View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_29 (Length: 409)
Name: NF11856_low_29
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_29 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 193 - 409
Target Start/End: Original strand, 14012515 - 14012724
Alignment:
| Q |
193 |
aaaagctttaacacgaaagaatggaagctccaaagtaaaatagttaaaaagctaaaaatccaccaaagagtacttttcaagtgaattgatcaagaacaaa |
292 |
Q |
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| T |
14012515 |
aaaagctttaacaccaaagagtggaagctccaaagtaaaatagtaaaaaagctaaaactccaccaaagagcacttttcaagtgaattgatcaagaacaaa |
14012614 |
T |
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| Q |
293 |
tgaccgaggatcggaaagaaggaggtaccttaagatcctacttcaagctgctaatgagctatcgaataccgaaggactgtagacaatgcacagaacatca |
392 |
Q |
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| T |
14012615 |
tgactgaggatcggaaagaaagaggtaccttaagatctcgcttcaagccgctaatgagc-------taccgaaggaccgtagacaatgcagagaacatca |
14012707 |
T |
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| Q |
393 |
actactactcaggagcc |
409 |
Q |
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| T |
14012708 |
actactactctggagcc |
14012724 |
T |
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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 25812754 - 25812581
Alignment:
| Q |
3 |
ttagactaaacataaaacatcccaaag------atatgctataaaaatgtcaaaatataggagaagataaaagattacaaaggacaaaaccctcttagcg |
96 |
Q |
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| T |
25812754 |
ttagattaaacataaaacatcccaaagcacaagatatgctataaaaatgtcaaaatagagggcaagatcaaagattgcataggacaaaacccccttagca |
25812655 |
T |
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| Q |
97 |
ccaaaaacaacaaccacgatgctaaataactccgaaagggataaataaatttgagcactaagataacaactaaa |
170 |
Q |
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| T |
25812654 |
caaaatacaacaacaaggatgccaaataacttcagaagggataaataaacttgagcaccaagataacaactaaa |
25812581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 329
Target Start/End: Complemental strand, 25812567 - 25812457
Alignment:
| Q |
219 |
gctccaaagtaaaatagttaaaaagctaaaaatccaccaaagagtacttttcaagtgaattgatcaagaacaaatgaccgaggatcggaaagaaggaggt |
318 |
Q |
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| T |
25812567 |
gctccaaagtaaaaaagtaaaaaagctaaaactccaccaaagcgcacttttcgagcgtactgatcaagaacaagtgaccgaatatcagaaagaaagagac |
25812468 |
T |
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| Q |
319 |
accttaagatc |
329 |
Q |
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| T |
25812467 |
accttaggatc |
25812457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 60 - 232
Target Start/End: Original strand, 16961 - 17133
Alignment:
| Q |
60 |
aagataaaagattacaaaggacaaaaccctcttagcgccaaaaacaacaaccacgatgctaaataactccgaaagggataaataaatttgagcactaaga |
159 |
Q |
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| T |
16961 |
aagatcaaagattgcagaggacgaaaccccccgagcaccaaaaacaacaaccaggatgccaaataactcgacaagggataaaaaaaattgagcagcaaga |
17060 |
T |
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| Q |
160 |
taacaact-aaagccacctagactaaaccaggacaaaagctttaacacgaaagaatggaagctccaaagtaaaa |
232 |
Q |
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| T |
17061 |
taacaactaaaagtcacctagac-aaaccaagacaaaagctttaacgccaaagagtggaagctccaaagtaaaa |
17133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 329
Target Start/End: Original strand, 6984469 - 6984770
Alignment:
| Q |
27 |
aagatatgctataaaaatgtcaaaatataggagaagataaaagattacaaaggacaaaaccctcttagcgccaaaaacaacaaccacgatgctaaataac |
126 |
Q |
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| T |
6984469 |
aagatatgctatgataatgtcaaaatacagggcaagatcaaagattgcagaagacaaaaccc-ctgagtaccaaaaacaacaacaagaatgtcaaataac |
6984567 |
T |
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| Q |
127 |
tccgaaagggataaataaatttgagcactaagataacaactaaagccacctagactaaaccaggacaaaagctttaacacgaaagaatggaagctccaaa |
226 |
Q |
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| T |
6984568 |
tccaaaaggaataaaaa---tcgagcaccaagataacaactaaagcaacctagataaaaccaaggtaaaaactttagcaccaaagggtgggagctccaaa |
6984664 |
T |
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| Q |
227 |
g--taaaatagttaaaaagctaaaaatccaccaaagagtacttttcaagtgaattgatcaag-aacaaatgaccgaggatcggaaagaaggaggtacctt |
323 |
Q |
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| T |
6984665 |
gaaaaaaaaattaaaaaagccaaaactccaccaaagtgcattattcgagcaaattgatcaagaaataaaaggccgaagatcggaaagatagaggaacctt |
6984764 |
T |
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| Q |
324 |
aagatc |
329 |
Q |
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| T |
6984765 |
aggatc |
6984770 |
T |
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