View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11856_low_27 (Length: 420)
Name: NF11856_low_27
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 3166834 - 3166942
Alignment:
| Q |
304 |
ttgtagatcattaaatatttaagcatcccacttttcttatagttcaaataatacttgaccaatgacttggaaataccaggatcagagtcatctggtttgc |
403 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3166834 |
ttgtagaagattaaatatttgagcatcctacttttctcatagttcaaataataattgaccaatgacttggaaataccaggatcagagtcatctggtttgc |
3166933 |
T |
|
| Q |
404 |
gttcatctc |
412 |
Q |
| |
|
|| |||||| |
|
|
| T |
3166934 |
gtacatctc |
3166942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 3128798 - 3128901
Alignment:
| Q |
140 |
accttcaaacaccaaaggggatttgaagctaacaacaaattctggatagatatgtgtgttcatatttatgttccaaaccacatagcactttggaaattga |
239 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||| ||||| |||||||| |||||||||||||| || ||||| ||||||||||||||||| ||||| |
|
|
| T |
3128798 |
accttcaaaacctaaaggggacttgaagctaacaacgaattccggatagatgtgtgtgttcatattcatattccacaccacatagcactttgggcattga |
3128897 |
T |
|
| Q |
240 |
atgt |
243 |
Q |
| |
|
|||| |
|
|
| T |
3128898 |
atgt |
3128901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 3291523 - 3291453
Alignment:
| Q |
162 |
ttgaagctaacaacaaattctggatagatatgtgtgttcatatttatgttccaaaccacatagcactttgg |
232 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |
|
|
| T |
3291523 |
ttgaagctaacaacgaattctggatagatatgtgtgttcatattcatgatccacaccacatagcactttgg |
3291453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 403
Target Start/End: Original strand, 3129966 - 3130099
Alignment:
| Q |
270 |
aacatcctctggatagttcaaccattcaccgttcttgtagatcattaaatatttaagcatcccacttttcttatagttcaaataatacttgaccaatgac |
369 |
Q |
| |
|
||||||||||||||| | | ||||| ||| ||||| |||| ||| ||| ||| | || |||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
3129966 |
aacatcctctggataatcaacccatttaccattcttatagaacatcaaacgttttggtatgccacttttcttatagttcaaataataactaaccaatgac |
3130065 |
T |
|
| Q |
370 |
ttggaaataccaggatcagagtcatctggtttgc |
403 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |
|
|
| T |
3130066 |
ttggaaatatcaggacaagagtcatctggtttgc |
3130099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 120 - 244
Target Start/End: Original strand, 12415532 - 12415656
Alignment:
| Q |
120 |
ttctaaaggaacattacatcaccttcaaacaccaaaggggatttgaagctaacaacaaattctggatagatatgtgtgttcatatttatgttccaaacca |
219 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| ||||||||| |||||||| ||||||||||||||||| ||||| |||||||| |||||||| | |
|
|
| T |
12415532 |
ttctaaaggaacgttacatcaccttcagcttccaaagaggatttgaacctaacaacgaattctggatagatatgcgtgtttatatttatattccaaacaa |
12415631 |
T |
|
| Q |
220 |
catagcactttggaaattgaatgtt |
244 |
Q |
| |
|
||||| |||||||| |||||||||| |
|
|
| T |
12415632 |
catagtactttggacattgaatgtt |
12415656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 38209463 - 38209504
Alignment:
| Q |
183 |
ggatagatatgtgtgttcatatttatgttccaaaccacatag |
224 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
38209463 |
ggatatatatgtgtgtttatattcatgttccaaaccacatag |
38209504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 50851944 - 50851996
Alignment:
| Q |
162 |
ttgaagctaacaacaaattctggatagatatgtgtgttcatatttatgttcca |
214 |
Q |
| |
|
||||| ||||| ||||||||||||||||| || ||||||||||| || ||||| |
|
|
| T |
50851944 |
ttgaaactaacgacaaattctggatagatgtgggtgttcatattcatattcca |
50851996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University