View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11856_low_34 (Length: 381)

Name: NF11856_low_34
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11856_low_34
NF11856_low_34
[»] chr2 (2 HSPs)
chr2 (125-204)||(20220174-20220254)
chr2 (66-113)||(20220139-20220186)
[»] chr1 (2 HSPs)
chr1 (210-271)||(37621598-37621659)
chr1 (210-257)||(39988020-39988067)


Alignment Details
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 20220174 - 20220254
Alignment:
Q  125 acatctattttgagaacacattattaagaaacttaattgattttagg-ttgtatatttgtaacgtgttgtttctcaaatat 204  Q
    ||||||||||||||| ||| ||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20220174 acatctattttgagaccacctttctaagaaacttaattgattttaggtttgtatatttgtaacgtgttgtttctcaaatat 20220254  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 20220139 - 20220186
Alignment:
Q  66 ttctaagcaacagtttttgatataaatgctatgacacatctattttga 113  Q
    |||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  20220139 ttctaagcaacattttttgagataaacgctatgacacatctattttga 20220186  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 37621659 - 37621598
Alignment:
Q  210 aaggaatatctattctaagaaattagaggaagactagaatttcatttcagaattatttctta 271  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||    
T  37621659 aaggaatatctctcctaagaaattagaggaagactagaatttcatttctgaattatttctta 37621598  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 39988020 - 39988067
Alignment:
Q  210 aaggaatatctattctaagaaattagaggaagactagaatttcatttc 257  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||    
T  39988020 aaggaatatctctcctaagaaattagaggaagactagaatttcatttc 39988067  T

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