View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11856_low_3 (Length: 836)
Name: NF11856_low_3
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 320 - 818
Target Start/End: Complemental strand, 49023439 - 49022940
Alignment:
| Q |
320 |
ccattgaaggaatgagccttcattgtggattcttgcaacaaaaaactcacttcaacagcaccattttagactctatgaacccaattttcttcacttttgt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49023439 |
ccattgaaggaatgagccttcattgtggattcttgcaacaaaaaactcacttcaacagcaccattttagactctatgaacccaattttcttcacttttgt |
49023340 |
T |
|
| Q |
420 |
gctttattttgaggttacttacacatatacctgtatgatctaagaaagtgaagaacggaaatttagagattaatgtgaacatgtagaaattataaaagtc |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49023339 |
gctttattttgaggttacttacacatatacctatatgatctaagaaagtgaagaacggaaatttagagattaatgtgaacatgtagaaattataaaagtc |
49023240 |
T |
|
| Q |
520 |
acatgggtgtggggtggtagtaatgtgtgtagtgataaagatctaatcaa-ctacaaagaacaaaactaaaaacgcgggtgtcattttaattaagcgcaa |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49023239 |
acatgggtgtggggtggtagtaatgtgtgtagtgataaagatctaatcaaactacaaagaacaaaactaaaaacgcgggtgtcattttaattaagcgcaa |
49023140 |
T |
|
| Q |
619 |
attacgtgttattcactttaattttggtccaataataatgctttggattatgtgtgtgtgcttcttttgttgactaattttgtgttctattgcaatgcaa |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49023139 |
attacgtgttattcactttaattttggtccaataataatgctttggattatgtgtgtgtgcttcttttgttgactaattttgtgttctattgcaatgcaa |
49023040 |
T |
|
| Q |
719 |
aatgttatttttatgaacaataaatttgttattgtaaagtatccaatttaggtactttaccgacaatcacattcacatacacttgtgttgtgttaggtta |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49023039 |
aatgttatttttatgaacaataaatttgttattgtaaagtatccaatttaggtactttaccgacaatcacattcacatacacttgtgttgtgttaggtta |
49022940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 49023741 - 49023482
Alignment:
| Q |
18 |
atcaaaaagatcaaccaaaacccgaataataatccaacaatatcatagaaatgaaaggcatcaaaaatttcattagtgcaattaacaataaaaaatgaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49023741 |
atcaaaaagatcaaccaaaacccgaataataatccaacaatatcatagaaatgaaaggcatcaaaaatttcattagtgcaattaacaataaaaaatgaaa |
49023642 |
T |
|
| Q |
118 |
atttctagaaacccaacaacaaaagccctaagatttaaaagatctaaaccaaacccatcacagaaaatcagaaataataatgaatgagaaacacaaacct |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49023641 |
atttttagaaacccaacaacaaaagccctaagatttaaaagatctaaaccaaacccatcacagaaaatcagaaataataatgaatgagaaacacaaacct |
49023542 |
T |
|
| Q |
218 |
atgataaacttgatgtggtgatcaatcgacccagttgaagataaagctgaaatcgagctc |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49023541 |
atgataaacttgatgtggtgatcaatcgacccagttgaagataaagctgaaatcgagctc |
49023482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University