtgggcttttactgtctttagttctatatataaaagaaag-ttaagtcaataaaaattgatacatttaaattaaattttaga |
41921224 |
T |
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| Q |
311 |
ttaaattcatcaattcttgttgatttaaacttttcttaaatacaagatcagaagtattagtgcttaccagaagaaacaataatcctacggatgattaaat |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41921225 |
ctaaattcatcaattcttgttgatttaaacttttcttaaatataagatcggaagtattagtgcttaccagaagaaacaataatcctaaggatgattaaat |
41921324 |
T |
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